prot_Ecto-sp13_S_contig10402.389.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10402.389.1
Unique Nameprot_Ecto-sp13_S_contig10402.389.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length69
Homology
BLAST of mRNA_Ecto-sp13_S_contig10402.389.1 vs. uniprot
Match: D7G927_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G927_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 4.080e-38
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0
Query:    1 QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 68
            QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS
Sbjct:  131 QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 198          
BLAST of mRNA_Ecto-sp13_S_contig10402.389.1 vs. uniprot
Match: A0A836CN50_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN50_9STRA)

HSP 1 Score: 119 bits (297), Expect = 3.250e-32
Identity = 58/67 (86.57%), Postives = 65/67 (97.01%), Query Frame = 0
Query:    1 QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVV 67
            QDPAKADKITKIQRDLD+TT VLH+TI++VLERGV+LD+LVDRSD LSRQSKMFYKQA+KTNSCCVV
Sbjct:  131 QDPAKADKITKIQRDLDDTTNVLHKTIESVLERGVKLDDLVDRSDSLSRQSKMFYKQAKKTNSCCVV 197          
BLAST of mRNA_Ecto-sp13_S_contig10402.389.1 vs. uniprot
Match: B8CBU5_THAPS (Synaptobrevin n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBU5_THAPS)

HSP 1 Score: 118 bits (295), Expect = 4.360e-32
Identity = 56/68 (82.35%), Postives = 65/68 (95.59%), Query Frame = 0
Query:    1 QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 68
            QDPA ADK+TKIQ DLDETT++LH+TID+VLERGV+LD LV++SDDLSRQSKMFYKQA+KTNSCCVVS
Sbjct:  116 QDPASADKVTKIQNDLDETTQILHKTIDSVLERGVKLDSLVEKSDDLSRQSKMFYKQAKKTNSCCVVS 183          
BLAST of mRNA_Ecto-sp13_S_contig10402.389.1 vs. uniprot
Match: A0A6U1P542_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A6U1P542_CYCTE)

HSP 1 Score: 113 bits (283), Expect = 3.420e-31
Identity = 54/68 (79.41%), Postives = 64/68 (94.12%), Query Frame = 0
Query:    1 QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 68
            QDPA ADK+TKIQ+DLDETTE+LH+TID+VLERGV+LD LV+RS+DLS QSKMFYK A+KTN+CCVVS
Sbjct:   41 QDPAAADKVTKIQKDLDETTEILHKTIDSVLERGVKLDSLVERSNDLSTQSKMFYKSAKKTNACCVVS 108          
BLAST of mRNA_Ecto-sp13_S_contig10402.389.1 vs. uniprot
Match: W7TQ86_9STRA (Vamp-like protein ykt62 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQ86_9STRA)

HSP 1 Score: 115 bits (289), Expect = 5.390e-31
Identity = 56/68 (82.35%), Postives = 65/68 (95.59%), Query Frame = 0
Query:    1 QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 68
            QDPAKADKITKI+RDLDETT++LH+TID VLERGV+LDELV+RS+DLS QSK+FYKQARKTNSCC +S
Sbjct:  132 QDPAKADKITKIRRDLDETTDILHKTIDAVLERGVKLDELVERSNDLSSQSKLFYKQARKTNSCCSIS 199          
BLAST of mRNA_Ecto-sp13_S_contig10402.389.1 vs. uniprot
Match: A0A7R9W5E6_9STRA (Hypothetical protein n=4 Tax=Eupodiscales TaxID=33838 RepID=A0A7R9W5E6_9STRA)

HSP 1 Score: 116 bits (291), Expect = 5.610e-31
Identity = 54/68 (79.41%), Postives = 66/68 (97.06%), Query Frame = 0
Query:    1 QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 68
            QDPA ADK+TKIQ+DLDETT++LH+TID+VLERG +LD+LV+RSDDLS+QSKMFYKQA+KTNSCCV+S
Sbjct:  161 QDPATADKVTKIQKDLDETTQILHKTIDSVLERGSKLDDLVERSDDLSKQSKMFYKQAKKTNSCCVIS 228          
BLAST of mRNA_Ecto-sp13_S_contig10402.389.1 vs. uniprot
Match: A0A7S2LY35_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LY35_9STRA)

HSP 1 Score: 116 bits (291), Expect = 7.320e-31
Identity = 55/68 (80.88%), Postives = 65/68 (95.59%), Query Frame = 0
Query:    1 QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 68
            QDPA ADK+TKIQ DL+ETT++LH+TID+VLERGV+LD LV++SDDLSRQSKMFYKQA+KTNSCCVVS
Sbjct:  172 QDPASADKVTKIQNDLEETTQILHKTIDSVLERGVKLDSLVEKSDDLSRQSKMFYKQAKKTNSCCVVS 239          
BLAST of mRNA_Ecto-sp13_S_contig10402.389.1 vs. uniprot
Match: A0A448ZDP5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDP5_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.520e-30
Identity = 54/68 (79.41%), Postives = 64/68 (94.12%), Query Frame = 0
Query:    1 QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 68
            QDP+ ADKITKIQ DLDETT++LH+TID+VLERGV+LD LV+RS+DLS QSKMFYKQA+KTNSCCV+S
Sbjct:   93 QDPSAADKITKIQNDLDETTQILHKTIDSVLERGVKLDNLVERSNDLSAQSKMFYKQAKKTNSCCVIS 160          
BLAST of mRNA_Ecto-sp13_S_contig10402.389.1 vs. uniprot
Match: A0A6T5VLC8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A6T5VLC8_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.570e-30
Identity = 53/67 (79.10%), Postives = 66/67 (98.51%), Query Frame = 0
Query:    1 QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVV 67
            Q+PA+ADK++KIQ+DLDETTE+LH+TID+VLERGV+LD LV+RSDDLSRQSKMFYKQA+KTNSCC++
Sbjct:  133 QNPAEADKLSKIQKDLDETTEILHQTIDSVLERGVKLDALVERSDDLSRQSKMFYKQAKKTNSCCII 199          
BLAST of mRNA_Ecto-sp13_S_contig10402.389.1 vs. uniprot
Match: B7G495_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G495_PHATC)

HSP 1 Score: 114 bits (285), Expect = 2.220e-30
Identity = 53/68 (77.94%), Postives = 66/68 (97.06%), Query Frame = 0
Query:    1 QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 68
            Q+PA+ADK+TKIQ+DLDETT++LH+TID+VLERGV+LD LVD+S+DLS QSKMFYKQA+KTNSCCV+S
Sbjct:  133 QNPAEADKVTKIQKDLDETTQILHKTIDSVLERGVKLDSLVDKSNDLSAQSKMFYKQAKKTNSCCVIS 200          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10402.389.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G927_ECTSI4.080e-38100.00Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A836CN50_9STRA3.250e-3286.57Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
B8CBU5_THAPS4.360e-3282.35Synaptobrevin n=1 Tax=Thalassiosira pseudonana Tax... [more]
A0A6U1P542_CYCTE3.420e-3179.41Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
W7TQ86_9STRA5.390e-3182.35Vamp-like protein ykt62 n=2 Tax=Monodopsidaceae Ta... [more]
A0A7R9W5E6_9STRA5.610e-3179.41Hypothetical protein n=4 Tax=Eupodiscales TaxID=33... [more]
A0A7S2LY35_9STRA7.320e-3180.88Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A448ZDP5_9STRA1.520e-3079.41Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A6T5VLC8_9STRA1.570e-3079.10Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
B7G495_PHATC2.220e-3077.94Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001388SynaptobrevinPRINTSPR00219SYNAPTOBREVNcoord: 13..32
score: 29.19
coord: 33..52
score: 38.78
IPR001388SynaptobrevinPFAMPF00957Synaptobrevincoord: 6..62
e-value: 2.6E-16
score: 59.2
IPR001388SynaptobrevinPROSITEPS00417SYNAPTOBREVINcoord: 26..45
IPR001388SynaptobrevinPROSITEPS50892V_SNAREcoord: 8..68
score: 15.307
NoneNo IPR availableGENE3D1.20.5.110coord: 11..67
e-value: 6.0E-30
score: 104.8
NoneNo IPR availablePANTHERPTHR45806FAMILY NOT NAMEDcoord: 1..67
NoneNo IPR availablePANTHERPTHR45806:SF1SYNAPTOBREVIN HOMOLOG YKT6coord: 1..67
NoneNo IPR availableSUPERFAMILY58038SNARE fusion complexcoord: 2..66

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10402contigEcto-sp13_S_contig10402:5175..5797 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10402.389.1mRNA_Ecto-sp13_S_contig10402.389.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10402 5175..5797 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10402.389.1 ID=prot_Ecto-sp13_S_contig10402.389.1|Name=mRNA_Ecto-sp13_S_contig10402.389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQ
SKMFYKQARKTNSCCVVS*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001388Synaptobrevin