mRNA_Ecto-sp13_S_contig10520.496.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10520.496.1
Unique NamemRNA_Ecto-sp13_S_contig10520.496.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10520.496.1 vs. uniprot
Match: A0A6H5J7I8_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7I8_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 3.130e-40
Identity = 69/77 (89.61%), Postives = 74/77 (96.10%), Query Frame = 1 
Query:    4 RAYATAFIVKSEKGYLLSAAHTFLKFKFEDSDGCGEGGDEGRNAPRRGRWFYHDGVTHENCIVLVGTYQSPSTTQWE 234
            RA+ATAFIVKSEKGYLLSAAHTFLKFKFE++DG GE GDEGRNAPRRGRW YHDGVTHENCIVLVGT+QSPSTT+WE
Sbjct: 1953 RAHATAFIVKSEKGYLLSAAHTFLKFKFEENDGGGEDGDEGRNAPRRGRWCYHDGVTHENCIVLVGTFQSPSTTRWE 2029
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BLAST of mRNA_Ecto-sp13_S_contig10520.496.1 vs. uniprot
Match: D7FWK1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWK1_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 2.420e-38
Identity = 68/78 (87.18%), Postives = 73/78 (93.59%), Query Frame = 1 
Query:    1 MRAYATAFIVKSEKGYLLSAAHTFLKFKFEDSDGCGEGGDEGRNAPRRGRWFYHDGVTHENCIVLVGTYQSPSTTQWE 234
            MRA+ATAFIVKSEKGYLLSAAHTFLKFKFE++D   E GDEGRNAPRRGRW YH+GVTHENCIVLVGT+QSPSTTQWE
Sbjct: 1927 MRAHATAFIVKSEKGYLLSAAHTFLKFKFEENDVGVEDGDEGRNAPRRGRWCYHNGVTHENCIVLVGTFQSPSTTQWE 2004
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10520.496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J7I8_9PHAE3.130e-4089.61Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FWK1_ECTSI2.420e-3887.18LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10520contigEcto-sp13_S_contig10520:1725..3174 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score145.2
Seed ortholog evalue1.3e-32
Seed eggNOG ortholog2880.D7FWK1
Preferred namePKD1
Model size234
KEGG koko:K04985,ko:K10348,ko:K10641
KEGG TC1.A.5.1.1
Hectar predicted targeting categoryother localisation
GOsGO:0000075,GO:0000076,GO:0000151,GO:0000278,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0007049,GO:0007093,GO:0007346,GO:0008150,GO:0009987,GO:0010389,GO:0010564,GO:0010948,GO:0010972,GO:0022402,GO:0031461,GO:0031462,GO:0031570,GO:0032991,GO:0033314,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0044774,GO:0044818,GO:0045786,GO:0045930,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902494,GO:1902749,GO:1902750,GO:1903047,GO:1990234
Exons2
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
EC2.3.2.27
Cds size234
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04040,ko04091,ko04121,ko04131,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462536.2339518-CDS-Ecto-sp13_S_contig10520:1724..17631681462536.2339518-CDS-Ecto-sp13_S_contig10520:1724..1763Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10520 1725..1763 -
1681462536.2447991-CDS-Ecto-sp13_S_contig10520:2979..31741681462536.2447991-CDS-Ecto-sp13_S_contig10520:2979..3174Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10520 2980..3174 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10520.496.1prot_Ecto-sp13_S_contig10520.496.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10520 1725..3174 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10520.496.1

>prot_Ecto-sp13_S_contig10520.496.1 ID=prot_Ecto-sp13_S_contig10520.496.1|Name=mRNA_Ecto-sp13_S_contig10520.496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
MRAYATAFIVKSEKGYLLSAAHTFLKFKFEDSDGCGEGGDEGRNAPRRGR
WFYHDGVTHENCIVLVGTYQSPSTTQWE
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mRNA from alignment at Ecto-sp13_S_contig10520:1725..3174-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10520.496.1 ID=mRNA_Ecto-sp13_S_contig10520.496.1|Name=mRNA_Ecto-sp13_S_contig10520.496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1450bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10520:1725..3174- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGGCTTACGCGACCGCCTTCATCGTCAAGTCCGAGAAGGGGTACCT
CCTTTCCGCCGCCCACACGTTCCTCAAGTTCAAGTTCGAAGACAGCGATG
GTTGTGGAGAGGGTGGCGACGAAGGGAGGAACGCCCCTCGTCGAGGGAGG
TGGTTCTACCATGATGGCGTCACCCACGAGAACTGCATTGTGCTGGTGAG
TTTTCCGCCAGGCTTGCCGGGCATGGCTAAAAGTTGTTGTCGTCATTGGT
GTTGGTGGAGTTGATGGTGTTGGTGATTCTTTTTTTTGTTGGTAGTTGTG
ATGTTCTCTGTTGATGTTGCTGTTGCTGCTGCGTTANNNNNNNNNNNNNN
NNNNNNNNNNNNNGTTGCTGCTGCGTTGTTCGTTGATGCGTTAATCAAGA
CGGGGTCGACCTTTTCTTTTTGTTCGCAAGTGTATGCGTTCCTCCTTCCT
TGCTATGCTTCATCATACTGTCGTCGACTTCAGAGTATACCGTAGATACC
ACAAGCGGGATGCAATGAAAGACAGCACACATCTCATACCGGTATGCATA
CCGTATCAGGAGTGACATCGTGCCGTGGAACGCTCCGTATCGCCCGCGGG
TGTTCCTCGAATCGGCGGGATCATGTTCATGAAAGGACCACGTTTTTGAA
AGCAACCCCGTTTCGGCGGAGTGACGGAAAAGGGAAATACCGCTCCCTAA
AGCAGACATCTAGACACAACTTCTCGAACATCAACCTACTCTTCTAGTGA
CAACAATAACTCATGTACACTACAAGGTACAATAATTTTTTCGGGTGTGT
TTTTTTCCCAACACGTACCGTGACACTATGTATGTCCGTGAATGGGCGTG
CCACTGAAAATGAAATCGATTCCGCTATTATAGCGTCTATCGGTCGATTC
ATACGAAAAATTGGAAATTTAGAAATTTGCCCCACTAATATGCGACGAGG
TTCCGACGCGCGCACGGGTGTGCAATCCAACGGTTTTGCGAGCTCGATTC
CTCGACAAGGAAGAAGATGCCAACGCCGAAACGAGTGGTTTTGGAACGAT
CTATCTCGTCGGGAGCCTCCTTTTCACGTGGCGTCCAGTTTTCGCAACAC
CCCTCTTGGTTGCCGAGCAATCGATCTTCGAGAATCCATCGCAAACTTGT
GCGTACGCCCTCACCCTTGCTGGTTGATTCTTCAGAATGGGTCGATTGCG
ATGTACCCGGTTGACCAATAAACAGGCGGCAGCAGTTACGACCGAGGAAC
AAGCGAGAACGCTTTGTAGTCCGCGGGATTCCCCCGACAGGCGTAGTTTT
TTTTTTTCACAGCAGTTTGTCTGTTGTTTCTTTCCGATCGCAACGCCTAT
GTAAGGTGGACCCACCTTTACTCACCCCCTTTGATCGTCATTTTCGTTGT
GCCTTGGTCAGGTCGGGACGTACCAGTCGCCGAGCACGACGCAGTGGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10520:1725..3174-

>mRNA_Ecto-sp13_S_contig10520.496.1 ID=mRNA_Ecto-sp13_S_contig10520.496.1|Name=mRNA_Ecto-sp13_S_contig10520.496.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10520:1725..3174- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGGCTTACGCGACCGCCTTCATCGTCAAGTCCGAGAAGGGGTACCT
CCTTTCCGCCGCCCACACGTTCCTCAAGTTCAAGTTCGAAGACAGCGATG
GTTGTGGAGAGGGTGGCGACGAAGGGAGGAACGCCCCTCGTCGAGGGAGG
TGGTTCTACCATGATGGCGTCACCCACGAGAACTGCATTGTGCTGGTCGG
GACGTACCAGTCGCCGAGCACGACGCAGTGGGAG
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