prot_Ecto-sp13_S_contig10687.630.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10687.630.1
Unique Nameprot_Ecto-sp13_S_contig10687.630.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length114
Homology
BLAST of mRNA_Ecto-sp13_S_contig10687.630.1 vs. uniprot
Match: D7FK16_ECTSI (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK16_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 9.210e-76
Identity = 108/113 (95.58%), Postives = 110/113 (97.35%), Query Frame = 0
Query:    1 GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMVVIGICTHLGCVPLPDTGDYNGCFCPCHGSHYDTAGRIRKGPAPLNLEIPPYKFLTKTSILVG 113
            GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFM+VIGICTHLGCVPLPD GDYNG FCPCHGSHY+TAGRI KGPAPLNLEIPPYKFLTKTSILVG
Sbjct:  139 GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMIVIGICTHLGCVPLPDAGDYNGSFCPCHGSHYETAGRIPKGPAPLNLEIPPYKFLTKTSILVG 251          
BLAST of mRNA_Ecto-sp13_S_contig10687.630.1 vs. uniprot
Match: B8BX01_THAPS (Cytochrome b-c1 complex subunit Rieske, mitochondrial (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BX01_THAPS)

HSP 1 Score: 174 bits (442), Expect = 8.480e-54
Identity = 76/113 (67.26%), Postives = 91/113 (80.53%), Query Frame = 0
Query:    1 GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMVVIGICTHLGCVPLPDTGDYNGCFCPCHGSHYDTAGRIRKGPAPLNLEIPPYKFLTKTSILVG 113
            G ++  KWRGKPVFI+ R  A I  EA V +  LRD+ETD++R LKPE++VV+GICTHLGCVP+   GDYNG FCPCHGSHYD +GRIRKGPAPLNLE+PPYKF  +T IL+G
Sbjct:   56 GKTITVKWRGKPVFIRHRTPAEISTEAAVSLSQLRDEETDDDRTLKPEWLVVLGICTHLGCVPISGAGDYNGWFCPCHGSHYDVSGRIRKGPAPLNLEVPPYKFTEETKILIG 168          
BLAST of mRNA_Ecto-sp13_S_contig10687.630.1 vs. uniprot
Match: K0SJ93_THAOC (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SJ93_THAOC)

HSP 1 Score: 176 bits (446), Expect = 2.480e-53
Identity = 78/113 (69.03%), Postives = 91/113 (80.53%), Query Frame = 0
Query:    1 GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMVVIGICTHLGCVPLPDTGDYNGCFCPCHGSHYDTAGRIRKGPAPLNLEIPPYKFLTKTSILVG 113
            G ++  KWRGKPVFI+ R  A I  EAGV +  LRD+ETD++R LKPE++VV+GICTHLGCVP+   GDYNG FCPCHGSHYD +GRIRKGPAPLNLEIPPYKF   T IL+G
Sbjct:  137 GKTITVKWRGKPVFIRHRTPAEISAEAGVALSSLRDEETDDDRTLKPEWLVVLGICTHLGCVPISGAGDYNGWFCPCHGSHYDISGRIRKGPAPLNLEIPPYKFTGDTKILIG 249          
BLAST of mRNA_Ecto-sp13_S_contig10687.630.1 vs. uniprot
Match: A0A7S1ZAC5_TRICV (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZAC5_TRICV)

HSP 1 Score: 174 bits (442), Expect = 9.990e-53
Identity = 78/113 (69.03%), Postives = 91/113 (80.53%), Query Frame = 0
Query:    1 GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMVVIGICTHLGCVPLPDTGDYNGCFCPCHGSHYDTAGRIRKGPAPLNLEIPPYKFLTKTSILVG 113
            G ++  KWRGKPVFI+ R ++ I  E  V +E LRDQETDEER LKP+++VV+GICTHLGCVP+   G+YNG FCPCHGSHYD +GRIRKGPAPLNLEIPPYKFL    ILVG
Sbjct:  137 GNTITVKWRGKPVFIRHRTESEISTEGSVPLEYLRDQETDEERTLKPQWLVVLGICTHLGCVPISGAGEYNGWFCPCHGSHYDVSGRIRKGPAPLNLEIPPYKFLEDAKILVG 249          
BLAST of mRNA_Ecto-sp13_S_contig10687.630.1 vs. uniprot
Match: A0A7S2LHJ5_9STRA (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LHJ5_9STRA)

HSP 1 Score: 173 bits (439), Expect = 3.190e-52
Identity = 76/113 (67.26%), Postives = 92/113 (81.42%), Query Frame = 0
Query:    1 GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMVVIGICTHLGCVPLPDTGDYNGCFCPCHGSHYDTAGRIRKGPAPLNLEIPPYKFLTKTSILVG 113
            G ++  KWRGKPVFI+ R  A I  EA V + +LRD+ETD++R LKPE++VV+GICTHLGCVPL   GD+NG FCPCHGSHYD +GRIRKGPAPLNLE+PPYKF  +T IL+G
Sbjct:  141 GKTITVKWRGKPVFIRHRTPAEISGEANVSLAELRDEETDDDRTLKPEWLVVLGICTHLGCVPLSGAGDFNGWFCPCHGSHYDISGRIRKGPAPLNLEVPPYKFTEETKILIG 253          
BLAST of mRNA_Ecto-sp13_S_contig10687.630.1 vs. uniprot
Match: A0A1Z5JD98_FISSO (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JD98_FISSO)

HSP 1 Score: 172 bits (436), Expect = 5.060e-52
Identity = 71/113 (62.83%), Postives = 94/113 (83.19%), Query Frame = 0
Query:    1 GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMVVIGICTHLGCVPLPDTGDYNGCFCPCHGSHYDTAGRIRKGPAPLNLEIPPYKFLTKTSILVG 113
            G +++  WRGKP++I+RR  A IE+E+ V ++ LRDQE D +R +KPEF+VV+GIC HLGCVPLP+ GD+ G FCPCHGSHYD +GRIR GPAPLNLE+PPYKF++ T++L+G
Sbjct:  121 GKTIMVDWRGKPIYIRRRSAAEIEKESQVQLDHLRDQEADSDRTIKPEFLVVVGICPHLGCVPLPNAGDFGGFFCPCHGSHYDVSGRIRMGPAPLNLEVPPYKFISDTTVLIG 233          
BLAST of mRNA_Ecto-sp13_S_contig10687.630.1 vs. uniprot
Match: A0A7S3L460_9STRA (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L460_9STRA)

HSP 1 Score: 171 bits (434), Expect = 1.080e-51
Identity = 76/113 (67.26%), Postives = 91/113 (80.53%), Query Frame = 0
Query:    1 GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMVVIGICTHLGCVPLPDTGDYNGCFCPCHGSHYDTAGRIRKGPAPLNLEIPPYKFLTKTSILVG 113
            G ++  KWRGKPVFI+RR  A I RE  V ME LRDQE D ER +KPE++VV+GIC HLGCVP+ + GDY G FCPCHGSHYDT+GRIRKGP+PLNLE+PPYKF+ +  I+VG
Sbjct:  123 GKTITVKWRGKPVFIRRRTPAEISREEAVPMEVLRDQELDSERVIKPEYIVVLGICPHLGCVPVSNAGDYGGWFCPCHGSHYDTSGRIRKGPSPLNLEVPPYKFIDEKVIMVG 235          
BLAST of mRNA_Ecto-sp13_S_contig10687.630.1 vs. uniprot
Match: B7FYB7_PHATC (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYB7_PHATC)

HSP 1 Score: 169 bits (428), Expect = 1.610e-51
Identity = 76/113 (67.26%), Postives = 91/113 (80.53%), Query Frame = 0
Query:    1 GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMVVIGICTHLGCVPLPDTGDYNGCFCPCHGSHYDTAGRIRKGPAPLNLEIPPYKFLTKTSILVG 113
            G ++  KWRGKPVFI+RR  A I  EA V ME LRDQETD +R LKPEF+VV+GIC HLGCVP+ + GD+ G FCPCHGSHYD +GRIRKGP+PLNLE+PPYKF+ +  IL+G
Sbjct:   67 GKTITAKWRGKPVFIRRRSAAEIATEAAVPMEYLRDQETDADRTLKPEFIVVLGICPHLGCVPVSNAGDFGGWFCPCHGSHYDKSGRIRKGPSPLNLEVPPYKFIDENVILMG 179          
BLAST of mRNA_Ecto-sp13_S_contig10687.630.1 vs. uniprot
Match: W7TQL4_9STRA (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQL4_9STRA)

HSP 1 Score: 169 bits (428), Expect = 7.780e-51
Identity = 71/113 (62.83%), Postives = 89/113 (78.76%), Query Frame = 0
Query:    1 GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMVVIGICTHLGCVPLPDTGDYNGCFCPCHGSHYDTAGRIRKGPAPLNLEIPPYKFLTKTSILVG 113
            G  +  KWRGKP+FI+ R  A I+RE  V M +LRD E D  R  +PE+++++GICTHLGCVP+ + GDY+G FCPCHGSHYD +GRIRKGPAPLN+EIPPYKFLT T +L+G
Sbjct:  119 GQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231          
BLAST of mRNA_Ecto-sp13_S_contig10687.630.1 vs. uniprot
Match: A0A7S0CB90_9STRA (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CB90_9STRA)

HSP 1 Score: 167 bits (424), Expect = 2.410e-50
Identity = 74/113 (65.49%), Postives = 89/113 (78.76%), Query Frame = 0
Query:    1 GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMVVIGICTHLGCVPLPDTGDYNGCFCPCHGSHYDTAGRIRKGPAPLNLEIPPYKFLTKTSILVG 113
            G ++  KWRGKP+F++ R  + I  E  V M  LRDQE D+ER  KPE++VV+GICTHLGCVPL + GD+NG FCPCHGSHYDT+GRIRKGPAPLNLEIPPYKF+    IL+G
Sbjct:  110 GNTITVKWRGKPIFVRHRTASEISTEEAVPMGHLRDQEADDERYHKPEWLVVLGICTHLGCVPLGNAGDFNGWFCPCHGSHYDTSGRIRKGPAPLNLEIPPYKFIEDKKILIG 222          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10687.630.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FK16_ECTSI9.210e-7695.58Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
B8BX01_THAPS8.480e-5467.26Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
K0SJ93_THAOC2.480e-5369.03Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
A0A7S1ZAC5_TRICV9.990e-5369.03Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
A0A7S2LHJ5_9STRA3.190e-5267.26Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
A0A1Z5JD98_FISSO5.060e-5262.83Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
A0A7S3L460_9STRA1.080e-5167.26Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
B7FYB7_PHATC1.610e-5167.26Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
W7TQL4_9STRA7.780e-5162.83Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
A0A7S0CB90_9STRA2.410e-5065.49Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005805Rieske iron-sulphur protein, C-terminalPRINTSPR00162RIESKEcoord: 73..85
score: 65.19
coord: 85..97
score: 69.62
coord: 51..62
score: 68.12
IPR017941Rieske [2Fe-2S] iron-sulphur domainPFAMPF00355Rieskecoord: 41..100
e-value: 1.5E-11
score: 44.1
IPR017941Rieske [2Fe-2S] iron-sulphur domainPROSITEPS51296RIESKEcoord: 17..111
score: 15.49
IPR006317Ubiquinol-cytochrome c reductase, iron-sulphur subunitTIGRFAMTIGR01416TIGR01416coord: 1..113
e-value: 4.7E-42
score: 141.9
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyGENE3D2.102.10.10coord: 1..113
e-value: 3.1E-43
score: 148.8
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilySUPERFAMILY50022ISP domaincoord: 3..106
IPR014349Rieske iron-sulphur proteinPANTHERPTHR10134CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIALcoord: 1..113
NoneNo IPR availablePANTHERPTHR10134:SF1CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL-RELATEDcoord: 1..113

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10687contigEcto-sp13_S_contig10687:2918..4978 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10687.630.1mRNA_Ecto-sp13_S_contig10687.630.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10687 2918..4978 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10687.630.1 ID=prot_Ecto-sp13_S_contig10687.630.1|Name=mRNA_Ecto-sp13_S_contig10687.630.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp
GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFM
VVIGICTHLGCVPLPDTGDYNGCFCPCHGSHYDTAGRIRKGPAPLNLEIP
PYKFLTKTSILVG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005805Rieske_Fe-S_prot_C
IPR017941Rieske_2Fe-2S
IPR006317Ubiquinol_cyt_c_Rdtase_Fe-S-su
IPR036922Rieske_2Fe-2S_sf
IPR014349Rieske_Fe-S_prot