mRNA_Ecto-sp13_S_contig10402.389.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig10402.389.1
Unique NamemRNA_Ecto-sp13_S_contig10402.389.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig10402.389.1 vs. uniprot
Match: D7G927_ECTSI (Soluble NSF Attachment Protein (SNAP) Receptor (SNARE) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G927_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 4.080e-38
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 1 
Query:    1 QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 204
            QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS
Sbjct:  131 QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 198
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BLAST of mRNA_Ecto-sp13_S_contig10402.389.1 vs. uniprot
Match: A0A836CN50_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN50_9STRA)

HSP 1 Score: 119 bits (297), Expect = 3.250e-32
Identity = 58/67 (86.57%), Postives = 65/67 (97.01%), Query Frame = 1 
Query:    1 QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVV 201
            QDPAKADKITKIQRDLD+TT VLH+TI++VLERGV+LD+LVDRSD LSRQSKMFYKQA+KTNSCCVV
Sbjct:  131 QDPAKADKITKIQRDLDDTTNVLHKTIESVLERGVKLDDLVDRSDSLSRQSKMFYKQAKKTNSCCVV 197
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BLAST of mRNA_Ecto-sp13_S_contig10402.389.1 vs. uniprot
Match: B8CBU5_THAPS (Synaptobrevin n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBU5_THAPS)

HSP 1 Score: 118 bits (295), Expect = 4.360e-32
Identity = 56/68 (82.35%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:    1 QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 204
            QDPA ADK+TKIQ DLDETT++LH+TID+VLERGV+LD LV++SDDLSRQSKMFYKQA+KTNSCCVVS
Sbjct:  116 QDPASADKVTKIQNDLDETTQILHKTIDSVLERGVKLDSLVEKSDDLSRQSKMFYKQAKKTNSCCVVS 183
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BLAST of mRNA_Ecto-sp13_S_contig10402.389.1 vs. uniprot
Match: A0A6U1P542_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A6U1P542_CYCTE)

HSP 1 Score: 113 bits (283), Expect = 3.420e-31
Identity = 54/68 (79.41%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:    1 QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 204
            QDPA ADK+TKIQ+DLDETTE+LH+TID+VLERGV+LD LV+RS+DLS QSKMFYK A+KTN+CCVVS
Sbjct:   41 QDPAAADKVTKIQKDLDETTEILHKTIDSVLERGVKLDSLVERSNDLSTQSKMFYKSAKKTNACCVVS 108
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BLAST of mRNA_Ecto-sp13_S_contig10402.389.1 vs. uniprot
Match: W7TQ86_9STRA (Vamp-like protein ykt62 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQ86_9STRA)

HSP 1 Score: 115 bits (289), Expect = 5.390e-31
Identity = 56/68 (82.35%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:    1 QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 204
            QDPAKADKITKI+RDLDETT++LH+TID VLERGV+LDELV+RS+DLS QSK+FYKQARKTNSCC +S
Sbjct:  132 QDPAKADKITKIRRDLDETTDILHKTIDAVLERGVKLDELVERSNDLSSQSKLFYKQARKTNSCCSIS 199
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BLAST of mRNA_Ecto-sp13_S_contig10402.389.1 vs. uniprot
Match: A0A7R9W5E6_9STRA (Hypothetical protein n=4 Tax=Eupodiscales TaxID=33838 RepID=A0A7R9W5E6_9STRA)

HSP 1 Score: 116 bits (291), Expect = 5.610e-31
Identity = 54/68 (79.41%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:    1 QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 204
            QDPA ADK+TKIQ+DLDETT++LH+TID+VLERG +LD+LV+RSDDLS+QSKMFYKQA+KTNSCCV+S
Sbjct:  161 QDPATADKVTKIQKDLDETTQILHKTIDSVLERGSKLDDLVERSDDLSKQSKMFYKQAKKTNSCCVIS 228
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BLAST of mRNA_Ecto-sp13_S_contig10402.389.1 vs. uniprot
Match: A0A7S2LY35_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LY35_9STRA)

HSP 1 Score: 116 bits (291), Expect = 7.320e-31
Identity = 55/68 (80.88%), Postives = 65/68 (95.59%), Query Frame = 1 
Query:    1 QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 204
            QDPA ADK+TKIQ DL+ETT++LH+TID+VLERGV+LD LV++SDDLSRQSKMFYKQA+KTNSCCVVS
Sbjct:  172 QDPASADKVTKIQNDLEETTQILHKTIDSVLERGVKLDSLVEKSDDLSRQSKMFYKQAKKTNSCCVVS 239
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BLAST of mRNA_Ecto-sp13_S_contig10402.389.1 vs. uniprot
Match: A0A448ZDP5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZDP5_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.520e-30
Identity = 54/68 (79.41%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:    1 QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 204
            QDP+ ADKITKIQ DLDETT++LH+TID+VLERGV+LD LV+RS+DLS QSKMFYKQA+KTNSCCV+S
Sbjct:   93 QDPSAADKITKIQNDLDETTQILHKTIDSVLERGVKLDNLVERSNDLSAQSKMFYKQAKKTNSCCVIS 160
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BLAST of mRNA_Ecto-sp13_S_contig10402.389.1 vs. uniprot
Match: A0A6T5VLC8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A6T5VLC8_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.570e-30
Identity = 53/67 (79.10%), Postives = 66/67 (98.51%), Query Frame = 1 
Query:    1 QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVV 201
            Q+PA+ADK++KIQ+DLDETTE+LH+TID+VLERGV+LD LV+RSDDLSRQSKMFYKQA+KTNSCC++
Sbjct:  133 QNPAEADKLSKIQKDLDETTEILHQTIDSVLERGVKLDALVERSDDLSRQSKMFYKQAKKTNSCCII 199
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BLAST of mRNA_Ecto-sp13_S_contig10402.389.1 vs. uniprot
Match: B7G495_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G495_PHATC)

HSP 1 Score: 114 bits (285), Expect = 2.220e-30
Identity = 53/68 (77.94%), Postives = 66/68 (97.06%), Query Frame = 1 
Query:    1 QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQSKMFYKQARKTNSCCVVS 204
            Q+PA+ADK+TKIQ+DLDETT++LH+TID+VLERGV+LD LVD+S+DLS QSKMFYKQA+KTNSCCV+S
Sbjct:  133 QNPAEADKVTKIQKDLDETTQILHKTIDSVLERGVKLDSLVDKSNDLSAQSKMFYKQAKKTNSCCVIS 200
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10402.389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G927_ECTSI4.080e-38100.00Soluble NSF Attachment Protein (SNAP) Receptor (SN... [more]
A0A836CN50_9STRA3.250e-3286.57Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
B8CBU5_THAPS4.360e-3282.35Synaptobrevin n=1 Tax=Thalassiosira pseudonana Tax... [more]
A0A6U1P542_CYCTE3.420e-3179.41Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
W7TQ86_9STRA5.390e-3182.35Vamp-like protein ykt62 n=2 Tax=Monodopsidaceae Ta... [more]
A0A7R9W5E6_9STRA5.610e-3179.41Hypothetical protein n=4 Tax=Eupodiscales TaxID=33... [more]
A0A7S2LY35_9STRA7.320e-3180.88Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A448ZDP5_9STRA1.520e-3079.41Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A6T5VLC8_9STRA1.570e-3079.10Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
B7G495_PHATC2.220e-3077.94Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10402contigEcto-sp13_S_contig10402:5175..5797 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score135.6
Seed ortholog evalue8.9e-30
Seed eggNOG ortholog2880.D7G927
Preferred nameYKT6
Model size207
KEGG rclassRC00438,RC00439,RC00603,RC00604
KEGG koko:K01623,ko:K08516,ko:K18999
KEGG ReactionR01068,R01070,R01829,R02568
KEGG Pathwayko00010,ko00030,ko00051,ko00680,ko00710,ko01100,ko01110,ko01120,ko01130,ko01200,ko01230,ko04130,ko04138,map00010,map00030,map00051,map00680,map00710,map01100,map01110,map01120,map01130,map01200,map01230,map04130,map04138
KEGG ModuleM00001,M00003,M00165,M00167
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000149,GO:0000322,GO:0000323,GO:0000324,GO:0003674,GO:0003824,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005768,GO:0005773,GO:0005783,GO:0005793,GO:0005794,GO:0005829,GO:0005886,GO:0005887,GO:0006810,GO:0006886,GO:0006887,GO:0006888,GO:0006890,GO:0006891,GO:0006903,GO:0006904,GO:0006906,GO:0006996,GO:0007033,GO:0008104,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016409,GO:0016417,GO:0016482,GO:0016740,GO:0016746,GO:0016747,GO:0019706,GO:0019707,GO:0022406,GO:0030133,GO:0030425,GO:0030659,GO:0031090,GO:0031201,GO:0031224,GO:0031226,GO:0031410,GO:0031982,GO:0031984,GO:0032940,GO:0032991,GO:0033036,GO:0033116,GO:0034613,GO:0036477,GO:0042144,GO:0042147,GO:0042886,GO:0042995,GO:0043005,GO:0043025,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048278,GO:0048284,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090174,GO:0097440,GO:0097441,GO:0097447,GO:0097458,GO:0097576,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0120025,GO:0120038,GO:0140029,GO:0140056,GO:0140096
Exons2
EggNOG free text desc.SNAP receptor activity
EggNOG OGsCOG5143@1,KOG0861@2759
EC3.1.3.16,4.1.2.13
Cds size207
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03021,ko03036,ko04131,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462528.9986856-CDS-Ecto-sp13_S_contig10402:5174..53121681462528.9986856-CDS-Ecto-sp13_S_contig10402:5174..5312Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10402 5175..5312 -
1681462529.0103161-CDS-Ecto-sp13_S_contig10402:5728..57971681462529.0103161-CDS-Ecto-sp13_S_contig10402:5728..5797Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig10402 5729..5797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10402.389.1prot_Ecto-sp13_S_contig10402.389.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig10402 5175..5797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig10402.389.1

>prot_Ecto-sp13_S_contig10402.389.1 ID=prot_Ecto-sp13_S_contig10402.389.1|Name=mRNA_Ecto-sp13_S_contig10402.389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
QDPAKADKITKIQRDLDETTEVLHRTIDNVLERGVRLDELVDRSDDLSRQ
SKMFYKQARKTNSCCVVS*
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mRNA from alignment at Ecto-sp13_S_contig10402:5175..5797-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig10402.389.1 ID=mRNA_Ecto-sp13_S_contig10402.389.1|Name=mRNA_Ecto-sp13_S_contig10402.389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=623bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10402:5175..5797- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGACCCGGCGAAGGCGGACAAGATCACCAAGATTCAGCGCGATTTGGA
CGAGACGACCGAAGTGCTGGTGAGACGATGAGCTTGCCCTCATGGCCACT
ACATACTGTCTCGCTCCCCCCACAATGGCGTTCGTCGTGTCTAGGGTCAA
CACCTGCGTGTTGCGGCGCAACGCCGTTTTTTGTCACAGAACACCTGTTT
CGATTGGAAGCGTTTATTGCATGGTGGTCTTCACTCCCGGTTCTAGCCAC
AGAGGGATAAATGAGATAATTCCCACGGATTTTGGTAACCACTGAGGAAA
GAGCGTGGCCGGACCGCACAGGTTCCCTGGTTGACACGGAACTTGCCCAT
AGCTTTGTTCCCCCCTGGTGGAAAGTGGAAATGGAATTGAAAGTGGATAG
ACCCACAACGAAGACGCCCCCCGCAACCAAAGTTCACGCTCGCGTTCGTG
GTCGCCGTAACAATATTGCCGACTGTGAACGGCAGCACCGAACCATCGAC
AACGTGTTGGAGAGAGGGGTAAGGCTGGATGAGCTCGTGGACCGATCCGA
CGACTTGAGCAGACAATCCAAGATGTTTTACAAGCAAGCGAGGAAAACGA
ACAGCTGCTGCGTGGTGAGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10402:5175..5797-

>mRNA_Ecto-sp13_S_contig10402.389.1 ID=mRNA_Ecto-sp13_S_contig10402.389.1|Name=mRNA_Ecto-sp13_S_contig10402.389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10402:5175..5797- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGACCCGGCGAAGGCGGACAAGATCACCAAGATTCAGCGCGATTTGGA
CGAGACGACCGAAGTGCTGCACCGAACCATCGACAACGTGTTGGAGAGAG
GGGTAAGGCTGGATGAGCTCGTGGACCGATCCGACGACTTGAGCAGACAA
TCCAAGATGTTTTACAAGCAAGCGAGGAAAACGAACAGCTGCTGCGTGGT
GAGCTGA
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