mRNA_Ecto-sp13_S_contig996.21607.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig996.21607.1
Unique NamemRNA_Ecto-sp13_S_contig996.21607.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig996.21607.1 vs. uniprot
Match: A0A6H5K7M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7M0_9PHAE)

HSP 1 Score: 134 bits (337), Expect = 1.910e-35
Identity = 74/82 (90.24%), Postives = 75/82 (91.46%), Query Frame = 3 
Query:  195 GRAAAAPEQQDQASSSSRDRPGDSVAGAARSLLRRRQGCRADRGRDGAEVELSLLPFPPEVMSLALLYAGGKTLSQAACVSK 440
            GRAAAAPEQQ QASSSSRDR GDS+AGAARSLLRRRQGCR   GRDGAE ELSLLPFPPEVMSLALLYA GKTLSQAACVSK
Sbjct:    3 GRAAAAPEQQHQASSSSRDRRGDSIAGAARSLLRRRQGCRVVGGRDGAEAELSLLPFPPEVMSLALLYAEGKTLSQAACVSK 84
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig996.21607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7M0_9PHAE1.910e-3590.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig996contigEcto-sp13_S_contig996:7810..13817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1078
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionKelch repeat type 1
Ec32 orthologEc-26_002180.3
Cds size891
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig996.21607.1prot_Ecto-sp13_S_contig996.21607.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig996 7995..13817 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464255.840614-UTR-Ecto-sp13_S_contig996:7809..79941681464255.840614-UTR-Ecto-sp13_S_contig996:7809..7994Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig996 7810..7994 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464255.85325-CDS-Ecto-sp13_S_contig996:7994..82491681464255.85325-CDS-Ecto-sp13_S_contig996:7994..8249Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig996 7995..8249 +
1681464255.8654559-CDS-Ecto-sp13_S_contig996:11184..113401681464255.8654559-CDS-Ecto-sp13_S_contig996:11184..11340Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig996 11185..11340 +
1681464255.8759224-CDS-Ecto-sp13_S_contig996:12103..121571681464255.8759224-CDS-Ecto-sp13_S_contig996:12103..12157Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig996 12104..12157 +
1681464255.8855386-CDS-Ecto-sp13_S_contig996:12589..126781681464255.8855386-CDS-Ecto-sp13_S_contig996:12589..12678Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig996 12590..12678 +
1681464255.8971555-CDS-Ecto-sp13_S_contig996:13480..138171681464255.8971555-CDS-Ecto-sp13_S_contig996:13480..13817Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig996 13481..13817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig996.21607.1

>prot_Ecto-sp13_S_contig996.21607.1 ID=prot_Ecto-sp13_S_contig996.21607.1|Name=mRNA_Ecto-sp13_S_contig996.21607.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=297bp
MASGRAAAAPEQQDQASSSSRDRPGDSVAGAARSLLRRRQGCRADRGRDG
AEVELSLLPFPPEVMSLALLYAGGKTLSQAACVSKAVHRVVTAKHWETAA
AESRWLQRPTPDPSSFASPGEATRYWRRWSKLSSGAAGSPPGRVVVVGGN
EISSVEGSDKTEAFVDAPYGKTITWEALPRMSMSRSAAGATVDRFGGVYV
LGGWNSGGALSSCERLTHPLVSARQQRQRGGGLGMNGDTPACAARTPAPA
PAAAAAAAAAVSPAPLQRTTGGENGEFSVSAAAVGAAAAAAAGESDW
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mRNA from alignment at Ecto-sp13_S_contig996:7810..13817+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig996.21607.1 ID=mRNA_Ecto-sp13_S_contig996.21607.1|Name=mRNA_Ecto-sp13_S_contig996.21607.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6008bp|location=Sequence derived from alignment at Ecto-sp13_S_contig996:7810..13817+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCCTGTTGCCCCTCGAGACAGGAGGGGGAGAGTGAGGGAGGGAGACCA
GAGCAGTACTCGCTTTCCCAAGCGAAGAAATCTGCGGCTACCCTTTCCAC
CCATCGCCGTGATTCGCCTGGCTTGTGTGTCGCACACCAGGTGTGGCAAA
ATAGTTTTTAGAGGCTACCATCATCGCATCGAAATATGGCCAGCGGCAGA
GCAGCAGCTGCTCCTGAGCAGCAAGATCAAGCGAGCAGCAGCAGCCGTGA
TCGCCCCGGGGACAGCGTCGCTGGTGCAGCCCGCAGCCTGCTTCGACGCC
GTCAAGGGTGCCGAGCGGACCGAGGCCGCGACGGAGCGGAGGTTGAGCTC
TCGCTGCTGCCGTTCCCCCCCGAAGTGATGTCGCTGGCGCTGCTGTACGC
TGGAGGGAAGACGCTGTCTCAGGCTGCATGTGTTTCGAAGGTAGGATCGA
AGTCGGAATGGCAGCGGCAGCGACTGTGGTGTGAAGTGTTACCAGCTCTC
AGCCGTTGAGTGAGTGAACCTAGATCCACTGGAAGAGCCACAGCTACGGA
TGGTGACTGGGTGTGCCCGAGGAAGAAGAGGAGGAGAGAAAGCATTATTA
CCGTGTCAATTGCATGTTGCATTTTTTGCTGAAAACAGCGGTCCGCCGAA
ATTGAACCGCATCATCTCCACCTCTCCTCCCACATGTCCGCTTCATGTGC
ATTAGCTCCACCCAAAAAAAAAAGATGTTGCATGCACATCGCGCACCTGC
CACACCCCGGGTTCATTCACCGTGCGAGTGCGTCCCCGCCCAGTCTTCAC
AGAGAATACACGTCAAAGTTTGCGAGCATCAGCGGGCGCGGGGGCAACAA
TTTTATGTAGTTGGATCATTGAGAGTAGTCTACGTGAAAAGTAGGCCGCT
TTTCTTGCCGCCCTGCACCCGTCGAACGCGTTCAGTCTCGCAGCGAGGGC
ATGCATTGTGTTGTCACTCTCTCCGCCGTCTACACCAGTCCACAACGACA
AGGAGGTGGTGATTGCGTTTGGCATCGATGTAGGTTGTCATTGGACAGGA
GTTGGAGATCCTGCATGTGAGCGCGTGGCCCGGTGCGTCTGGTCATGTGT
CATGCACTTTATTTACACCATATGCAGAAGTGTATGTACAGGTCGGCCAC
AACAACCGTTGGGGTCAGCAGCTGTAGCGGGGGGTACAGGAGTGTACCAC
AAATAGTGCCGGTTTCGTGCCACTGTAAAAGTGGGACAATAGTATGTTTC
GACTCGTCTTAACATCGGAAAAACTACTGAAAGGAATTAATTAGAGCCAG
TGAATCGGGCGGGTACATTGAGGCACTGCTGAGACAGGCACCCCCTTACA
ATAGTGCCGTACTCTGCTGCTGCATTTCCAATGAACCGCACATAACCGGG
AAGGAAATATACCTCAAGCGTCACTAGCAACGGCACAACAGCAGCCCTTT
TTTTAGGATCCCGTCCGTCTGGGCGTCTTAAAAAAGTACTGGACACACGA
GAATACTATTATACTGGACCCGTTGAGCATAACACTCTGTCTGTATTCAA
CTTTCGGTGGCCTTTCGGCGTCCTTGCGGCGGCACGTTCAAAGAAACGTA
TTTCAATTTTTATGTTGGACCGGAAGAACCAAACCCAAAACATCTGCTTC
GAAGAAGTAATCTTTTAGAGCGGTAGAATCGGGTAGATACCGGTCCTCCC
ACCAATTTCAATCACACGTCGATTATGTAGGACGTTGTATTAGACAGAGA
CAGATGATTGGTTCATGGCCACGCCGCTGAGCGAATACCCCGAAAGACGT
TGCACAGCAGCAGCAGCACATGACGCACGTAGACAACACACGAGACAACC
AGCGCGAAATAATATATTTATTTTTTGTTGGACCCATAGTCCATGTATAG
GAGTTGAGCCGTAACAATGTATGCACTTATGCATACGATTCTGGACGCAC
CAGCCCAGGTCACACAGGAGCATAGGTGGCATTCCCAGGGTTCTTCACAT
GTTCGACTGTGGATATGTAAACATATTGTTCGACTGCTGTGGTTATACAA
TATCTCGAACGGGTATAAGTAGTCTTTCTGTTTTTGTGTTTATTTTCCTG
GCATGCAATCGGGGAAGTTGGGTTGGAGAGGAATGCCACACGTCTTTGTC
ATCACTTCAAATCAGCGCTCACGGCACTCGTGCCGTTTACGCCAACCCCG
CGGTCATCCAGAGGCTTTTCTCTCCCTGAGACCCCCTACTCACCCCTCCT
GCGGTATCTATAATACCACTTTGCTTTCGATTTTTAATGCGAGATTGCTT
GCCTTGATTTTCATCGCGAGAAGGATTTCCAGCCGTTCTTCTTGATTGTA
GGATTGTTTGCTCGACATTTTGACAACACCCACCTACTGCAGCAGACTTC
AACATACCCCCCTTCGATTGCTGTGGTTATACATACAACCTTGATTGGTG
GACTATTCATTAGGAAAATGAATGCAAACACAGAAAGACTGGACGTTCCA
GATACAACCACAGCGAACGGGTAGGCTATTGTATGCATAGTCTTCCTGGA
TGTATGCTTATTTTCTCAACAACCGTTCGCAACAAACATACCCCCCTCTC
TCTTTTTGTTTCGATCGGTGGCTGCGGCGTTCCTTCTGTCGTGCTTGCCT
TGATGTTTTGTGCGAGAAGGATGGGATTTCCAGCCGTTCCTCTTCATGGT
TGGATTCATTTGCTCGACATTCTCGAAACACAAAAGAATTCCATTCGCTG
CAAAGGCTGTGTTACATCTCCCTGTCGACTGCCAAGCGGTGTGTGGATCG
AACGGGTAGGCCGGTCTCTCTCATGTGATTGAAAGCAATTTTCTTCGGCC
TTTATTTTGATCGCGAGAGGGATTCAGCCGTTCTGGCTTCTTTTGCCGTC
GGCATCATTCTAAAAAACAAGAGTCATTCTCCCCTCTACCTCTTGTTGTT
TCGATCGGTGCAGCCTTTCTTCTGCGGTGCCTGCCTTAACTTTTTAGCAT
CGCTAGAAGGATTCAGCCGTTCCTTTCGTAGACTTTTTTTTTTTGTCATT
CTGGCAACAACGAGAGTCATGTCTTCCTCTCTCTTTTTGTTTCGATCGGC
GGCTGCGTCGCAAGCAGCGCGAAAACAGTATACGAAGTTGTTGTTGTTGT
TGTTGTTGTTGTCGTCTTCACATTTTAAACCGTTCTTATCTCTCTACCCA
GCACCTTCATCTGTCGTGATGACAAAACAACGAGCGATCCCTGTGGTCAC
AGGCTAACGTACCTAAAAAGGTACAGTGTACTCAAACAAAACGGACCCGA
ATACGAAGTAGTATTTTCTAAAAAATCGTGATCCCTTCTCTTGGTTGTTT
CGATCGGCGGCTGACGGCCCCATAGGCGGTGCACCGGGTCGTTACCGCCA
AGCACTGGGAGACGGCCGCTGCCGAAAGCCGATGGCTGCAGAGGCCGACG
CCGGACCCTTCGTCGTTCGCCTCGCCGGGGGAAGCGACGCGCTACTGGAG
GCGGTGGAGTAAGCTCTCGTCCGGCGCCGCGGTGGGTGGGACGTTGACGG
TGACTGTTGTGGAGGGAGCTCTCAGCGTTTTTCTTCAGGGGGGGGCGGGG
GAGGGAGAGGGAAGGAGAAATGGAGAGAGAGAGACACACACACAAAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GGGAGAGATGGATAGAGAGTCAGAGAAAGAGAGAGAGACAGAGAGATAGA
GACAGAGACAGAGACAGAGAGAAAGACAGAGGGGGAGACATGAAGACAAA
GAGAGAGAGAGGGACAGAGAGGGAGAGGGACAGAGAGGGAGGGAGAGAGA
GGGAGAGGGAGAGGGAGAGGGAGAGGAAGACAGAAAGACAAAAGATGACC
GTTGCTCTGTGGTTCGACCCCCGCTCAAACAGTCGAGGGGAACAAGTTGC
CCTCTCCTTTTTCTGCGGCACTGATGACATCTCTCCGGTAGCCTGGAAAT
CCCTTGTGGTTCGGATGAAGTCCCTTGTTGTACATGCCGCAAGCACCGAC
GCCGTACCCCAGCGGGAATCGGCATCCTCCTACTGTCATGACCTACCTCA
CAAAGTGCATTAGCAGTGTGTGTCACAGCAGAACAGGGAGGGCGGGGGTT
GGGAGGGAGAAGAGGCCGTGTTTTCCGGAATGGTGTGCTTATGAGAGCTT
GGGCGTGCGCTTACATGGCCATCCCTACGTGTTGTTAAAAACGTTCTCCC
TTCTTGATTATTGTGTTCCCGACTCCTCTTTTTCGCTTTTTTAGGGGTCC
CCGCCAGGGCGTGTGGTTGTCGTGGGGGGCAACGAGATATCTTCAGTGGT
GAGTGAACCGTGAACATTTTTTCCTTGTGTTGCTGTGTATTTTTGCGTCG
GAGGTAGCATGAATCGTACATGGCAAGTAGGCCCCTTCCAACACATGCTA
GAAGATGTGGTTTCGTGTCGCCGTATCCCCCCCGCCCCCCCTCCCACAGT
GTGTTTTATTCACCCGGCCCCTTGGAAAACAGCCGCGAGAATGAAAGACG
GGAGGGGGAGGGAGGGGGGGGTGTTGAGGACTATTTTCTCGTGCGCGAAA
GTAAGTGGGCTAAACGGTTTAGTAGGACTGTTTGGGTTAAATTTGGAGCA
GGAAAAAATCCTTCATCTTGAACAGGGGGTGCAAAGCCGAAGGTTCACGA
TTAATTATATTGTCAACACAGTAGGATACCATGTCAACACAGAGTAGAAT
ACCCACCCTCTCTCTTACGGAATTGAGCAGGAAGGCTCGGACAAAACGGA
GGCCTTCGTCGATGCGCCGTACGGCAAGACCATCACGTGGGAAGCTCTGC
CGAGGATGTCCATGTCTCGGTAAGTAAGCCGGGGCTGGATGGGTGCGCGT
GTGTGGAATAATGGTGGTGGACCCGTCGGTGCGCACCTGGTGGGTGTTGA
TTTCGACGAAGGACACAGGTTACGCGGTGCTCTTGCCCCCCCGGGAGCGT
TGGTCTAAGGGTTGTTCAATAATTGGCTTCGTGAACTCATGACTAAGCGA
GTTACGGATCCGGTGATTACTATGAGTATTTTTCTTTTGATGCCACCCCT
CCCGAACCGACCGCACGGTCTTCTTTACCCCTATTACCGAGGAGCTCTCA
TCGGGGATTTCACCAAACACCACCTCTGCGGTGCTTCTGTCCCATTAGTC
TCGCCGCAGGAAGGAATGGTTTATTTTTGCCATTTTCCCTCTACAGCTGA
GGCGGTTTGTACCCCTCAAAACCAAGCTGAAGGAATACCCCCCCCCCCCA
CCCTCCTCCGCTCTCACGCACTCCGCTCTCACGTGCCCCGCTCTCACGCT
CTCCTCTCGTGGGTACGAAACCTGCGTTGAGAATGCGGCCTAATCGATTC
CACGCATTCGTGCCTCGCGTCACTCCCCCGGGAGGTAATTTCCCTTATTC
CATAGTGTCGCCACACGCCTGGAAACGAAGTTAGTGGACTGCTCGGAATT
TCGTTTCCCATCTTTGACCAAAACCTTGTCTGTCTCTGTCTCTTATCTGT
TCCTGTCGCTTCTCCCTCTCTCGCTCTCCCTCTCTTGCTCTCTGTCTGTT
TCTCTCCCCCCGTACAACTTGCACGAAACCATTGTTTTATTTCCTGTGGG
CTGACTGGCTGGGCGGAGCAGGAGCGCCGCCGGCGCGACGGTGGACAGGT
TCGGCGGCGTCTACGTCCTGGGAGGGTGGAACAGCGGGGGTGCTCTGAGT
TCTTGCGAACGCCTCACCCACCCCCTAGTCTCCGCTCGGCAGCAGCGGCA
GCGGGGGGGAGGTCTTGGGATGAACGGCGATACCCCCGCTTGCGCCGCGC
GCACTCCAGCTCCGGCTCCAGCAGCAGCAGCAGCAGCGGCGGCTGCGGTG
TCTCCGGCACCGCTACAACGAACGACGGGTGGGGAAAACGGCGAGTTCTC
TGTGTCGGCCGCGGCGGTGGGAGCGGCGGCGGCGGCGGCGGCGGGGGAAT
CAGACTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig996:7810..13817+

>mRNA_Ecto-sp13_S_contig996.21607.1 ID=mRNA_Ecto-sp13_S_contig996.21607.1|Name=mRNA_Ecto-sp13_S_contig996.21607.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=891bp|location=Sequence derived from alignment at Ecto-sp13_S_contig996:7810..13817+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAGCGGCAGAGCAGCAGCTGCTCCTGAGCAGCAAGATCAAGCGAG
CAGCAGCAGCCGTGATCGCCCCGGGGACAGCGTCGCTGGTGCAGCCCGCA
GCCTGCTTCGACGCCGTCAAGGGTGCCGAGCGGACCGAGGCCGCGACGGA
GCGGAGGTTGAGCTCTCGCTGCTGCCGTTCCCCCCCGAAGTGATGTCGCT
GGCGCTGCTGTACGCTGGAGGGAAGACGCTGTCTCAGGCTGCATGTGTTT
CGAAGGCGGTGCACCGGGTCGTTACCGCCAAGCACTGGGAGACGGCCGCT
GCCGAAAGCCGATGGCTGCAGAGGCCGACGCCGGACCCTTCGTCGTTCGC
CTCGCCGGGGGAAGCGACGCGCTACTGGAGGCGGTGGAGTAAGCTCTCGT
CCGGCGCCGCGGGGTCCCCGCCAGGGCGTGTGGTTGTCGTGGGGGGCAAC
GAGATATCTTCAGTGGAAGGCTCGGACAAAACGGAGGCCTTCGTCGATGC
GCCGTACGGCAAGACCATCACGTGGGAAGCTCTGCCGAGGATGTCCATGT
CTCGGAGCGCCGCCGGCGCGACGGTGGACAGGTTCGGCGGCGTCTACGTC
CTGGGAGGGTGGAACAGCGGGGGTGCTCTGAGTTCTTGCGAACGCCTCAC
CCACCCCCTAGTCTCCGCTCGGCAGCAGCGGCAGCGGGGGGGAGGTCTTG
GGATGAACGGCGATACCCCCGCTTGCGCCGCGCGCACTCCAGCTCCGGCT
CCAGCAGCAGCAGCAGCAGCGGCGGCTGCGGTGTCTCCGGCACCGCTACA
ACGAACGACGGGTGGGGAAAACGGCGAGTTCTCTGTGTCGGCCGCGGCGG
TGGGAGCGGCGGCGGCGGCGGCGGCGGGGGAATCAGACTGG
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