prot_Ecto-sp13_S_contig100607.83.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig100607.83.1
Unique Name	prot_Ecto-sp13_S_contig100607.83.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	63

Homology

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BLAST of mRNA_Ecto-sp13_S_contig100607.83.1 vs. uniprot
Match: A0A6H5JI56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI56_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 8.020e-23
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 0

Query:    9 ILKMNTRAKEAEGYLRRALRIFSEKLGATDTKASTAMYDLGRCLSLAGQTR 59
            ILKMNTRAKEAEGYLRRALRIFSEKLGATDT ASTAMYDLGRCLSLAGQTR
Sbjct:  878 ILKMNTRAKEAEGYLRRALRIFSEKLGATDTTASTAMYDLGRCLSLAGQTR 928

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig100607.83.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig100607.83.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1

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POSITION

0


Match Name	E-value	Identity	Description
A0A6H5JI56_9PHAE	8.020e-23	98.04	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29

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POSITION

0


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF13424	TPR_12	coord: 2..63 e-value: 1.4E-10 score: 41.3
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10		coord: 1..63 e-value: 5.4E-10 score: 40.8
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 2..63

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig100607	contig	Ecto-sp13_S_contig100607:321..509 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig100607.83.1	mRNA_Ecto-sp13_S_contig100607.83.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig100607 321..509 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig100607.83.1 ID=prot_Ecto-sp13_S_contig100607.83.1|Name=mRNA_Ecto-sp13_S_contig100607.83.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
TLHSLGLCILKMNTRAKEAEGYLRRALRIFSEKLGATDTKASTAMYDLGR
CLSLAGQTREAEE

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf