mRNA_Ecto-sp13_S_contig10687.630.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10687.630.1 vs. uniprot
Match: D7FK16_ECTSI (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK16_ECTSI) HSP 1 Score: 233 bits (594), Expect = 9.210e-76 Identity = 108/113 (95.58%), Postives = 110/113 (97.35%), Query Frame = 1
Query: 1 GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMVVIGICTHLGCVPLPDTGDYNGCFCPCHGSHYDTAGRIRKGPAPLNLEIPPYKFLTKTSILVG 339
GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFM+VIGICTHLGCVPLPD GDYNG FCPCHGSHY+TAGRI KGPAPLNLEIPPYKFLTKTSILVG
Sbjct: 139 GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMIVIGICTHLGCVPLPDAGDYNGSFCPCHGSHYETAGRIPKGPAPLNLEIPPYKFLTKTSILVG 251
BLAST of mRNA_Ecto-sp13_S_contig10687.630.1 vs. uniprot
Match: B8BX01_THAPS (Cytochrome b-c1 complex subunit Rieske, mitochondrial (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BX01_THAPS) HSP 1 Score: 174 bits (442), Expect = 8.480e-54 Identity = 76/113 (67.26%), Postives = 91/113 (80.53%), Query Frame = 1
Query: 1 GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMVVIGICTHLGCVPLPDTGDYNGCFCPCHGSHYDTAGRIRKGPAPLNLEIPPYKFLTKTSILVG 339
G ++ KWRGKPVFI+ R A I EA V + LRD+ETD++R LKPE++VV+GICTHLGCVP+ GDYNG FCPCHGSHYD +GRIRKGPAPLNLE+PPYKF +T IL+G
Sbjct: 56 GKTITVKWRGKPVFIRHRTPAEISTEAAVSLSQLRDEETDDDRTLKPEWLVVLGICTHLGCVPISGAGDYNGWFCPCHGSHYDVSGRIRKGPAPLNLEVPPYKFTEETKILIG 168
BLAST of mRNA_Ecto-sp13_S_contig10687.630.1 vs. uniprot
Match: K0SJ93_THAOC (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SJ93_THAOC) HSP 1 Score: 176 bits (446), Expect = 2.480e-53 Identity = 78/113 (69.03%), Postives = 91/113 (80.53%), Query Frame = 1
Query: 1 GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMVVIGICTHLGCVPLPDTGDYNGCFCPCHGSHYDTAGRIRKGPAPLNLEIPPYKFLTKTSILVG 339
G ++ KWRGKPVFI+ R A I EAGV + LRD+ETD++R LKPE++VV+GICTHLGCVP+ GDYNG FCPCHGSHYD +GRIRKGPAPLNLEIPPYKF T IL+G
Sbjct: 137 GKTITVKWRGKPVFIRHRTPAEISAEAGVALSSLRDEETDDDRTLKPEWLVVLGICTHLGCVPISGAGDYNGWFCPCHGSHYDISGRIRKGPAPLNLEIPPYKFTGDTKILIG 249
BLAST of mRNA_Ecto-sp13_S_contig10687.630.1 vs. uniprot
Match: A0A7S1ZAC5_TRICV (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZAC5_TRICV) HSP 1 Score: 174 bits (442), Expect = 9.990e-53 Identity = 78/113 (69.03%), Postives = 91/113 (80.53%), Query Frame = 1
Query: 1 GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMVVIGICTHLGCVPLPDTGDYNGCFCPCHGSHYDTAGRIRKGPAPLNLEIPPYKFLTKTSILVG 339
G ++ KWRGKPVFI+ R ++ I E V +E LRDQETDEER LKP+++VV+GICTHLGCVP+ G+YNG FCPCHGSHYD +GRIRKGPAPLNLEIPPYKFL ILVG
Sbjct: 137 GNTITVKWRGKPVFIRHRTESEISTEGSVPLEYLRDQETDEERTLKPQWLVVLGICTHLGCVPISGAGEYNGWFCPCHGSHYDVSGRIRKGPAPLNLEIPPYKFLEDAKILVG 249
BLAST of mRNA_Ecto-sp13_S_contig10687.630.1 vs. uniprot
Match: A0A7S2LHJ5_9STRA (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LHJ5_9STRA) HSP 1 Score: 173 bits (439), Expect = 3.190e-52 Identity = 76/113 (67.26%), Postives = 92/113 (81.42%), Query Frame = 1
Query: 1 GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMVVIGICTHLGCVPLPDTGDYNGCFCPCHGSHYDTAGRIRKGPAPLNLEIPPYKFLTKTSILVG 339
G ++ KWRGKPVFI+ R A I EA V + +LRD+ETD++R LKPE++VV+GICTHLGCVPL GD+NG FCPCHGSHYD +GRIRKGPAPLNLE+PPYKF +T IL+G
Sbjct: 141 GKTITVKWRGKPVFIRHRTPAEISGEANVSLAELRDEETDDDRTLKPEWLVVLGICTHLGCVPLSGAGDFNGWFCPCHGSHYDISGRIRKGPAPLNLEVPPYKFTEETKILIG 253
BLAST of mRNA_Ecto-sp13_S_contig10687.630.1 vs. uniprot
Match: A0A1Z5JD98_FISSO (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JD98_FISSO) HSP 1 Score: 172 bits (436), Expect = 5.060e-52 Identity = 71/113 (62.83%), Postives = 94/113 (83.19%), Query Frame = 1
Query: 1 GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMVVIGICTHLGCVPLPDTGDYNGCFCPCHGSHYDTAGRIRKGPAPLNLEIPPYKFLTKTSILVG 339
G +++ WRGKP++I+RR A IE+E+ V ++ LRDQE D +R +KPEF+VV+GIC HLGCVPLP+ GD+ G FCPCHGSHYD +GRIR GPAPLNLE+PPYKF++ T++L+G
Sbjct: 121 GKTIMVDWRGKPIYIRRRSAAEIEKESQVQLDHLRDQEADSDRTIKPEFLVVVGICPHLGCVPLPNAGDFGGFFCPCHGSHYDVSGRIRMGPAPLNLEVPPYKFISDTTVLIG 233
BLAST of mRNA_Ecto-sp13_S_contig10687.630.1 vs. uniprot
Match: A0A7S3L460_9STRA (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L460_9STRA) HSP 1 Score: 171 bits (434), Expect = 1.080e-51 Identity = 76/113 (67.26%), Postives = 91/113 (80.53%), Query Frame = 1
Query: 1 GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMVVIGICTHLGCVPLPDTGDYNGCFCPCHGSHYDTAGRIRKGPAPLNLEIPPYKFLTKTSILVG 339
G ++ KWRGKPVFI+RR A I RE V ME LRDQE D ER +KPE++VV+GIC HLGCVP+ + GDY G FCPCHGSHYDT+GRIRKGP+PLNLE+PPYKF+ + I+VG
Sbjct: 123 GKTITVKWRGKPVFIRRRTPAEISREEAVPMEVLRDQELDSERVIKPEYIVVLGICPHLGCVPVSNAGDYGGWFCPCHGSHYDTSGRIRKGPSPLNLEVPPYKFIDEKVIMVG 235
BLAST of mRNA_Ecto-sp13_S_contig10687.630.1 vs. uniprot
Match: B7FYB7_PHATC (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FYB7_PHATC) HSP 1 Score: 169 bits (428), Expect = 1.610e-51 Identity = 76/113 (67.26%), Postives = 91/113 (80.53%), Query Frame = 1
Query: 1 GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMVVIGICTHLGCVPLPDTGDYNGCFCPCHGSHYDTAGRIRKGPAPLNLEIPPYKFLTKTSILVG 339
G ++ KWRGKPVFI+RR A I EA V ME LRDQETD +R LKPEF+VV+GIC HLGCVP+ + GD+ G FCPCHGSHYD +GRIRKGP+PLNLE+PPYKF+ + IL+G
Sbjct: 67 GKTITAKWRGKPVFIRRRSAAEIATEAAVPMEYLRDQETDADRTLKPEFIVVLGICPHLGCVPVSNAGDFGGWFCPCHGSHYDKSGRIRKGPSPLNLEVPPYKFIDENVILMG 179
BLAST of mRNA_Ecto-sp13_S_contig10687.630.1 vs. uniprot
Match: W7TQL4_9STRA (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQL4_9STRA) HSP 1 Score: 169 bits (428), Expect = 7.780e-51 Identity = 71/113 (62.83%), Postives = 89/113 (78.76%), Query Frame = 1
Query: 1 GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMVVIGICTHLGCVPLPDTGDYNGCFCPCHGSHYDTAGRIRKGPAPLNLEIPPYKFLTKTSILVG 339
G + KWRGKP+FI+ R A I+RE V M +LRD E D R +PE+++++GICTHLGCVP+ + GDY+G FCPCHGSHYD +GRIRKGPAPLN+EIPPYKFLT T +L+G
Sbjct: 119 GQGITVKWRGKPIFIRHRTPAEIDRETAVNMNELRDAEPDAARAQQPEWLIIVGICTHLGCVPIANAGDYHGWFCPCHGSHYDVSGRIRKGPAPLNMEIPPYKFLTNTKVLIG 231
BLAST of mRNA_Ecto-sp13_S_contig10687.630.1 vs. uniprot
Match: A0A7S0CB90_9STRA (Cytochrome b-c1 complex subunit Rieske, mitochondrial n=2 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CB90_9STRA) HSP 1 Score: 167 bits (424), Expect = 2.410e-50 Identity = 74/113 (65.49%), Postives = 89/113 (78.76%), Query Frame = 1
Query: 1 GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMVVIGICTHLGCVPLPDTGDYNGCFCPCHGSHYDTAGRIRKGPAPLNLEIPPYKFLTKTSILVG 339
G ++ KWRGKP+F++ R + I E V M LRDQE D+ER KPE++VV+GICTHLGCVPL + GD+NG FCPCHGSHYDT+GRIRKGPAPLNLEIPPYKF+ IL+G
Sbjct: 110 GNTITVKWRGKPIFVRHRTASEISTEEAVPMGHLRDQEADDERYHKPEWLVVLGICTHLGCVPLGNAGDFNGWFCPCHGSHYDTSGRIRKGPAPLNLEIPPYKFIEDKKILIG 222 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10687.630.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10687.630.1 >prot_Ecto-sp13_S_contig10687.630.1 ID=prot_Ecto-sp13_S_contig10687.630.1|Name=mRNA_Ecto-sp13_S_contig10687.630.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=114bp GTSVIFKWRGKPVFIKRRDDAMIEREAGVLMEDLRDQETDEERCLKPEFMback to top mRNA from alignment at Ecto-sp13_S_contig10687:2918..4978- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10687.630.1 ID=mRNA_Ecto-sp13_S_contig10687.630.1|Name=mRNA_Ecto-sp13_S_contig10687.630.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2061bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10687:2918..4978- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10687:2918..4978- >mRNA_Ecto-sp13_S_contig10687.630.1 ID=mRNA_Ecto-sp13_S_contig10687.630.1|Name=mRNA_Ecto-sp13_S_contig10687.630.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=342bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10687:2918..4978- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |