prot_Ecto-sp13_S_contig10520.496.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10520.496.1
Unique Nameprot_Ecto-sp13_S_contig10520.496.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length78
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10520.496.1 vs. uniprot
Match: A0A6H5J7I8_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7I8_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 3.130e-40
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 0 
Query:    2 RAYATAFIVKSEKGYLLSAAHTFLKFKFEDSDGCGEGGDEGRNAPRRGRWFYHDGVTHENCIVLVGTYQSPSTTQWE 78
            RA+ATAFIVKSEKGYLLSAAHTFLKFKFE++DG GE GDEGRNAPRRGRW YHDGVTHENCIVLVGT+QSPSTT+WE
Sbjct: 1953 RAHATAFIVKSEKGYLLSAAHTFLKFKFEENDGGGEDGDEGRNAPRRGRWCYHDGVTHENCIVLVGTFQSPSTTRWE 2029
[Close]
BLAST of mRNA_Ecto-sp13_S_contig10520.496.1 vs. uniprot
Match: D7FWK1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK1_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 2.420e-38
Identity = 68/78 (87.18%), Postives = 73/78 (93.59%), Query Frame = 0 
Query:    1 MRAYATAFIVKSEKGYLLSAAHTFLKFKFEDSDGCGEGGDEGRNAPRRGRWFYHDGVTHENCIVLVGTYQSPSTTQWE 78
            MRA+ATAFIVKSEKGYLLSAAHTFLKFKFE++D   E GDEGRNAPRRGRW YH+GVTHENCIVLVGT+QSPSTTQWE
Sbjct: 1927 MRAHATAFIVKSEKGYLLSAAHTFLKFKFEENDVGVEDGDEGRNAPRRGRWCYHNGVTHENCIVLVGTFQSPSTTQWE 2004
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10520.496.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7I8_9PHAE3.130e-4089.61Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FWK1_ECTSI2.420e-3887.18LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10520contigEcto-sp13_S_contig10520:1725..3174 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10520.496.1mRNA_Ecto-sp13_S_contig10520.496.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10520 1725..3174 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10520.496.1 ID=prot_Ecto-sp13_S_contig10520.496.1|Name=mRNA_Ecto-sp13_S_contig10520.496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
MRAYATAFIVKSEKGYLLSAAHTFLKFKFEDSDGCGEGGDEGRNAPRRGR
WFYHDGVTHENCIVLVGTYQSPSTTQWE
back to top