prot_Ecto-sp13_S_contig1081.729.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1081.729.1
Unique Nameprot_Ecto-sp13_S_contig1081.729.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length141
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1081.729.1 vs. uniprot
Match: A0A6H5KHR3_9PHAE (Biogenesis of lysosome-related organelles complex 1 subunit 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHR3_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 2.950e-85
Identity = 133/140 (95.00%), Postives = 136/140 (97.14%), Query Frame = 0 
Query:    1 MELEPTGVVGQVVHGYEQKRPKSLEQLATARKAATKAVEKASFLLQPKAAVRAENVARGQTQVDRAARWLKEDTRDLEHLSQGWANAYADLSKELVLMGDMKAWTETLELKLRSVKAELEHSKGCMVAWQRLNDEDAEGR 140
            MELEPTGVVGQVVH +EQ+RPKSLEQLATARKAATK VEKASFLLQPKAAVRAENVARGQTQVDRAAR LKEDTRDLEHLSQGWANAYADLSKELVLMGDM+AWTETLELKLRSVKAELEHSKGCMVAWQRLNDEDAE R
Sbjct:    1 MELEPTGVVGQVVHDFEQQRPKSLEQLATARKAATKTVEKASFLLQPKAAVRAENVARGQTQVDRAARRLKEDTRDLEHLSQGWANAYADLSKELVLMGDMRAWTETLELKLRSVKAELEHSKGCMVAWQRLNDEDAEDR 140
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1081.729.1 vs. uniprot
Match: D8LIZ2_ECTSI (Oligopeptidase A (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIZ2_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 6.310e-6
Identity = 28/41 (68.29%), Postives = 31/41 (75.61%), Query Frame = 0 
Query:   85 ANAYADLSKELVLMGDMKAWTETLELKLRSVKAELEHSKGC 125
            A+A    ++   LMGDMKAWTETLELKL SVKAELEHSK  
Sbjct:  205 ASALGLAAQSAKLMGDMKAWTETLELKLLSVKAELEHSKAA 245
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1081.729.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KHR3_9PHAE2.950e-8595.00Biogenesis of lysosome-related organelles complex ... [more]
D8LIZ2_ECTSI6.310e-668.29Oligopeptidase A (Fragment) n=1 Tax=Ectocarpus sil... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009395Biogenesis of lysosome-related organelles complex 1 subunit 1PFAMPF06320GCN5L1coord: 15..121
e-value: 5.8E-11
score: 42.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1081contigEcto-sp13_S_contig1081:7711..12107 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1081.729.1mRNA_Ecto-sp13_S_contig1081.729.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1081 7660..12262 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1081.729.1 ID=prot_Ecto-sp13_S_contig1081.729.1|Name=mRNA_Ecto-sp13_S_contig1081.729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
MELEPTGVVGQVVHGYEQKRPKSLEQLATARKAATKAVEKASFLLQPKAA
VRAENVARGQTQVDRAARWLKEDTRDLEHLSQGWANAYADLSKELVLMGD
MKAWTETLELKLRSVKAELEHSKGCMVAWQRLNDEDAEGR*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009395BLOC1S1