prot_Ecto-sp13_S_contig1076.687.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1076.687.1
Unique Nameprot_Ecto-sp13_S_contig1076.687.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length422
Homology
BLAST of mRNA_Ecto-sp13_S_contig1076.687.1 vs. uniprot
Match: D8LSS5_ECTSI (Neural cell expressed, developmentally down-regulated 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSS5_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 1.580e-115
Identity = 268/420 (63.81%), Postives = 271/420 (64.52%), Query Frame = 0
Query:    1 MRGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASAALPPAGGYSSVTGLSMASAAAGPAMLGVSYADGAVRLWDTGSRACVREMQTQHRGAAAGIVFHPQNPSLVATAGHDGIVRCTDVRVGERKDCGGGDGVLKSIQTDAPLTCVSFHHEGLTLAAGASDGTVRLVDLRTAREVGGPPKKAYAGPTPPSGGVRALAFQRQPPSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVATEVAGIGNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAENTSSSKGNGDGAPGXXXXXXXXXXXXXX-SSSRQRHQDPYGFPNEATAAGGGGTA 419
            MRGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASA LPPAGGYSSVTGLSMASAAAGPAMLGVSYADG VRLWDTGSRACVREMQTQHRGAAAGIVFHPQNP+LVATAGHDG+VRCTDVRVGERKD GGGDGVLKSIQTDAPLTCVSFHHEGL LAAGASDGTVRLVDLRTARE         A PT  S G                                                                                         XXXXXXXXXXXXXXXXXXX     VATEVAG+GN                          XXXXXXXXX  AAENTSSSKGNGD APGXXXXXXXXXXX    SSSRQRHQDPYG PNEA A  GGG A
Sbjct:  115 MRGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASATLPPAGGYSSVTGLSMASAAAGPAMLGVSYADGTVRLWDTGSRACVREMQTQHRGAAAGIVFHPQNPNLVATAGHDGVVRCTDVRVGERKDGGGGDGVLKSIQTDAPLTCVSFHHEGLALAAGASDGTVRLVDLRTAREA-----INSARPTRVSNGXXXXXXXXX--------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXTTTPAVATEVAGVGNPAGKAAAAVAEATPYFSVGSHGGPIQXXXXXXXXX--AAENTSSSKGNGDSAPGXXXXXXXXXXXAALASSSRQRHQDPYGVPNEAPAGVGGGGA 447          
BLAST of mRNA_Ecto-sp13_S_contig1076.687.1 vs. uniprot
Match: UPI001885104B (protein NEDD1-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001885104B)

HSP 1 Score: 89.4 bits (220), Expect = 1.010e-15
Identity = 69/218 (31.65%), Postives = 101/218 (46.33%), Query Frame = 0
Query:    2 RGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASAALPPAGG----YSSVTGLSMASAAAGPAMLGVSYADGAVRLWDTGSRACVREMQTQHRGAAAGIVFHPQNPSLVATAGHDGIVRCTDVRVGERKDCGGGDGVLKSIQTDAPLTCVSFHHEGLTLAAGASDGTVRLVDLRTAREVGGPPKKAYAGPTPPSGGVRALAFQRQPPSR 215
            +GH+ PVT V F   D  VA+    G V++H V      +  +A   P       YS+V           PA+LG ++  G V LWD   R  +    + H   AAG+ F P N  L+A+ G D  + C D +            V++ + +DAPLT V FH +G+ LA G S G V + DLR      G P +++   T     V+ + FQ  PP++
Sbjct:  118 QGHQAPVTRVCFSGSDRHVASASRAGHVLVHNVTSGVVTELPAARSEPQCARDLRYSTVR----------PAVLGAAFDTGHVSLWDVNQRRLLHTFTSGHVAPAAGLAFSPVNDILLASVGLDKRLVCYDPKTRN---------VIQRVVSDAPLTAVDFHADGVQLAVGTSQGRVCVYDLRAP----GRPSRSF---TAHRSSVQRVQFQ--PPAK 307          
BLAST of mRNA_Ecto-sp13_S_contig1076.687.1 vs. uniprot
Match: T2M8K8_HYDVU (Protein NEDD1 n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2M8K8_HYDVU)

HSP 1 Score: 79.7 bits (195), Expect = 1.190e-12
Identity = 62/211 (29.38%), Postives = 96/211 (45.50%), Query Frame = 0
Query:    2 RGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASAALPPAGGYSSVTGLSMASAAAGPAMLGVSYADGAVRLWDTGSRACVREMQTQHRGAAAGIVFHPQNPSLVATAGHDGIVRCTDVRVGERKDCGGGDGVLKSIQTDAPLTCVSFHHEGLTLAAGASDGTVRLVDLRTAREVGGPPKKAYAGPTPPSGGVRALAFQRQP 212
            + H  PVTC  F   D+ +A+    G ++L  V    S +  S      G   ++  L+ +      ++L      GAV LWDT  +  ++   T+H+G    + F P N  L+ + G D  +   DV          G  ++K+I T+ P+TC  F H+G T+AAG + G + L DLR     G  P K     T     VR+++FQ  P
Sbjct:  112 KDHTHPVTCSIFNYNDNTIASSSNHGNILLTNVQSGVSSEPLST-----GENQAIRSLNYSHFVR--SLLASINDSGAVSLWDTKEKKLIKTF-TEHKGPGTKVSFSPLNDMLLCSCGLDKRIIFYDVT---------GKKMVKTINTEGPVTCCEFMHDGCTVAAGTASGRLYLFDLRQ----GSTPVKVV---TAHKTSVRSVSFQMIP 298          
BLAST of mRNA_Ecto-sp13_S_contig1076.687.1 vs. uniprot
Match: UPI00188495EA (protein NEDD1-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI00188495EA)

HSP 1 Score: 78.2 bits (191), Expect = 2.220e-12
Identity = 65/213 (30.52%), Postives = 92/213 (43.19%), Query Frame = 0
Query:    3 GHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASAALPPAGGYSSVTGLSMASAAAGPAMLGVSYADGAVRLWDTGSRACVREMQTQHRGAAAGIVFHPQNPSLVATAGHDGIVRCTDVRVGERKDCGGGDGVLKSIQTDAPLTCVSFHHEGLTLAAGASDGTVRLVDLRTAREVGGPPKKAYAGPTPPSGGVRALAFQRQPPSR 215
            GH+ PVT V F   D  VA+    G     R                   YS+V           PA+LG ++  G V LWD   R  +    + H   AAG+ F P N  L+A+ G D  + C D +            V++ + +DAPLT V FH +G+ LA G S G V + DLR      G P +++   T     V+ + FQ  PP++
Sbjct:    5 GHQAPVTRVCFSGSDRHVASASRAGHPQCARDLR----------------YSTVR----------PAVLGAAFDTGHVSLWDVNQRRLLHTFTSGHVAPAAGLAFSPVNDILLASVGLDKRLVCYDPKTRN---------VIQRVVSDAPLTAVDFHGDGVQLAVGTSQGRVCVYDLRAP----GRPSRSF---TAHRSSVQRVQFQ--PPAK 173          
BLAST of mRNA_Ecto-sp13_S_contig1076.687.1 vs. uniprot
Match: A0A8B6XQQ3_HYDVU (protein NEDD1-like n=2 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XQQ3_HYDVU)

HSP 1 Score: 79.3 bits (194), Expect = 3.560e-12
Identity = 62/211 (29.38%), Postives = 96/211 (45.50%), Query Frame = 0
Query:    2 RGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASAALPPAGGYSSVTGLSMASAAAGPAMLGVSYADGAVRLWDTGSRACVREMQTQHRGAAAGIVFHPQNPSLVATAGHDGIVRCTDVRVGERKDCGGGDGVLKSIQTDAPLTCVSFHHEGLTLAAGASDGTVRLVDLRTAREVGGPPKKAYAGPTPPSGGVRALAFQRQP 212
            + H  PVTC  F   D+ +A+    G ++L  V    S +  S      G   ++  L+ +      ++L      GAV LWDT  +  ++   T+H+G    + F P N  L+ + G D  +   DV          G  ++K+I T+ P+TC  F H+G T+AAG + G + L DLR     G  P K     T     VR+++FQ  P
Sbjct:  112 KDHTHPVTCSIFNYNDNTIASSSNHGNILLTNVQSGISSEPLST-----GENQAIRSLNYSHFVR--SLLASINDSGAVSLWDTKEKKLIKTF-TEHKGPGTKVSFSPLNDMLLCSCGLDKRIIFYDVT---------GKKMVKTINTEGPVTCCEFMHDGCTVAAGTASGRLYLFDLRQ----GSTPVKVV---TAHKTSVRSVSFQMIP 298          
BLAST of mRNA_Ecto-sp13_S_contig1076.687.1 vs. uniprot
Match: A0A7J7JMT3_BUGNE (NEDD1 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JMT3_BUGNE)

HSP 1 Score: 75.9 bits (185), Expect = 4.250e-11
Identity = 48/185 (25.95%), Postives = 89/185 (48.11%), Query Frame = 0
Query:    2 RGHRGPVTCVSFFDRDSCVAAGDERGKVILHR-VADAPSDDEASAALPPAGGYSSVTGLSMASAAAGPAMLGVSYADGAVRLWDTGSRACVREMQTQHRGAAAGIVFHPQNPSLVATAGHDGIVRCTDVRVGERKDCGGGDGVLKSIQTDAPLTCVSFHHEGLTLAAGASDGTVRLVDLRTAREV 185
            +GH+ P+TCV++   D+ +A+  + G+V+LH  + D  +    +  L       ++ GL  +      +M+     D ++ LWDTG+R  + +    H+  A  ++F P N  L+ + G D  +   DV             +++++Q D PL+ +S +  G  +A G   G + L DLR   E+
Sbjct:  111 KGHKSPLTCVTYNYNDTAIASSSKNGEVVLHNAITDLTTRLITTIKL------QAIQGLQYSYHH--HSMIASVSDDASLVLWDTGARRSIHQFTRSHKAPATDLMFSPANDKLLLSCGLDKNIVLYDVL---------NKSIVRTLQVDTPLSTISMNSNGYQIATGTIKGQILLHDLRVGSEI 278          
BLAST of mRNA_Ecto-sp13_S_contig1076.687.1 vs. uniprot
Match: A0A8B6XFL5_HYDVU (zinc finger BED domain-containing protein 4-like n=1 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XFL5_HYDVU)

HSP 1 Score: 70.5 bits (171), Expect = 1.190e-9
Identity = 46/135 (34.07%), Postives = 67/135 (49.63%), Query Frame = 0
Query:   78 GAVRLWDTGSRACVREMQTQHRGAAAGIVFHPQNPSLVATAGHDGIVRCTDVRVGERKDCGGGDGVLKSIQTDAPLTCVSFHHEGLTLAAGASDGTVRLVDLRTAREVGGPPKKAYAGPTPPSGGVRALAFQRQP 212
            GAV LWDT  +  ++   T+H+G    + F P N  L+ + G D  +   DV          G  ++K+I T+ P+TC  F H+G T+AAG + G + L DLR     G  P K     T     VR+++FQ  P
Sbjct:  239 GAVSLWDTKEKKLIKTF-TEHKGPGTKVSFSPLNDMLLCSCGLDKRIIFYDVT---------GKKMVKTINTEGPVTCCEFMHDGCTVAAGTASGRLYLFDLRQ----GSTPVKVV---TAHKTSVRSVSFQMIP 356          
BLAST of mRNA_Ecto-sp13_S_contig1076.687.1 vs. uniprot
Match: A0A433PV80_9FUNG (WD40-repeat-containing domain protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PV80_9FUNG)

HSP 1 Score: 66.2 bits (160), Expect = 6.300e-8
Identity = 56/190 (29.47%), Postives = 90/190 (47.37%), Query Frame = 0
Query:    2 RGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASAALPPAGGYSSVTGLSMAS------AAAGPAMLGVSYADGAVRLWDT-GSRACVREMQTQHRGAA-AGIVFHPQNPSLVATAGHDGIVRCTDV--RVGERKDCGGGDGVLKSIQTDAPLTCVSFHHEGLTLAAGASDGTVRLVDLRT 181
            +GH G ++ +S    +S +A+    G +++H           S  + P      +T L  ++       AAG         DG VR+WD   S + V      H G+   GI F P N  L+A+AG D  +   DV  RV           ++KS+QTD PLT ++F  +G+T+A G+++G + + DLR+
Sbjct:  154 KGHTGTISSISVNIDESLIASASLTGDILIHPKGQ--KHQSYSTLIVPT--EKPITSLEFSTFRRDLVVAAGE--------DGCVRMWDVQASLSPVYTFDAAHYGSVRGGIAFSPYNRYLMASAGLDKRIALYDVDKRV-----------IVKSLQTDEPLTALAFKSDGVTIAVGSANGRIFVYDLRS 320          
BLAST of mRNA_Ecto-sp13_S_contig1076.687.1 vs. uniprot
Match: A0A1R2CSF2_9CILI (ANAPC4_WD40 domain-containing protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CSF2_9CILI)

HSP 1 Score: 64.3 bits (155), Expect = 2.100e-7
Identity = 36/110 (32.73%), Postives = 56/110 (50.91%), Query Frame = 0
Query:   71 LGVSYADGAVRLWDTGSRACVREMQTQHRGAAAGIVFHPQNPSLVATAGHDGIVRCTDVRVGERKDCGGGDGVLKSIQTDAPLTCVSFHHEGLTLAAGASDGTVRLVDLR 180
            LG    +G+V +WD  +++      + H     G+ F   N  L+ T G D  +   D +  E+K       ++K+I+ DAPLTC+SF  +G T A G   GT+ + DLR
Sbjct:  179 LGAGSENGSVYVWDCNTKSVACGFPSFHNSPVTGLAFSAVNHMLMCTGGLDQRINFYDTQ--EKK-------IVKTIEADAPLTCISFCTDGYTFAGGTLYGTILIYDLR 279          
BLAST of mRNA_Ecto-sp13_S_contig1076.687.1 vs. uniprot
Match: A0A6J1BYD2_MOMCH (protein NEDD1 n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1BYD2_MOMCH)

HSP 1 Score: 64.3 bits (155), Expect = 2.460e-7
Identity = 68/218 (31.19%), Postives = 96/218 (44.04%), Query Frame = 0
Query:    1 MRGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASAALPPAGGYSSVTGLSMASAAAGPAMLGVSYADGAVRLWDTGSRACVREMQTQHRGAAAGIVFHPQNPSLVATAGHDGIVRCTDVRVGERKDCGGGDGVLKSIQTDAPLTCVSFHHEGLTLAAGASDGTVRLVDLRTAREVGGPPK-----KAYAGPTPPSGGVRALAFQRQPP 213
            +RGH   +T V +  +D  +A+    G +ILH +A   S   A+    P      V   S  S      +L  +  DG V LWDT  R        QH   AAGI F P N   +A+ G D  +   D   G R+           I  +AP + ++F  +GLTLAAG S+G V   D+R      G P+     +AY+     S  V +L++QR  P
Sbjct:  132 LRGHNNTITGVMYNCKDEHLASISVSGDLILHNLA---SGARAAELKDPHEQVLRVLDYSRFSRH----LLVTAGDDGTVHLWDTTGRNPKVSWLKQHSAPAAGISFSPSNDKTLASVGLDKKLYTYDS--GSRRPS-------SYIAYEAPFSSMAFRDDGLTLAAGTSNGRVVFYDVR------GKPEPFMVLRAYSN----SEAVTSLSWQRLKP 323          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1076.687.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D8LSS5_ECTSI1.580e-11563.81Neural cell expressed, developmentally down-regula... [more]
UPI001885104B1.010e-1531.65protein NEDD1-like n=1 Tax=Pollicipes pollicipes T... [more]
T2M8K8_HYDVU1.190e-1229.38Protein NEDD1 n=1 Tax=Hydra vulgaris TaxID=6087 Re... [more]
UPI00188495EA2.220e-1230.52protein NEDD1-like n=1 Tax=Pollicipes pollicipes T... [more]
A0A8B6XQQ3_HYDVU3.560e-1229.38protein NEDD1-like n=2 Tax=Hydra vulgaris TaxID=60... [more]
A0A7J7JMT3_BUGNE4.250e-1125.95NEDD1 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0... [more]
A0A8B6XFL5_HYDVU1.190e-934.07zinc finger BED domain-containing protein 4-like n... [more]
A0A433PV80_9FUNG6.300e-829.47WD40-repeat-containing domain protein n=1 Tax=Endo... [more]
A0A1R2CSF2_9CILI2.100e-732.73ANAPC4_WD40 domain-containing protein n=1 Tax=Sten... [more]
A0A6J1BYD2_MOMCH2.460e-731.19protein NEDD1 n=1 Tax=Momordica charantia TaxID=36... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 140..178
e-value: 8.5E-4
score: 28.6
coord: 1..33
e-value: 81.0
score: 5.0
coord: 40..84
e-value: 83.0
score: 4.9
coord: 87..128
e-value: 0.0033
score: 26.7
IPR001680WD40 repeatPFAMPF00400WD40coord: 152..177
e-value: 0.0053
score: 17.6
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..142
e-value: 1.3E-18
score: 69.0
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 143..279
e-value: 3.0E-7
score: 31.8
NoneNo IPR availablePANTHERPTHR44414FAMILY NOT NAMEDcoord: 3..183
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 1..187
score: 13.343
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 2..212

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1076contigEcto-sp13_S_contig1076:14153..17288 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1076.687.1mRNA_Ecto-sp13_S_contig1076.687.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1076 12573..19209 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1076.687.1 ID=prot_Ecto-sp13_S_contig1076.687.1|Name=mRNA_Ecto-sp13_S_contig1076.687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=422bp
MRGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASAALPPA
GGYSSVTGLSMASAAAGPAMLGVSYADGAVRLWDTGSRACVREMQTQHRG
AAAGIVFHPQNPSLVATAGHDGIVRCTDVRVGERKDCGGGDGVLKSIQTD
APLTCVSFHHEGLTLAAGASDGTVRLVDLRTAREVGGPPKKAYAGPTPPS
GGVRALAFQRQPPSRSASAAAAAATTAHGAAVAANGGGSTSARASSSSSL
SSSSRSRRPAAAAAGDALNSARPTRMSNGGGGGVEGGGRGYYGEEFGGGG
GGGGERRRPLTTTPAVATEVAGIGNAAGTAAAAAAEAEATQYFSAGSHGG
PIQQQQRYHHQPAAENTSSSKGNGDGAPGAGANAVAAGVPAAASSSRQRH
QDPYGFPNEATAAGGGGTAVW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf