mRNA_Ecto-sp13_S_contig1081.729.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1081.729.1
Unique NamemRNA_Ecto-sp13_S_contig1081.729.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1081.729.1 vs. uniprot
Match: A0A6H5KHR3_9PHAE (Biogenesis of lysosome-related organelles complex 1 subunit 1 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHR3_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 5.290e-85
Identity = 133/140 (95.00%), Postives = 136/140 (97.14%), Query Frame = 1 
Query:   52 MELEPTGVVGQVVHGYEQKRPKSLEQLATARKAATKAVEKASFLLQPKAAVRAENVARGQTQVDRAARWLKEDTRDLEHLSQGWANAYADLSKELVLMGDMKAWTETLELKLRSVKAELEHSKGCMVAWQRLNDEDAEGR 471
            MELEPTGVVGQVVH +EQ+RPKSLEQLATARKAATK VEKASFLLQPKAAVRAENVARGQTQVDRAAR LKEDTRDLEHLSQGWANAYADLSKELVLMGDM+AWTETLELKLRSVKAELEHSKGCMVAWQRLNDEDAE R
Sbjct:    1 MELEPTGVVGQVVHDFEQQRPKSLEQLATARKAATKTVEKASFLLQPKAAVRAENVARGQTQVDRAARRLKEDTRDLEHLSQGWANAYADLSKELVLMGDMRAWTETLELKLRSVKAELEHSKGCMVAWQRLNDEDAEDR 140
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BLAST of mRNA_Ecto-sp13_S_contig1081.729.1 vs. uniprot
Match: D8LIZ2_ECTSI (Oligopeptidase A (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIZ2_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 3.070e-5
Identity = 28/41 (68.29%), Postives = 31/41 (75.61%), Query Frame = 1 
Query:  304 ANAYADLSKELVLMGDMKAWTETLELKLRSVKAELEHSKGC 426
            A+A    ++   LMGDMKAWTETLELKL SVKAELEHSK  
Sbjct:  205 ASALGLAAQSAKLMGDMKAWTETLELKLLSVKAELEHSKAA 245
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1081.729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KHR3_9PHAE5.290e-8595.00Biogenesis of lysosome-related organelles complex ... [more]
D8LIZ2_ECTSI3.070e-568.29Oligopeptidase A (Fragment) n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1081contigEcto-sp13_S_contig1081:7660..12262 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size629
Hectar predicted targeting categoryother localisation
Exons5
Cds size423
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1081.729.1prot_Ecto-sp13_S_contig1081.729.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1081 7711..12107 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462556.3119917-UTR-Ecto-sp13_S_contig1081:7659..77101681462556.3119917-UTR-Ecto-sp13_S_contig1081:7659..7710Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1081 7660..7710 +
1681462556.3714828-UTR-Ecto-sp13_S_contig1081:12107..122621681462556.3714828-UTR-Ecto-sp13_S_contig1081:12107..12262Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1081 12108..12262 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462556.322617-CDS-Ecto-sp13_S_contig1081:7710..77921681462556.322617-CDS-Ecto-sp13_S_contig1081:7710..7792Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1081 7711..7792 +
1681462556.3317118-CDS-Ecto-sp13_S_contig1081:10415..105191681462556.3317118-CDS-Ecto-sp13_S_contig1081:10415..10519Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1081 10416..10519 +
1681462556.344001-CDS-Ecto-sp13_S_contig1081:10864..109661681462556.344001-CDS-Ecto-sp13_S_contig1081:10864..10966Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1081 10865..10966 +
1681462556.3521175-CDS-Ecto-sp13_S_contig1081:11423..115041681462556.3521175-CDS-Ecto-sp13_S_contig1081:11423..11504Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1081 11424..11504 +
1681462556.361484-CDS-Ecto-sp13_S_contig1081:12053..121071681462556.361484-CDS-Ecto-sp13_S_contig1081:12053..12107Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1081 12054..12107 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1081.729.1

>prot_Ecto-sp13_S_contig1081.729.1 ID=prot_Ecto-sp13_S_contig1081.729.1|Name=mRNA_Ecto-sp13_S_contig1081.729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
MELEPTGVVGQVVHGYEQKRPKSLEQLATARKAATKAVEKASFLLQPKAA
VRAENVARGQTQVDRAARWLKEDTRDLEHLSQGWANAYADLSKELVLMGD
MKAWTETLELKLRSVKAELEHSKGCMVAWQRLNDEDAEGR*
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mRNA from alignment at Ecto-sp13_S_contig1081:7660..12262+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1081.729.1 ID=mRNA_Ecto-sp13_S_contig1081.729.1|Name=mRNA_Ecto-sp13_S_contig1081.729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4603bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1081:7660..12262+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCAATTCAGCTCCTCTCGCTTGCTTGGGCCAGTGGGCAACGCTGTCAG
CATGGAACTCGAGCCGACGGGTGTGGTGGGGCAGGTAGTTCATGGCTACG
AACAGAAGAGGCCGAAGAGCCTTGAACAGCTTGGTGAGCCTACGGCATAA
AACGTGACATGCACTCTGTGGACGCCTGCTAGAATAGATCCAGCGCCCAG
CACAGGCATTTGTGTAGAGAAGAGATTGAGCATGCAATAAAGCATGCGAG
CGTGTGGAGGTGGGAACCGGGACAACTGGAGCGGTCCACACGTAAACAAT
GTGGACAGCGGCTCCGCCCGCTGGCGACGACTGTTTCACTCATCCGTGAC
TGACCCACCCCCCTTTGCGCACGATTTCGAAAAAGGTCACAAGCAGCATG
TAGCTCGCGGAGAATCCCCTACTCAGGAATCAGCACGATTGCTGTTGCTG
TTGTACACACCCTACGGTACGATACCCCTGAGTGCACCGCGTATCATGGG
TGTCCATGTGGCCAACACTCTGTAACTGCTCTTGCTGTGTTGTACGTTGT
ACCGACTTTCCCGGGGCAGCAAGCAACTTTAGTGCGGACCACGAATAGCC
CGCTGCTGTTGTTTGGCGACAGGTCCTTTGTTCTCAGTGCATCATATTAC
CAACTACGATTGAAACCATAATGTTGTACCTGGCAATGGATGAAACGGGC
TCACGTCCACGTCTTGAGACGCCACACTAAACCTTGTGTACATCTTACGA
CGTTGTTTCCGTGTAGGGAGAGCGTCACGCACAGCAAGCAGTCAGTGCAG
CTGACTCTCGCCGCGAACCTCTAGAGTTTTCTACCGTAAACGGCGGGGAG
ATCGTACCCGCACTTGACTGATATTCAGAGATTGATTGCTCCATCACCAA
GTGTGTAGACCAAAAAAAATGTGGTTTTGGAAACATGTCGTTCAAGTCTT
TTTCCGTCGACGTCTCGGGCTCTTTCCGCGCCTCCTTTGTTGTAGAGCAA
TCGTGCTTTGGAAGTCGGGCTAGGGGGTGTGCCATCTCTCCGCGTCTTAC
GGAATACCACGGTACCATGGTACGGTATACGGTACGGTACAGACAGTCTT
GGTTGTGGAGTAATCGTGCTTTGGAAGTTGGGCTAGGGAGTGTGCCATCT
CTCCGCCTCTTACGGTATCCGCCACAAAGGGAGAACTCGGTCAACATGCC
GCCGTAGGTTGCACAAGATACCACACCCTCTGGACCGAATTCAAAACCTC
TTAATATTCCACGACGAAGCGGATGCCGAAATCAAGTGATACATTTTCGG
AAAAATCTCGACAAGGCAGCAATTCCACGCCGCCATCTCCGCCACCATCA
TTGTTGCTTGTCCTGCGGAGTGTTCGGGCTTTAAAAATCGGTGTCAAGGG
GGTGTGATATCTTACGCGACCCACGACATGTACTACCGTGCGTGACGTAA
GATATCATACTCCCTTGACCGGCTTGCAAGCCCCGATACTCTCCGGCAGA
AAAGAGAGGCGGTGCCGAAAATGGAGGCGTTGGAAACTATTCCTTAGGGC
GATTCCCGCAAAAGTATCGCTTGACTTACCCTGAGTATTCGAGCTTTGAA
ACTACGTCCAGTCGGTGGAATATCTGATGTCGCCGAGGTTGTGTCGACGT
AATGTACTTAAGAACTTGGCAACAAAAACAGCAGTAGGAGGGGTGATTGA
GGCGGCGAAACGACCGCTTTACCGCTTTACATGCATGCCGCTCAGTAGGG
AGCGTTAGAAAACACATACCCTTCGAACCCAGTTTTCTCTCGAACGGTCA
ATCTTTGTGCTATGTAAGAGTACTACGTAAAAAACTTGGCTTTGGCCAGT
ATTTGACGCTTTGACCGGACTGTCGGTTTCACCTCTATTGTTTGGATCGT
CGAGATGCCATCGCCGAAAGCCATGTTTCTGAAAAAAGATCGTTCACTTC
CCGAGAAAACTAAGCCAAAGAGTATCGTTCAAATGGCACGAAGACACATA
CGTATGCAATATTGAGCACGTGACGGACGGCGCGCAAATTTGTGGAACAA
TGTCAGGTCAGCGGGAAAAATTAGCAAGATCCAGAAGCTTCGCAACAGTA
AACTATACCTCTTCTCACGCACTATGTCGACGACGGGCACGGAAGCATCT
CACGATGTGTTTTCGCTGCCGCGCCACAAGTAGACCACCTTTTCTCTCTC
TTCTCGTTCTTTGAACTATCTCGAAAAGGGGCGGCACAGGGGTTCAGCAA
GAAATTAACTTTACCAATTAAATAGAGGGGCAGGGGTTACGTAGAACCCT
GATCCTAACCCCCGAAATCCCATCGTGTCCAACATGTTTGCTTAGTATAA
ACCTGCGAAGGCTACTATGTATCTCGTGGCCACCGCCTTGTAAGCGGTTT
TAGGTTGCGTAAATCCAGCATCATCTTCCAGTCCTTACAAAACACAGTTG
GCCGTCGTGGTAGACTCGCGCCACCAGCTACGCTAGTACTTCTATTGATG
ACCTGCGTCACCCTATCATCTCTCTCTATACATACTGACACCCTTGGTTG
CTTTTTTCTCTCAAGTATAAATTCAAACTTTCTCTTGTCTCCCCCCCCCG
CCCTCCACCTGCCTGGCCGGATGTACCCCGCGGGGAACCCGGCGAACCAC
CTACCCTGCGCCTTCCCGACCGGGTATACTCTGCGGGACCCCTGGCGCAC
CACCTGCCCGGTGGGGCCGTATCTACTCTTCGGCGGCCCCCTACTCTCGC
GAGTAGCAACAGCCCGCAAGGCGGCGACGAAGGCTGTGGAGAAAGCCTCC
TTCCTGCTGCAGCCCAAGGCCGCCGTGAGGGCGGAGAACGTGGCGAGAGG
TCAGACGCAGGTGGGTGGATGTTGTATCAGGTTTGGCCTTGAACCGAAGA
ACTACGTCTTGATTTGGGACTGTATACAGGTTTGTTCTATTTTCTTGTTT
GGATCATTGTGGTTCGCCTGGCTGTTCGAGTCAAAAACACGTCAGCTGTT
TTGTGAGCTATTGAGCTGGACTGTTCGGTTCAAAAAACACGTCGGCTGTT
GAGCTTGGGAAACGTCACACGGTGGCTGGCTGTGAGTTGGTCCTGCTGCT
TGCTTTTATTTTAATCTTGCGTCACTCCCGTGTGGCATCTTATGCAACCT
ACCGTGTCCTTGCGCGTAACTCTAACGCTGCCGCCGCTCGACCCGCCTAG
CGTAGGTAGACCGCGCAGCTCGCTGGCTGAAGGAAGACACGAGGGATCTT
GAGCACTTGAGCCAGGGCTGGGCCAACGCTTACGCCGACCTCTCGAAGGA
GCTGGTGGTGAGTTGCTAGCTGCTGGTAGCCGGATGCTACTGCTGCAATC
ACCTTTCTTCTGATGACGAGTTTGGGTTGGCTGGGGCTACAGAGGGGGAC
AATGCGTGCTCCCCCCACCTGATGACCGGATAAAAAGGGTAGGGAAAACA
GTGTTGTGCCACCTTCAGCGAAGTAGGAAGGAAAGGTTGGCCATCGGTGA
TCGGTCCCGTGGGAACAATGCTCGGTCCTCTCGAGGACGCGTGGCCAAAG
CTCTGACCCCTAAGGCATAAAACTATAAAAGTATGCCACGATCCCAGCTC
TCCTACCTGAAACTAAAAATGAATAATGTCCCCTACATCAAAAGGGCTGT
TGAACTTGGAACAGGGAGCTAACCAACTCCCCCCCCCCCCGGTGTGTTGC
GTCCTTGCCTCGAATGCCTCATCCCTGCCCTTCCCCCTCCGGCGGGTGGC
GGGTGGCACGACAGCTGATGGGTGACATGAAGGCCTGGACGGAAACGCTG
GAGCTTAAGCTACGCTCAGTGAAGGCGGAGCTTGAGCACTCGAAGGTACG
AGGACTCTGGGAATCATAAGTGCATGTGCAGGATGCCCGAATGTATCCAT
GGGTGATACGGTACCGCTCTCTCTTTTCACCTTTTTTTCTTGTGTGTGTG
TTCACTCCAAATCAGTGCTCACAGCATTTGTGCCATTTTCGCCCCAACTC
TTGATTGGTGATACCAATAGTTGAACGTGCGGGCATATGGGTGAGGATAT
CACTTCATTTTTTTTCTGATGACCGCACAGTTTGCCCGGTGGAGTTCCGA
AACAGGGTTGACTTTGGCGACCGTGCAAAGATAGAGAAGGCCCTCATTTT
TTCCATAACTCAGTTTGGGTTATGCTGTGAGAATGGTAAGTTCTTTCGTT
TAGGAGTGTACCGAACAGGAGGCACCGGTTTGTAGTCAAGAGCACGCACG
AAAGCAATACCAAAAGCTGTATTCTTCCACTCTTCGAGAAGTGCATATTA
AGATTTCAACCATGTCCCCGTCAGTTTCACGGGAGCATGCTCTGCTCTGC
TTTTCCCCTTCCGTCGTTTTGGCGTGGTGTGCTCGTGTTGACAGGGGTGC
ATGGTAGCGTGGCAACGGTTGAACGACGAAGATGCAGAAGGCCGATGAGG
AAAAGCGGACGATAAGGCCGCAAAGCTTACAGCTATAGTGGTCTCTCATG
TCGAAGTCGTTTGTTTTTTTTTCTTTTGTTTGGCATCGACAACGCTGATC
AATGAGGAGACGCCAATCTTGCGAATGGCGGCATGTAAAACGCGGAAATA
CGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1081:7660..12262+

>mRNA_Ecto-sp13_S_contig1081.729.1 ID=mRNA_Ecto-sp13_S_contig1081.729.1|Name=mRNA_Ecto-sp13_S_contig1081.729.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1081:7660..12262+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAACTCGAGCCGACGGGTGTGGTGGGGCAGGTAGTTCATGGCTACGA
ACAGAAGAGGCCGAAGAGCCTTGAACAGCTTGCAACAGCCCGCAAGGCGG
CGACGAAGGCTGTGGAGAAAGCCTCCTTCCTGCTGCAGCCCAAGGCCGCC
GTGAGGGCGGAGAACGTGGCGAGAGGTCAGACGCAGGTAGACCGCGCAGC
TCGCTGGCTGAAGGAAGACACGAGGGATCTTGAGCACTTGAGCCAGGGCT
GGGCCAACGCTTACGCCGACCTCTCGAAGGAGCTGGTGCTGATGGGTGAC
ATGAAGGCCTGGACGGAAACGCTGGAGCTTAAGCTACGCTCAGTGAAGGC
GGAGCTTGAGCACTCGAAGGGGTGCATGGTAGCGTGGCAACGGTTGAACG
ACGAAGATGCAGAAGGCCGATGA
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