mRNA_Ecto-sp13_S_contig10237.264.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig10237.264.1 vs. uniprot
Match: D7G8W8_ECTSI (Cleavage and polyadenylation specificity factor CG10110-PA n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8W8_ECTSI) HSP 1 Score: 376 bits (966), Expect = 1.060e-117 Identity = 184/187 (98.40%), Postives = 187/187 (100.00%), Query Frame = 1
Query: 1 GGSGGNLAVSKPFTIDLEEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYARATVDPALLECPLRGGDSDWGWTSFRRSHPEREMIDLSSYDVCIELDVVRCAFLTPTSML 561
GG+GGNLAVSKPFTIDLEEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYARATVDPALLECPLRGGDSDWGWTSFRRSHPERE++DLSSYDVCIELDVVRCAFLTPTSML
Sbjct: 281 GGAGGNLAVSKPFTIDLEEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYARATVDPALLECPLRGGDSDWGWTSFRRSHPEREVVDLSSYDVCIELDVVRCAFLTPTSML 467
BLAST of mRNA_Ecto-sp13_S_contig10237.264.1 vs. uniprot
Match: UPI000A2A51A4 (cleavage and polyadenylation specificity factor subunit 1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A51A4) HSP 1 Score: 105 bits (263), Expect = 4.430e-23 Identity = 52/102 (50.98%), Postives = 74/102 (72.55%), Query Frame = 1
Query: 40 TIDLEEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQS 345
T DL+E T I FL G++EP L +LYEPI+T AGRLA +R TC L +S+N+++ PVIWQ+ +LP+DS+ ++ VP PIGG+ V STNA++++NQS
Sbjct: 195 TKDLDEK--TCNIVDLQFLHGYYEPTLLILYEPIKTWAGRLAMRRDTCALVAVSLNMSERVHPVIWQLSSLPYDSYSVLAVPKPIGGVLVFSTNALLYLNQS 294
BLAST of mRNA_Ecto-sp13_S_contig10237.264.1 vs. uniprot
Match: A0A1Y1Y6W0_9FUNG (Uncharacterized protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y6W0_9FUNG) HSP 1 Score: 105 bits (262), Expect = 6.050e-23 Identity = 47/97 (48.45%), Postives = 74/97 (76.29%), Query Frame = 1
Query: 91 FLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYA 381
FLE ++EP LA+LYEP+QT L++++ TC LA++S++LT+ PVI+ +++LP+D L+PVP PIGG+ ++S NA++HV+QS +AVNG+A
Sbjct: 205 FLEDYYEPTLAILYEPVQTNTVLLSTRKDTCALAVVSLDLTKKLYPVIYSIDSLPYDCIKLIPVPKPIGGILIVSANALIHVDQSSPGQGIAVNGHA 301
BLAST of mRNA_Ecto-sp13_S_contig10237.264.1 vs. uniprot
Match: A0A0L0HAP2_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HAP2_SPIPD) HSP 1 Score: 104 bits (260), Expect = 1.140e-22 Identity = 50/98 (51.02%), Postives = 75/98 (76.53%), Query Frame = 1
Query: 88 AFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSIL-AVNGY 378
AFL GF EP LA+LYEPIQT GRLA+++ T L ++S+++TQ PV+++V++LP+++ L+PVP P+GGL V+S NA++HV+Q+ V + AVN Y
Sbjct: 240 AFLYGFFEPTLAILYEPIQTWTGRLAARKDTKSLIVVSLDITQRSYPVLFKVDHLPYNATSLIPVPPPVGGLVVLSPNALIHVDQTSVPGVACAVNSY 337
BLAST of mRNA_Ecto-sp13_S_contig10237.264.1 vs. uniprot
Match: A0A397HFG4_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397HFG4_9GLOM) HSP 1 Score: 104 bits (259), Expect = 1.540e-22 Identity = 48/105 (45.71%), Postives = 72/105 (68.57%), Query Frame = 1
Query: 91 FLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYARATVDPAL 405
FL F+EP LA+L+EP QT G+L S + +C L ++S+ ++Q P+I ++NLPH L+ +P P+GG+ +IS NA++HVNQS +AVNGYA +T D +L
Sbjct: 237 FLHDFYEPTLAILFEPCQTWPGKLNSTKDSCSLVVVSLLISQKAYPIIQSMDNLPHSCVKLISIPKPVGGILIISANAIIHVNQSSKGIGVAVNGYASSTTDFSL 341
BLAST of mRNA_Ecto-sp13_S_contig10237.264.1 vs. uniprot
Match: A0A1V9XRN3_9ACAR (Cleavage and polyadenylation specificity factor subunit 1-like n=1 Tax=Tropilaelaps mercedesae TaxID=418985 RepID=A0A1V9XRN3_9ACAR) HSP 1 Score: 103 bits (258), Expect = 2.090e-22 Identity = 58/164 (35.37%), Postives = 91/164 (55.49%), Query Frame = 1
Query: 52 EEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYARATVDPALLECPLRGGDSDWGWTSFRRSHPEREMIDLSSYDVCIELDVVRCAFL 543
EE G+ + AFL+G++EP L LLYEP+ T +GR+A ++ TC + LS+N+ Q P +W NLP++S+ ++PVP PIGG+ +IS NA++++NQS +++N + T + P ++ +DVCI LD RC FL
Sbjct: 239 EEKGVNN-VHDMAFLDGYYEPTLLLLYEPVATWSGRVAIRQDTCAIMALSLNVYQRVHPPVWSYCNLPYNSFKVLPVPKPIGGVLIISVNALLYLNQSVPPYGVSLNSF-----------------------TDVSTAFPLKQQ-----HDVCISLDSCRCEFL 373
BLAST of mRNA_Ecto-sp13_S_contig10237.264.1 vs. uniprot
Match: A0A7M7KCR8_VARDE (Uncharacterized protein n=3 Tax=Varroa TaxID=62624 RepID=A0A7M7KCR8_VARDE) HSP 1 Score: 100 bits (249), Expect = 3.350e-21 Identity = 48/122 (39.34%), Postives = 79/122 (64.75%), Query Frame = 1
Query: 52 EEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYARATVDPALLECP 417
EE G+ + AFL+G++EP L LLYEP+ T AGR+A ++ TC + LS+N+ Q P +W NLP++S+ ++PVP PIGG+ ++S NA++++NQS +++N + + L + P
Sbjct: 234 EEKGVNN-VHDMAFLDGYYEPTLLLLYEPVATWAGRVAIRQDTCAIMALSLNVYQRVHPPVWSYCNLPYNSFKVLPVPKPIGGVLIVSVNALLYLNQSVPPYGVSLNSFTEVSTAFPLKQQP 354
BLAST of mRNA_Ecto-sp13_S_contig10237.264.1 vs. uniprot
Match: A0A197K6H8_9FUNG (Uncharacterized protein n=1 Tax=Linnemannia elongata AG-77 TaxID=1314771 RepID=A0A197K6H8_9FUNG) HSP 1 Score: 99.0 bits (245), Expect = 1.150e-20 Identity = 47/111 (42.34%), Postives = 72/111 (64.86%), Query Frame = 1
Query: 91 FLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYARATVDPALLECPLR 423
FL F EP LA+LY P QT GRLA ++ TC L ++S+N+T P+I+ +++LP+D ++ +P P+GGL V+S NA++H++Q +AVNGYA P + PL+
Sbjct: 200 FLYDFFEPTLAILYSPQQTWTGRLAVRKDTCSLVVVSLNITHKVYPIIYSIDHLPYDCTKIIAMPKPVGGLLVVSANALIHLDQGSSGMGVAVNGYA-----PLVTNFPLQ 305
BLAST of mRNA_Ecto-sp13_S_contig10237.264.1 vs. uniprot
Match: A0A0K9RDT4_SPIOL (Uncharacterized protein n=8 Tax=Chenopodiaceae TaxID=1804623 RepID=A0A0K9RDT4_SPIOL) HSP 1 Score: 98.6 bits (244), Expect = 1.560e-20 Identity = 56/126 (44.44%), Postives = 77/126 (61.11%), Query Frame = 1
Query: 4 GSGGNLAVSKPFTIDLEEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYA 381
G + V + I+L + I +K F+ G+ EP L +L+E T AGR + K TC L+ LSIN T + P+IW NLPHD++ L+ VPSPIGG+ VISTNAV + +QS + LAVN +A
Sbjct: 220 GGAASARVESSYIINLRDLDIK-HVKDFVFVHGYIEPVLVILHERELTWAGRTSWKHHTCMLSALSINTTMKQHPLIWSAMNLPHDAYKLLAVPSPIGGVLVISTNAVYYHSQS-MSCALAVNTFA 343
BLAST of mRNA_Ecto-sp13_S_contig10237.264.1 vs. uniprot
Match: A0A5N5F6T2_9ROSA (Cleavage and polyadenylation specificity factor subunit 1 n=1 Tax=Pyrus ussuriensis x Pyrus communis TaxID=2448454 RepID=A0A5N5F6T2_9ROSA) HSP 1 Score: 98.6 bits (244), Expect = 1.560e-20 Identity = 53/128 (41.41%), Postives = 81/128 (63.28%), Query Frame = 1
Query: 4 GSGGNLA--VSKPFTIDLEEAGITGFIKAAAFLEGFHEPALALLYEPIQTCAGRLASKRSTCRLALLSINLTQGRAPVIWQVENLPHDSWDLVPVPSPIGGLQVISTNAVMHVNQSEVRSILAVNGYA 381
GSGG ++ V + ++L + + +K F+ G+ EP + +L+E T AGR++ K TC ++ LSI+ T + P+IW NLPHDS+ L+ VPSPIGG+ VIS N++ + +QS LA+NGYA
Sbjct: 223 GSGGAISARVDSSYIVNLGDMDMK-HVKDFTFVHGYIEPVMVILHERELTWAGRVSWKHHTCMISALSISTTLKQHPLIWSAVNLPHDSYKLLAVPSPIGGVLVISANSIHYHSQSASSCALALNGYA 349 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig10237.264.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig10237.264.1 >prot_Ecto-sp13_S_contig10237.264.1 ID=prot_Ecto-sp13_S_contig10237.264.1|Name=mRNA_Ecto-sp13_S_contig10237.264.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=187bp GGSGGNLAVSKPFTIDLEEAGITGFIKAAAFLEGFHEPALALLYEPIQTCback to top mRNA from alignment at Ecto-sp13_S_contig10237:2925..5054+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig10237.264.1 ID=mRNA_Ecto-sp13_S_contig10237.264.1|Name=mRNA_Ecto-sp13_S_contig10237.264.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2130bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10237:2925..5054+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig10237:2925..5054+ >mRNA_Ecto-sp13_S_contig10237.264.1 ID=mRNA_Ecto-sp13_S_contig10237.264.1|Name=mRNA_Ecto-sp13_S_contig10237.264.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=561bp|location=Sequence derived from alignment at Ecto-sp13_S_contig10237:2925..5054+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |