prot_Ecto-sp13_S_contig10801.724.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig10801.724.1
Unique Name	prot_Ecto-sp13_S_contig10801.724.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	474

Homology

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BLAST of mRNA_Ecto-sp13_S_contig10801.724.1 vs. uniprot
Match: A0A6H5KI11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI11_9PHAE)

HSP 1 Score: 353 bits (907), Expect = 2.260e-115
Identity = 235/242 (97.11%), Postives = 236/242 (97.52%), Query Frame = 0

Query:    1 QANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEGSAPAAGGNGGMXXXXXXXXXXXXPGSMXXXXXXXXGMXXXXXXSXGMXXXXXXXXXXXXXXXXXXXXXXRGGGGMPRGMPXXXXXXYGRGYPHHMAPQHMMPHGRMGPNMGMPMGMQ 242
            +ANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEGSAPAAGGNGGMXXXXXXXXXXXXPGSMXXXXXXXXGMXXXXXXSXGMXXXXXXXXXXXXXXXXXXXXXXRGGGGMPR   XXXXX YGRGYP HMAPQHMMPHG MGPNMGMPMGMQ
Sbjct:   93 KANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEGSAPAAGGNGGMXXXXXXXXXXXXPGSMXXXXXXXXGMXXXXXXSXGMXXXXXXXXXXXXXXXXXXXXXXRGGGGMPRXXXXXXXXGYGRGYPQHMAPQHMMPHGGMGPNMGMPMGMQ 334

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BLAST of mRNA_Ecto-sp13_S_contig10801.724.1 vs. uniprot
Match: D8LT41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT41_ECTSI)

HSP 1 Score: 322 bits (824), Expect = 4.060e-101
Identity = 192/250 (76.80%), Postives = 193/250 (77.20%), Query Frame = 0

Query:    1 QANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEGSAPAAGGNGGMXXXXXXXXXXXXPGSMXXXXXXXXGMXXXXXXSXGMXXXXXXXXXXXXXXXXXXXXXXRGGGGMPRGMPXXXXXXYGRGYPHHMAPQHMMPHGRMGPNMGMPMGMQRGGGGYNM 250
            +ANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEGSAPAAGGNGGM                                  GM XXXXXXXXXXXX         RGG  MPRGM XXXXXX       HMAPQHMMPH  M PNMGMPMGMQRGGGGYNM
Sbjct:   93 KANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEGSAPAAGGNGGM----------------------------------GMGXXXXXXXXXXXX---------RGGXXMPRGMXXXXXXXXXXXXXQHMAPQHMMPHVGMRPNMGMPMGMQRGGGGYNM 299

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BLAST of mRNA_Ecto-sp13_S_contig10801.724.1 vs. uniprot
Match: A0A835YPU5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU5_9STRA)

HSP 1 Score: 206 bits (523), Expect = 1.690e-57
Identity = 94/125 (75.20%), Postives = 110/125 (88.00%), Query Frame = 0

Query:    1 QANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEG 125
            +A DVGANLFIGQLDP+VDEK+LYDTFSAFGFIT TPKVMRDP+TG SKGYGFVSYDGFEASD AIECM+ Q+LCNRQI VQYA+K+D+ GERHG  AERLLA+NNP + K HT+F+   G+++G
Sbjct:   93 KAQDVGANLFIGQLDPEVDEKLLYDTFSAFGFITNTPKVMRDPETGASKGYGFVSYDGFEASDLAIECMNGQFLCNRQIVVQYAFKRDSHGERHGSLAERLLAANNPLRLKPHTMFASQEGEVQG 217

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BLAST of mRNA_Ecto-sp13_S_contig10801.724.1 vs. uniprot
Match: F0YAQ8_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YAQ8_AURAN)

HSP 1 Score: 192 bits (489), Expect = 1.410e-53
Identity = 88/127 (69.29%), Postives = 103/127 (81.10%), Query Frame = 0

Query:    4 DVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEGSAPAA 130
            +VGANLF+G LD DVDEK+LYDTFSAFG IT+TPK+MRDPDTG SKG+GFVSYD FEASD AIECMHNQ+LCN+Q+ V YA+K+D++ ERHG QAERLLA+NNP   K H +F   PG   G   AA
Sbjct:   97 EVGANLFVGGLDVDVDEKLLYDTFSAFGTITETPKIMRDPDTGNSKGFGFVSYDSFEASDLAIECMHNQFLCNKQVQVGYAFKRDSKTERHGSQAERLLAANNPMSAKPHAMFGTGPGDAMGGGYAA 223

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BLAST of mRNA_Ecto-sp13_S_contig10801.724.1 vs. uniprot
Match: A0A0W8D7L6_PHYNI (Splicing factor 3B subunit 4 n=11 Tax=Peronosporaceae TaxID=4777 RepID=A0A0W8D7L6_PHYNI)

HSP 1 Score: 190 bits (482), Expect = 1.600e-53
Identity = 86/122 (70.49%), Postives = 100/122 (81.97%), Query Frame = 0

Query:    4 DVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEG 125
            DVGANLFIG LDP+VDEK+LYDTFSAFG I +TPK+MRDPDT  SKG+GFVS+D FEA+D AIECMH QYLCNRQ+ VQYA+KKD+  ERHG +AERLLA  NP+K K HT+F+   G   G
Sbjct:   96 DVGANLFIGNLDPEVDEKLLYDTFSAFGGIVETPKIMRDPDTKASKGFGFVSFDSFEAADLAIECMHGQYLCNRQVVVQYAFKKDSHNERHGSEAERLLAQRNPNKLKPHTMFAFTAGAAPG 217

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BLAST of mRNA_Ecto-sp13_S_contig10801.724.1 vs. uniprot
Match: A0A2H5NRF6_CITUN (Uncharacterized protein n=1 Tax=Citrus unshiu TaxID=55188 RepID=A0A2H5NRF6_CITUN)

HSP 1 Score: 190 bits (483), Expect = 2.040e-53
Identity = 91/134 (67.91%), Postives = 106/134 (79.10%), Query Frame = 0

Query:    4 DVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPS--KFKVHTLFSVAPGKIEGSAPAAGGNGG 135
            DVGANLFIG LDPDVDEK+LYDTFSAFG I   PK+MRDPDTG S+G+GF+SYD FEASD AIE M+ QYLCNRQI+V YAYKKDT+GERHG  AER+LA+NNPS  K + HTLF+  P  ++ +    G  GG
Sbjct:  109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQVNGTVGG 242

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BLAST of mRNA_Ecto-sp13_S_contig10801.724.1 vs. uniprot
Match: A0A6G0WNH8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNH8_9STRA)

HSP 1 Score: 188 bits (478), Expect = 4.640e-53
Identity = 89/129 (68.99%), Postives = 104/129 (80.62%), Query Frame = 0

Query:    4 DVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPGKIEGSAPAAGG 132
            D+GANLF+G LDPDVDEK+LYDTFSAFG I +TPK+MRDPDT +S+G+GFVSYD FEA+D AIECM+ QYLCNRQI VQYAYKK +  ERHG QAERLLAS+NP+K K HT F+ +   I    P A G
Sbjct:   99 DIGANLFLGNLDPDVDEKLLYDTFSAFGGIVETPKIMRDPDTKVSRGFGFVSYDSFEAADLAIECMNAQYLCNRQIVVQYAYKKGSNNERHGSQAERLLASSNPNKMKPHTRFAFSTPAIPQPPPMAMG 227

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BLAST of mRNA_Ecto-sp13_S_contig10801.724.1 vs. uniprot
Match: W4GDM5_9STRA (Uncharacterized protein n=6 Tax=Aphanomyces TaxID=100860 RepID=W4GDM5_9STRA)

HSP 1 Score: 190 bits (482), Expect = 5.050e-53
Identity = 87/116 (75.00%), Postives = 100/116 (86.21%), Query Frame = 0

Query:    4 DVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVA 119
            D+GANLF+G LDPDVDEK+LYDTFSAFG I +TPK+MRDPDT MS+G+GFVSYD FEA+D AIECM+ QYLCNRQI VQYAYKK +  ERHG QAERLLAS+NP+K K HT F+ A
Sbjct:   98 DIGANLFLGNLDPDVDEKLLYDTFSAFGGIVETPKIMRDPDTKMSRGFGFVSYDSFEAADLAIECMNTQYLCNRQIVVQYAYKKGSNNERHGSQAERLLASSNPNKLKPHTRFAFA 213

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BLAST of mRNA_Ecto-sp13_S_contig10801.724.1 vs. uniprot
Match: A0A067GIM3_CITSI (Uncharacterized protein n=4 Tax=Citrus TaxID=2706 RepID=A0A067GIM3_CITSI)

HSP 1 Score: 192 bits (487), Expect = 5.590e-53
Identity = 92/134 (68.66%), Postives = 107/134 (79.85%), Query Frame = 0

Query:    4 DVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPS--KFKVHTLFSVAPGKIEGSAPAAGGNGG 135
            DVGANLFIG LDPDVDEK+LYDTFSAFG I   PK+MRDPDTG S+G+GF+SYD FEASD AIE M+ QYLCNRQI+V YAYKKDT+GERHG  AER+LA+NNPS  K + HTLF+  P  ++ +  A G  GG
Sbjct:  109 DVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDAAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERILAANNPSSQKSRPHTLFASGPPSLQNAPQANGTVGG 242

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BLAST of mRNA_Ecto-sp13_S_contig10801.724.1 vs. uniprot
Match: A0A6A4C3Q0_9STRA (Uncharacterized protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4C3Q0_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.320e-52
Identity = 83/118 (70.34%), Postives = 100/118 (84.75%), Query Frame = 0

Query:    4 DVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKGYGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAERLLASNNPSKFKVHTLFSVAPG 121
            DVGANLF+G LDP+VDEK+LYDTFSAFG I +TPKVMRDPD+  S+G+GFVS+D FEA+D AIECMH QYLCNRQ+ VQ+A+KKD+R ERHG +AERLLA  NP K + HT+F+  PG
Sbjct:   96 DVGANLFLGNLDPEVDEKLLYDTFSAFGGIVETPKVMRDPDSQASRGFGFVSFDSFEAADLAIECMHGQYLCNRQVVVQFAFKKDSRNERHGSEAERLLAQRNPDKLQPHTMFAFTPG 213

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig10801.724.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig10801.724.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KI11_9PHAE	2.260e-115	97.11	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D8LT41_ECTSI	4.060e-101	76.80	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A835YPU5_9STRA	1.690e-57	75.20	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
F0YAQ8_AURAN	1.410e-53	69.29	Uncharacterized protein n=1 Tax=Aureococcus anopha...	[more]
A0A0W8D7L6_PHYNI	1.600e-53	70.49	Splicing factor 3B subunit 4 n=11 Tax=Peronosporac...	[more]
A0A2H5NRF6_CITUN	2.040e-53	67.91	Uncharacterized protein n=1 Tax=Citrus unshiu TaxI...	[more]
A0A6G0WNH8_9STRA	4.640e-53	68.99	Uncharacterized protein n=1 Tax=Aphanomyces euteic...	[more]
W4GDM5_9STRA	5.050e-53	75.00	Uncharacterized protein n=6 Tax=Aphanomyces TaxID=...	[more]
A0A067GIM3_CITSI	5.590e-53	68.66	Uncharacterized protein n=4 Tax=Citrus TaxID=2706 ...	[more]
A0A6A4C3Q0_9STRA	1.320e-52	70.34	Uncharacterized protein n=3 Tax=Phytophthora TaxID...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..82 e-value: 1.4E-21 score: 87.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 9..79 e-value: 1.2E-16 score: 60.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 7..86 score: 15.733
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..100 e-value: 8.7E-23 score: 82.7
None	No IPR available	PANTHER	PTHR15241	TRANSFORMER-2-RELATED	coord: 11..283
None	No IPR available	PANTHER	PTHR15241:SF62	SPLICING FACTOR 3B SUBUNIT 4	coord: 11..283
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 7..100

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig10801	contig	Ecto-sp13_S_contig10801:453..5126 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig10801.724.1	mRNA_Ecto-sp13_S_contig10801.724.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig10801 453..5126 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig10801.724.1 ID=prot_Ecto-sp13_S_contig10801.724.1|Name=mRNA_Ecto-sp13_S_contig10801.724.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=474bp
QANDVGANLFIGQLDPDVDEKMLYDTFSAFGFITQTPKVMRDPDTGMSKG
YGFVSYDGFEASDKAIECMHNQYLCNRQISVQYAYKKDTRGERHGGQAER
LLASNNPSKFKVHTLFSVAPGKIEGSAPAAGGNGGMGMGGAPPLPPPPPG
SMPPLPPLPPGMPPPPPPSPGMPPLPPGSMPAFMPSSGGPPQPPRGGGGM
PRGMPPPPPPGYGRGYPHHMAPQHMMPHGRMGPNMGMPMGMQRGGGGYNM
YGGPPPPPPPQQMMGMPPPPPNTDMGRPPPLPPSQQPPPPPPASPSPASA
PPPPPPPSASGGSGPPPPPPPSAGSNNGAGGAGGSGAPPPRPVANGGAPP
AGERPDRREGNGPQMGGGGGGRGPPPPPPPPQREMGGAGGEGGGRDMGPG
HQSMGGGGGGGSGMMPPPPPHQQQGMGGGPPRGFPQQQQGGRGGMGRGPP
PPPPPGGRRDNMQPQVGAATRGV*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf