mRNA_Ecto-sp13_S_contig1076.687.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1076.687.1 vs. uniprot
Match: D8LSS5_ECTSI (Neural cell expressed, developmentally down-regulated 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSS5_ECTSI) HSP 1 Score: 499 bits (1285), Expect = 1.300e-162 Identity = 338/493 (68.56%), Postives = 342/493 (69.37%), Query Frame = 3
Query: 123 WNHNGQVVATAGNNGSITVLKLSGSIVPAGVLSAHEKAIRGITFSSKSRKLAAGGDAGVVEVWDLKRNNSRVTMRGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASAALPPAGGYSSVTGLSMASAAAGPAMLGVSYADGAVRLWDTGSRACVREMQTQHRGAAAGIVFHPQNPSLVATAGHDGIVRCTDVRVGERKDCGGGDGVLKSIQTDAPLTCVSFHHEGLTLAAGASDGTVRLVDLRTAREVGGPPKKAYAGPTPPSGGVRALAFQRQPPSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVATEVAGIGNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAAENTSSSKGNGDGAPGAXXXXXXXXXPXXX-SSSRQRHQDPYGFPNEATAAGGGGTA 1598
WNHNGQVVATAG+NGSITVLKLSGSIVPAGVLSAHEKAIRGITFSSKSRKLAAGGDAGVVEVWDLKRNNSRVTMRGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASA LPPAGGYSSVTGLSMASAAAGPAMLGVSYADG VRLWDTGSRACVREMQTQHRGAAAGIVFHPQNP+LVATAGHDG+VRCTDVRVGERKD GGGDGVLKSIQTDAPLTCVSFHHEGL LAAGASDGTVRLVDLRTARE A PT S G XXXXXXXXXXXXXXXXXXX VATEVAG+GN XXXXXXXXX AAENTSSSKGNGD APG XXXXXXXXX SSSRQRHQDPYG PNEA A GGG A
Sbjct: 42 WNHNGQVVATAGDNGSITVLKLSGSIVPAGVLSAHEKAIRGITFSSKSRKLAAGGDAGVVEVWDLKRNNSRVTMRGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASATLPPAGGYSSVTGLSMASAAAGPAMLGVSYADGTVRLWDTGSRACVREMQTQHRGAAAGIVFHPQNPNLVATAGHDGVVRCTDVRVGERKDGGGGDGVLKSIQTDAPLTCVSFHHEGLALAAGASDGTVRLVDLRTAREA-----INSARPTRVSNGXXXXXXXXX--------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXTTTPAVATEVAGVGNPAGKAAAAVAEATPYFSVGSHGGPIQXXXXXXXXX--AAENTSSSKGNGDSAPGXXXXXXXXXXXAALASSSRQRHQDPYGVPNEAPAGVGGGGA 447
BLAST of mRNA_Ecto-sp13_S_contig1076.687.1 vs. uniprot
Match: U9SKY9_RHIID (Uncharacterized protein n=6 Tax=Rhizophagus TaxID=1129544 RepID=U9SKY9_RHIID) HSP 1 Score: 117 bits (292), Expect = 2.240e-23 Identity = 79/272 (29.04%), Postives = 134/272 (49.26%), Query Frame = 3
Query: 84 TTNVAASATNSCCWNHNGQVVATAGNNGSITVLKLSGSIVPAGVLSAHEKA----IRGITFSSKSRKLAAGGDAGVVEVWDLKRNNSRVTMRGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASAALPPAGGYSSVTGLSMASAAAGPAMLGVSYADGAVRLWDTG-SRACVREMQTQHRGAAAGIVFHPQNPSLVATAGHDGIVRCTDVRVGERKDCGGGDGVLKSIQTDAPLTCVSFHHEGLTLAAGASDGTVRLVDLRT 884
T N ++A N W+H+ Q++A AGN+G++T+ G+++ + + +E I + F +KS+ + GG +V VWD K + +GHR +TC+ +S VA+ G +I+H + + + + + L + G +L DG++RLWDTG S +++ + H GI F P N L+ +AG D + DV E LK+I TD+PLT ++F + +T+AAG G + + DLR+
Sbjct: 47 TPNNTSTAVNVARWSHDNQLLAVAGNDGTLTIHNSQGTLIETILSNDNESNDYADINALRFLNKSQYILFGGSDKIVNVWDRKESTFIEPFKGHRSTITCIDLNLDESIVASSALNGNIIIHNRQKSNTCNNLTVLT-----KQPINVLQYSYVKRG--LLAAGGDDGSLRLWDTGVSTTAIQKYEKAHHSEIKGIAFSPSNQHLLISAGMDKRIVLYDVSKKES---------LKNIHTDSPLTALAFRADCVTIAAGTLQGKILIYDLRS 302
BLAST of mRNA_Ecto-sp13_S_contig1076.687.1 vs. uniprot
Match: A0A2Z6RF52_9GLOM (Uncharacterized protein n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6RF52_9GLOM) HSP 1 Score: 112 bits (279), Expect = 8.330e-22 Identity = 81/283 (28.62%), Postives = 137/283 (48.41%), Query Frame = 3
Query: 66 GLELRK-TTNVAASATNSCCWNHNGQVVATAGNNGSITVLKLSGSIVPAGVLSAHEKA----IRGITFSSKSRKLAAGGDAGVVEVWDLKRNNSRVTMRGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASAALPPAGGYSSVTGLSMASAAAGPAMLGVSYADGAVRLWDTG-SRACVREMQTQHRGAAAGIVFHPQNPSLVATAGHDGIVRCTDVRVGERKDCGGGDGVLKSIQTDAPLTCVSFHHEGLTLAAGASDGTVRLVDLRTAREV 896
G+E+ T N +A N W+H+ Q++A AGN+G++T+ G+++ + S +E + I + F +KS+ + GG ++ VWD K + +GHR +TC+ +S VA+ G +I+H + + + + + L + G +L DG++RLWDTG S ++ H GI F P N +A+AG D + D R E LK+I D+PLT ++F + +T+AAG G + + DLR+ +V
Sbjct: 40 GVEVASFTPNNTLTAINVVRWSHDNQLLAVAGNDGTLTIHNSQGTLMETILSSDNESSDYADINALRFLNKSQYVLFGGSDKIINVWDRKESIFIEPFKGHRSTITCIDLNLDESIVASSASNGNIIIHNRQKSNTWNNLIVST-----KQPINVLQYSYVKRG--LLAAGGNDGSLRLWDTGVSTTAIQIYDEAHYSEIKGIAFSPSNQHFLASAGMDKRIVLYDDRKKES---------LKNIHADSPLTALAFRADCVTIAAGTQQGKILVYDLRSHNKV 306
BLAST of mRNA_Ecto-sp13_S_contig1076.687.1 vs. uniprot
Match: UPI001885104B (protein NEDD1-like n=1 Tax=Pollicipes pollicipes TaxID=41117 RepID=UPI001885104B) HSP 1 Score: 108 bits (270), Expect = 2.200e-21 Identity = 88/303 (29.04%), Postives = 134/303 (44.22%), Query Frame = 3
Query: 120 CWNHNGQVVATAGNNGSITVLKLSGSIVPAGVLSAHEKAIRGIT----------FSSKSRKLAAGGDAGVVEVWDLKRNNSRVTMRGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASAALPPAGG----YSSVTGLSMASAAAGPAMLGVSYADGAVRLWDTGSRACVREMQTQHRGAAAGIVFHPQNPSLVATAGHDGIVRCTDVRVGERKDCGGGDGVLKSIQTDAPLTCVSFHHEGLTLAAGASDGTVRLVDLRTAREVGGPPKKAYAGPTPPSGGVRALAFQRQPPSR 986
CW+ +G +VA+ V+ +V GV + + + T +S SR + G +G V++WD K +GH+ PVT V F D VA+ G V++H V + +A P YS+V PA+LG ++ G V LWD R + + H AAG+ F P N L+A+ G D + C D + V++ + +DAPLT V FH +G+ LA G S G V + DLR G P +++ T V+ + FQ PP++
Sbjct: 41 CWSRDGSMVAS--------VVSRQAQLVVTGVSAHSTRQLTAATDLPKATCCRFCTSNSRYICVGSHSGGVDLWDNKNGKLAKQYQGHQAPVTRVCFSGSDRHVASASRAGHVLVHNVTSGVVTELPAARSEPQCARDLRYSTVR----------PAVLGAAFDTGHVSLWDVNQRRLLHTFTSGHVAPAAGLAFSPVNDILLASVGLDKRLVCYDPKTRN---------VIQRVVSDAPLTAVDFHADGVQLAVGTSQGRVCVYDLRAP----GRPSRSF---TAHRSSVQRVQFQ--PPAK 307
BLAST of mRNA_Ecto-sp13_S_contig1076.687.1 vs. uniprot
Match: A0A397T868_9GLOM (WD40-repeat-containing domain protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397T868_9GLOM) HSP 1 Score: 107 bits (268), Expect = 1.870e-20 Identity = 75/267 (28.09%), Postives = 131/267 (49.06%), Query Frame = 3
Query: 99 ASATNSCCWNHNGQVVATAGNNGSITVLKLSGSI---VPAGVLSAHEKA-IRGITFSSKSRKLAAGGDAGVVEVWDLKRNNSRVTMRGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASAALPPAGGYSSVTGLSMASAAAGPAMLGVSYADGAVRLWDTG-SRACVREMQTQHRGAAAGIVFHPQNPSLVATAGHDGIVRCTDVRVGERKDCGGGDGVLKSIQTDAPLTCVSFHHEGLTLAAGASDGTVRLVDLRT 884
++A N W+H+ Q++A AGN+G++T+ G++ + + V + + A I + F +KS+ + GG ++ VWD K + +GHR +TC+ +S VA+ G +I+H + + + + S+ L + G +L DG++RLWDT S ++ + H GI F P N L+ +AG D + DV G +LK+I T++ LT ++F + T+AAG G + + DLR+
Sbjct: 51 STAVNVARWSHDNQLLAVAGNDGTLTIHDKQGNLKETILSNVNGSDDYADINALRFLNKSQCVLFGGSDKIINVWDRKESTLIEPFKGHRSTITCIDLNLDESIVASSALNGNIIIHNRQKSNTWNNLTVLT-----KQSINVLQYSYVKRG--LLAAGGGDGSLRLWDTSVSTTAIQTYEKAHHSEIKGIAFSPSNQHLLISAGMDKRIVLYDV---------GKKEILKNIHTESSLTALAFRADNFTIAAGTLQGKILIYDLRS 301
BLAST of mRNA_Ecto-sp13_S_contig1076.687.1 vs. uniprot
Match: A0A8J5XZD7_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XZD7_DIALT) HSP 1 Score: 106 bits (265), Expect = 4.800e-20 Identity = 99/318 (31.13%), Postives = 144/318 (45.28%), Query Frame = 3
Query: 78 RKTTNVAASATNSCCWNHNGQVVATAGNNGSITVLKLSGS--IVPAGVLSAHEKAIRGITFSSKSRKLAAGGDAGVVEVWDLKRNNSRVTMRGHRGPVTCVSFFDRDS---------CVAAGDERGKVILHRVADAPSDDEASAALPPAGGYSSVTGLSMASAAAGP---AMLGVSYADGAVRLWDT------GSRACVREMQT-QHRGAAAGIVFHPQNPSLVATAGHDGIVRCTDVRVGERKDCGGGDGVLKSIQTDAPLTCVSFHHEGLTLAAGASDGTVRLVDLRTAREVGGPPKKAYAGPTPPSGGVRALAFQ 968
R+ T + S WNHN V+AT+G++GS+ + +G+ ++ A + FSS+SR L AGGD GVV VWDL ++ + H PV+C+ + DS + AG G++ H +AD AS + A G L+ + P A L + + GAVRLWD G A V Q +H A G+ + N L+A+ G DG + D +R +K + L CVSF +G+T+A G GT+ + DLR + P + AYA P V LAFQ
Sbjct: 23 RRVTTHGDAFVRSVRWNHNNMVLATSGDDGSVCLSADAGTRDLMMAEREHGSSAVSLALAFSSRSRFLGAGGDDGVVRVWDLSQSGRPRRVHAHTSPVSCLCWAPPDSDDESARGFEMLVAGSSSGEITTHALADGRPPACASRLVLSARGQP----LACTAVQFSPLRRAALASADSSGAVRLWDVAHARGGGGDAPVAAHQFGEHELACTGLAWSSVNHLLLASVGADGKLAFYDTA--QRVP-------VKRVALGCALGCVSFLQDGVTIAVGGEAGTIHVFDLRMSLA---PMRTAYASTAHP---VTDLAFQ 321
BLAST of mRNA_Ecto-sp13_S_contig1076.687.1 vs. uniprot
Match: T2M8K8_HYDVU (Protein NEDD1 n=1 Tax=Hydra vulgaris TaxID=6087 RepID=T2M8K8_HYDVU) HSP 1 Score: 103 bits (257), Expect = 5.410e-20 Identity = 86/304 (28.29%), Postives = 137/304 (45.07%), Query Frame = 3
Query: 69 LELRKTTNVAASATNSCCWNHNGQVVATAGNNGSITVLKLSGSIVPA-GVLSAHEKAIRGITFSSKSRKLAAGGDAGVVEVWDLKRNNSRVTMRGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASAALPPAGGYSSVTGLSMASAAAGPAMLGVSYADGAVRLWDTGSRACVREMQTQHRGAAAGIVFHPQNPSLVATAGHDGIVRCTDVRVGERKDCGGGDGVLKSIQTDAPLTCVSFHHEGLTLAAGASDGTVRLVDLRTAREVGGPPKKAYAGPTPPSGGVRALAFQRQP 977
L L N + SC + NGQ+VA A + V L + ++ E++ ++F+ SR L + G VV +WD+K ++ + H PVTC F D+ +A+ G ++L V S + S G ++ L+ + ++L GAV LWDT + ++ T+H+G + F P N L+ + G D + DV G ++K+I T+ P+TC F H+G T+AAG + G + L DLR G P K T VR+++FQ P
Sbjct: 21 LNLHSVKNGTNANLTSCSCSPNGQLVAYAHEGEGLNVASLQEDDQDVINIPTSCEQS--SVSFNGNSRYLVSSGVDHVVCIWDIKSKTAKRIYKDHTHPVTCSIFNYNDNTIASSSNHGNILLTNVQSGVSSEPLST-----GENQAIRSLNYSHFVR--SLLASINDSGAVSLWDTKEKKLIKTF-TEHKGPGTKVSFSPLNDMLLCSCGLDKRIIFYDVT---------GKKMVKTINTEGPVTCCEFMHDGCTVAAGTASGRLYLFDLRQ----GSTPVKVV---TAHKTSVRSVSFQMIP 298
BLAST of mRNA_Ecto-sp13_S_contig1076.687.1 vs. uniprot
Match: D8SN77_SELML (Uncharacterized protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8SN77_SELML) HSP 1 Score: 105 bits (262), Expect = 1.140e-19 Identity = 90/297 (30.30%), Postives = 138/297 (46.46%), Query Frame = 3
Query: 102 SATNSCCWNHNGQVVATAGNNGSITVL--KLSGSI-VPAGVLSAHEKAIRGITFSSKS-RKLAAGGDAGVVEVWDLKRNNSRVTMRGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASAALPPAGGYSSVTGLSMASAAAGPAMLGVSYADGAVRLWDTGSRACVREMQTQHRGAAAGIVFHPQNPSLVATAGHDGIVRCTDVRVGERKDCGGGDGVLKSIQTDAPLTCVSFHHEGLTLAAGASDGTVRLVDLRTAREVGGPPKKAYAGPTPPSGGVRALAFQRQPP 980
S NS WNH V+A+AG++G I++ KL + + + + E++I + FS+KS R L +GG A VV +WDL+R ++GH +T V + +D VA+ G +ILH +A S + P V S S +L S DG+V W+T R+ QH G+ F P N +VA+ G D + DV V + S+ + P + +F +G+ LAAG +DG V D+R + +AY S V +L++QR P
Sbjct: 45 SQINSVKWNHTNMVLASAGDDGKISLWTQKLQSVVTIASDPAESVEESILAMNFSTKSSRYLCSGGTAKVVRIWDLQRKRCIKWLKGHADTITSVMYNCKDEHVASASVAGDLILHNLA---SGSRIAELKDPHRQVLRVLEFSRLSRH----LLVTSGDDGSVHFWETTGRSPKISWIKQHLAPTTGVCFSPPNDKVVASVGLDKKLYIFDVGVKRP---------VHSVACETPYSSAAFRDDGVILAAGTNDGRVVFYDIRGGKPQPSMALRAYGA----SKAVTSLSWQRSNP 321
BLAST of mRNA_Ecto-sp13_S_contig1076.687.1 vs. uniprot
Match: A0A5A7PQL7_STRAF (Transducin/WD40 repeat-like superfamily protein n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7PQL7_STRAF) HSP 1 Score: 105 bits (261), Expect = 1.250e-19 Identity = 82/265 (30.94%), Postives = 127/265 (47.92%), Query Frame = 3
Query: 111 NSCCWNHNGQVVATAGNNGSITVLKLSGS---IVPA----GVLSAHEKAIRGITFSSK-SRKLAAGGDAGVVEVWDLKRNNSRVTMRGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASAALPPAGGYSSVTGLSMASAAAGPAMLGVSYADGAVRLWDTGSRACVREMQTQHRGAAAGIVFHPQNPSLVATAGHDGIVRCTDVRVGERKDCGGGDGVLKSIQTDAPLTCVSFHHEGLTLAAGASDGTVRLVDLR 881
NS WNHN V+A+AG +G I++ + +G +VPA G + ++I I+FS+K SR L +GG VV +WDL+ ++GH +T V + +D +A+ +G +ILH +A S A+ P G S S +L + DG++ LWDT R+ QH + + F P N ++A+ G D + D + C I +AP + ++F +GL LAAG S G V D+R
Sbjct: 45 NSVKWNHNNLVLASAGEDGKISLWRKNGQSLWMVPAKNARGEIVEPSESISTISFSNKGSRYLCSGGTGQVVRIWDLQNKRCVKWLKGHSDTITGVMYNCKDEHIASVSRKGDLILHNLA---SGARAAELRDPNGQVLGALDYSRTSRH----LLVTAGDDGSIHLWDTTGRSPKASWLKQHSAPTSAVSFSPSNDKVIASVGLDMKLYTFDTGSRKPSSC---------IPYEAPFSSLAFADDGLILAAGTSTGQVVFYDVR 293
BLAST of mRNA_Ecto-sp13_S_contig1076.687.1 vs. uniprot
Match: A0A8B6XQQ3_HYDVU (protein NEDD1-like n=2 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XQQ3_HYDVU) HSP 1 Score: 103 bits (256), Expect = 5.740e-19 Identity = 86/304 (28.29%), Postives = 137/304 (45.07%), Query Frame = 3
Query: 69 LELRKTTNVAASATNSCCWNHNGQVVATAGNNGSITVLKLSGSIVPA-GVLSAHEKAIRGITFSSKSRKLAAGGDAGVVEVWDLKRNNSRVTMRGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASAALPPAGGYSSVTGLSMASAAAGPAMLGVSYADGAVRLWDTGSRACVREMQTQHRGAAAGIVFHPQNPSLVATAGHDGIVRCTDVRVGERKDCGGGDGVLKSIQTDAPLTCVSFHHEGLTLAAGASDGTVRLVDLRTAREVGGPPKKAYAGPTPPSGGVRALAFQRQP 977
L L N + SC + NGQ+VA A + V L + ++ E++ ++F+ SR L + G VV +WD+K ++ + H PVTC F D+ +A+ G ++L V S + S G ++ L+ + ++L GAV LWDT + ++ T+H+G + F P N L+ + G D + DV G ++K+I T+ P+TC F H+G T+AAG + G + L DLR G P K T VR+++FQ P
Sbjct: 21 LNLHSVKNGTNANLTSCSCSPNGQLVAYAHEGEGLNVASLQEDDQDVINIPTSCEQS--SVSFNGNSRYLVSSGVDHVVCIWDIKSKTAKRIYKDHTHPVTCSIFNYNDNTIASSSNHGNILLTNVQSGISSEPLST-----GENQAIRSLNYSHFVR--SLLASINDSGAVSLWDTKEKKLIKTF-TEHKGPGTKVSFSPLNDMLLCSCGLDKRIIFYDVT---------GKKMVKTINTEGPVTCCEFMHDGCTVAAGTASGRLYLFDLRQ----GSTPVKVV---TAHKTSVRSVSFQMIP 298 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1076.687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1076.687.1 >prot_Ecto-sp13_S_contig1076.687.1 ID=prot_Ecto-sp13_S_contig1076.687.1|Name=mRNA_Ecto-sp13_S_contig1076.687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=422bp MRGHRGPVTCVSFFDRDSCVAAGDERGKVILHRVADAPSDDEASAALPPAback to top mRNA from alignment at Ecto-sp13_S_contig1076:12573..19209+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1076.687.1 ID=mRNA_Ecto-sp13_S_contig1076.687.1|Name=mRNA_Ecto-sp13_S_contig1076.687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6637bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1076:12573..19209+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1076:12573..19209+ >mRNA_Ecto-sp13_S_contig1076.687.1 ID=mRNA_Ecto-sp13_S_contig1076.687.1|Name=mRNA_Ecto-sp13_S_contig1076.687.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1266bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1076:12573..19209+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |