prot_Ecto-sp13_S_contig10237.264.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig10237.264.1
Unique Nameprot_Ecto-sp13_S_contig10237.264.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length187
Homology
BLAST of mRNA_Ecto-sp13_S_contig10237.264.1 vs. uniprot
Match: D7G8W8_ECTSI (Cleavage and polyadenylation specificity factor CG10110-PA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W8_ECTSI)

HSP 1 Score: 376 bits (966), Expect = 1.060e-117
Identity = 184/187 (98.40%), Postives = 187/187 (100.00%), Query Frame = 0
Query:    1 GGSGGNLAVSKPFTIDLEEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYARATVDPALLECPLRGGDSDWGWTSFRRSHPEREMIDLSSYDVCIELDVVRCAFLTPTSML 187
            GG+GGNLAVSKPFTIDLEEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYARATVDPALLECPLRGGDSDWGWTSFRRSHPERE++DLSSYDVCIELDVVRCAFLTPTSML
Sbjct:  281 GGAGGNLAVSKPFTIDLEEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYARATVDPALLECPLRGGDSDWGWTSFRRSHPEREVVDLSSYDVCIELDVVRCAFLTPTSML 467          
BLAST of mRNA_Ecto-sp13_S_contig10237.264.1 vs. uniprot
Match: UPI000A2A51A4 (cleavage and polyadenylation specificity factor subunit 1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A51A4)

HSP 1 Score: 105 bits (263), Expect = 4.430e-23
Identity = 52/102 (50.98%), Postives = 74/102 (72.55%), Query Frame = 0
Query:   14 TIDLEEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQS 115
            T DL+E   T  I    FL G++EP L +LYEPI+T AGRLA +R TC L  +S+N+++   PVIWQ+ +LP+DS+ ++ VP PIGG+ V STNA++++NQS
Sbjct:  195 TKDLDEK--TCNIVDLQFLHGYYEPTLLILYEPIKTWAGRLAMRRDTCALVAVSLNMSERVHPVIWQLSSLPYDSYSVLAVPKPIGGVLVFSTNALLYLNQS 294          
BLAST of mRNA_Ecto-sp13_S_contig10237.264.1 vs. uniprot
Match: A0A1Y1Y6W0_9FUNG (Uncharacterized protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y6W0_9FUNG)

HSP 1 Score: 105 bits (262), Expect = 6.050e-23
Identity = 47/97 (48.45%), Postives = 74/97 (76.29%), Query Frame = 0
Query:   31 FLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYA 127
            FLE ++EP LA+LYEP+QT    L++++ TC LA++S++LT+   PVI+ +++LP+D   L+PVP PIGG+ ++S NA++HV+QS     +AVNG+A
Sbjct:  205 FLEDYYEPTLAILYEPVQTNTVLLSTRKDTCALAVVSLDLTKKLYPVIYSIDSLPYDCIKLIPVPKPIGGILIVSANALIHVDQSSPGQGIAVNGHA 301          
BLAST of mRNA_Ecto-sp13_S_contig10237.264.1 vs. uniprot
Match: A0A0L0HAP2_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HAP2_SPIPD)

HSP 1 Score: 104 bits (260), Expect = 1.140e-22
Identity = 50/98 (51.02%), Postives = 75/98 (76.53%), Query Frame = 0
Query:   30 AFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSIL-AVNGY 126
            AFL GF EP LA+LYEPIQT  GRLA+++ T  L ++S+++TQ   PV+++V++LP+++  L+PVP P+GGL V+S NA++HV+Q+ V  +  AVN Y
Sbjct:  240 AFLYGFFEPTLAILYEPIQTWTGRLAARKDTKSLIVVSLDITQRSYPVLFKVDHLPYNATSLIPVPPPVGGLVVLSPNALIHVDQTSVPGVACAVNSY 337          
BLAST of mRNA_Ecto-sp13_S_contig10237.264.1 vs. uniprot
Match: A0A397HFG4_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397HFG4_9GLOM)

HSP 1 Score: 104 bits (259), Expect = 1.540e-22
Identity = 48/105 (45.71%), Postives = 72/105 (68.57%), Query Frame = 0
Query:   31 FLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYARATVDPAL 135
            FL  F+EP LA+L+EP QT  G+L S + +C L ++S+ ++Q   P+I  ++NLPH    L+ +P P+GG+ +IS NA++HVNQS     +AVNGYA +T D +L
Sbjct:  237 FLHDFYEPTLAILFEPCQTWPGKLNSTKDSCSLVVVSLLISQKAYPIIQSMDNLPHSCVKLISIPKPVGGILIISANAIIHVNQSSKGIGVAVNGYASSTTDFSL 341          
BLAST of mRNA_Ecto-sp13_S_contig10237.264.1 vs. uniprot
Match: A0A1V9XRN3_9ACAR (Cleavage and polyadenylation specificity factor subunit 1-like n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9XRN3_9ACAR)

HSP 1 Score: 103 bits (258), Expect = 2.090e-22
Identity = 58/164 (35.37%), Postives = 91/164 (55.49%), Query Frame = 0
Query:   18 EEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYARATVDPALLECPLRGGDSDWGWTSFRRSHPEREMIDLSSYDVCIELDVVRCAFL 181
            EE G+   +   AFL+G++EP L LLYEP+ T +GR+A ++ TC +  LS+N+ Q   P +W   NLP++S+ ++PVP PIGG+ +IS NA++++NQS     +++N +                       T    + P ++      +DVCI LD  RC FL
Sbjct:  239 EEKGVNN-VHDMAFLDGYYEPTLLLLYEPVATWSGRVAIRQDTCAIMALSLNVYQRVHPPVWSYCNLPYNSFKVLPVPKPIGGVLIISVNALLYLNQSVPPYGVSLNSF-----------------------TDVSTAFPLKQQ-----HDVCISLDSCRCEFL 373          
BLAST of mRNA_Ecto-sp13_S_contig10237.264.1 vs. uniprot
Match: A0A7M7KCR8_VARDE (Uncharacterized protein n=3 Tax=Varroa TaxID=62624 RepID=A0A7M7KCR8_VARDE)

HSP 1 Score: 100 bits (249), Expect = 3.350e-21
Identity = 48/122 (39.34%), Postives = 79/122 (64.75%), Query Frame = 0
Query:   18 EEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYARATVDPALLECP 139
            EE G+   +   AFL+G++EP L LLYEP+ T AGR+A ++ TC +  LS+N+ Q   P +W   NLP++S+ ++PVP PIGG+ ++S NA++++NQS     +++N +   +    L + P
Sbjct:  234 EEKGVNN-VHDMAFLDGYYEPTLLLLYEPVATWAGRVAIRQDTCAIMALSLNVYQRVHPPVWSYCNLPYNSFKVLPVPKPIGGVLIVSVNALLYLNQSVPPYGVSLNSFTEVSTAFPLKQQP 354          
BLAST of mRNA_Ecto-sp13_S_contig10237.264.1 vs. uniprot
Match: A0A197K6H8_9FUNG (Uncharacterized protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197K6H8_9FUNG)

HSP 1 Score: 99.0 bits (245), Expect = 1.150e-20
Identity = 47/111 (42.34%), Postives = 72/111 (64.86%), Query Frame = 0
Query:   31 FLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYARATVDPALLECPLR 141
            FL  F EP LA+LY P QT  GRLA ++ TC L ++S+N+T    P+I+ +++LP+D   ++ +P P+GGL V+S NA++H++Q      +AVNGYA     P +   PL+
Sbjct:  200 FLYDFFEPTLAILYSPQQTWTGRLAVRKDTCSLVVVSLNITHKVYPIIYSIDHLPYDCTKIIAMPKPVGGLLVVSANALIHLDQGSSGMGVAVNGYA-----PLVTNFPLQ 305          
BLAST of mRNA_Ecto-sp13_S_contig10237.264.1 vs. uniprot
Match: A0A0K9RDT4_SPIOL (Uncharacterized protein n=8 Tax=Chenopodiaceae TaxID=1804623 RepID=A0A0K9RDT4_SPIOL)

HSP 1 Score: 98.6 bits (244), Expect = 1.560e-20
Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = 0
Query:    2 GSGGNLAVSKPFTIDLEEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYA 127
            G   +  V   + I+L +  I   +K   F+ G+ EP L +L+E   T AGR + K  TC L+ LSIN T  + P+IW   NLPHD++ L+ VPSPIGG+ VISTNAV + +QS +   LAVN +A
Sbjct:  220 GGAASARVESSYIINLRDLDIK-HVKDFVFVHGYIEPVLVILHERELTWAGRTSWKHHTCMLSALSINTTMKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVISTNAVYYHSQS-MSCALAVNTFA 343          
BLAST of mRNA_Ecto-sp13_S_contig10237.264.1 vs. uniprot
Match: A0A5N5F6T2_9ROSA (Cleavage and polyadenylation specificity factor subunit 1 n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5F6T2_9ROSA)

HSP 1 Score: 98.6 bits (244), Expect = 1.560e-20
Identity = 53/128 (41.41%), Postives = 81/128 (63.28%), Query Frame = 0
Query:    2 GSGGNLA--VSKPFTIDLEEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYA 127
            GSGG ++  V   + ++L +  +   +K   F+ G+ EP + +L+E   T AGR++ K  TC ++ LSI+ T  + P+IW   NLPHDS+ L+ VPSPIGG+ VIS N++ + +QS     LA+NGYA
Sbjct:  223 GSGGAISARVDSSYIVNLGDMDMK-HVKDFTFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAVNLPHDSYKLLAVPSPIGGVLVISANSIHYHSQSASSCALALNGYA 349          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10237.264.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8W8_ECTSI1.060e-11798.40Cleavage and polyadenylation specificity factor CG... [more]
UPI000A2A51A44.430e-2350.98cleavage and polyadenylation specificity factor su... [more]
A0A1Y1Y6W0_9FUNG6.050e-2348.45Uncharacterized protein n=1 Tax=Basidiobolus meris... [more]
A0A0L0HAP2_SPIPD1.140e-2251.02Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A397HFG4_9GLOM1.540e-2245.71Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A1V9XRN3_9ACAR2.090e-2235.37Cleavage and polyadenylation specificity factor su... [more]
A0A7M7KCR8_VARDE3.350e-2139.34Uncharacterized protein n=3 Tax=Varroa TaxID=62624... [more]
A0A197K6H8_9FUNG1.150e-2042.34Uncharacterized protein n=1 Tax=Linnemannia elonga... [more]
A0A0K9RDT4_SPIOL1.560e-2044.44Uncharacterized protein n=8 Tax=Chenopodiaceae Tax... [more]
A0A5N5F6T2_9ROSA1.560e-2041.41Cleavage and polyadenylation specificity factor su... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 3..136
e-value: 2.3E-14
score: 54.8
NoneNo IPR availablePANTHERPTHR10644:SF2CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1coord: 26..131
NoneNo IPR availablePANTHERPTHR10644DNA REPAIR/RNA PROCESSING CPSF FAMILYcoord: 26..131

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig10237contigEcto-sp13_S_contig10237:2925..5054 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig10237.264.1mRNA_Ecto-sp13_S_contig10237.264.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig10237 2925..5054 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig10237.264.1 ID=prot_Ecto-sp13_S_contig10237.264.1|Name=mRNA_Ecto-sp13_S_contig10237.264.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=187bp
GGSGGNLAVSKPFTIDLEEAGITGFIKAAAFLEGFHEPALALLYEPIQTC
AGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGG
LQVISTNAVMHVNQSEVRSILAVNGYARATVDPALLECPLRGGDSDWGWT
SFRRSHPEREMIDLSSYDVCIELDVVRCAFLTPTSML
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf