mRNA_Ecto-sp13_S_contig9830.21478.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9830.21478.1
Unique NamemRNA_Ecto-sp13_S_contig9830.21478.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9830.21478.1 vs. uniprot
Match: A0A6H5KMV8_9PHAE (Asp_Arg_Hydrox domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMV8_9PHAE)

HSP 1 Score: 247 bits (631), Expect = 3.170e-79
Identity = 132/147 (89.80%), Postives = 136/147 (92.52%), Query Frame = 1 
Query:    1 MRPACLQAAVPLAVLLCSSDRSGAFIAQAPATV-SSGGCSSTSICSGALVQPRQDRQATVLHHLDWRHRPGRSARHVVFLERADRDKAFELLETYIERESDAGEREDYDRIRRLVPHMRKRLWKASSREQEDATEQLGMDDFQFATK 438
            MR ACLQAAVP+AVLLCSSD S AFIAQAPA   SS GCSSTS CSGA+ QP+Q RQATVLHHLDWRHRPGRSA+HVVFLERADRDKAFELLETYIERESDAGEREDYDRIR LVPHMRKRLWKASSREQEDATEQLGMDDFQFATK
Sbjct:    1 MRHACLQAAVPVAVLLCSSDWSSAFIAQAPAAAASSSGCSSTSTCSGAIRQPQQGRQATVLHHLDWRHRPGRSAQHVVFLERADRDKAFELLETYIERESDAGEREDYDRIRGLVPHMRKRLWKASSREQEDATEQLGMDDFQFATK 147
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9830.21478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KMV8_9PHAE3.170e-7989.80Asp_Arg_Hydrox domain-containing protein n=2 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9830contigEcto-sp13_S_contig9830:3463..6140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score262.3
Seed ortholog evalue1.3e-67
Seed eggNOG ortholog2880.D8LH92
Model size438
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.Aspartyl/Asparaginyl beta-hydroxylase
EggNOG OGs2E6F7@1,2SD50@2759
Ec32 ortholog descriptionbeta-hydroxylase, aspartyl/asparaginyl family
Ec32 orthologEc-24_001040.1
Cds size438
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464246.265237-CDS-Ecto-sp13_S_contig9830:3462..37041681464246.265237-CDS-Ecto-sp13_S_contig9830:3462..3704Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9830 3463..3704 +
1681464246.276743-CDS-Ecto-sp13_S_contig9830:4393..45381681464246.276743-CDS-Ecto-sp13_S_contig9830:4393..4538Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9830 4394..4538 +
1681464246.2868083-CDS-Ecto-sp13_S_contig9830:6089..61401681464246.2868083-CDS-Ecto-sp13_S_contig9830:6089..6140Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9830 6090..6140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9830.21478.1prot_Ecto-sp13_S_contig9830.21478.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9830 3463..6140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9830.21478.1

>prot_Ecto-sp13_S_contig9830.21478.1 ID=prot_Ecto-sp13_S_contig9830.21478.1|Name=mRNA_Ecto-sp13_S_contig9830.21478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp
MRPACLQAAVPLAVLLCSSDRSGAFIAQAPATVSSGGCSSTSICSGALVQ
PRQDRQATVLHHLDWRHRPGRSARHVVFLERADRDKAFELLETYIERESD
AGEREDYDRIRRLVPHMRKRLWKASSREQEDATEQLGMDDFQFATK
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mRNA from alignment at Ecto-sp13_S_contig9830:3463..6140+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9830.21478.1 ID=mRNA_Ecto-sp13_S_contig9830.21478.1|Name=mRNA_Ecto-sp13_S_contig9830.21478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2678bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9830:3463..6140+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCCTGCCTGTCTGCAAGCAGCGGTGCCACTGGCCGTACTCCTTTG
CTCCTCGGACCGGTCTGGCGCTTTCATCGCGCAAGCTCCGGCTACCGTTA
GTAGCGGCGGTTGCTCGTCTACTTCAATCTGCTCTGGTGCACTCGTGCAA
CCACGGCAGGACAGACAGGCGACGGTTCTGCACCACCTCGACTGGAGACA
TCGCCCCGGGAGAAGTGCACGGCACGTGGTGTTTTTGGAACGGTGAGCAG
AGGGATGGTGCGTTCAATATTAACATTATTTCTACAGCAGTACTTGCATA
AAAGTGTAGCCTTATCTTCGCAGTTTCGTCAGCGTCAGCGGGCAGAAACA
GTCCTCTCGAGGTCTGTTAAAGCTGTTGATTTGCATTTAGGGCAGTGTTC
GACCTATTGCCTGCAGCAGCGCGAGCGTGCAGTTTCGTGCCGCTCTCACG
AGCGCCCGCCAACCAACTGCTGTATCCACATCATGAGCACCTACCTACGT
AGACCAGCATTTAGAGGGGCCACGAGGCGGTGGAAGAACCCTTGAGAGCA
ACGCTCCGTGACTTCGAAAGAAGCACGCACATCGGGATCGGACGCCCGAT
ACGTGTATTGCCTAGACCTGCTCGGGTCTTCTGAGACATGTTTTTTTCGG
TCGTTCTTCTTGCCGGGCGTACACGAGAAGAGCAGAAACCCGTGTAGGGC
AGGGAAACCGCGGTTCCTCGCCAGAGAAGTTGCCTGCACGCAACCACTTT
CGCATACGTCGTGGCAAAGGTTTTTCAAATGGTAAAGTTGCATCACAGCA
GTTCGCAAAGCTGGTAGCAGTCACCAAACCTAGCGCGTACTGCCTCTGTG
TCCATTTACACAGCAGAGAACGTGAGAACCTTCACTCCGTCTGTTTCGTA
CTCCTTCCGATCGAACATGCATCGAAAAAAGCGCGGACCGCGACAAGGCC
TTCGAGTTGCTGGAGACCTACATCGAGCGGGAGAGCGACGCCGGCGAGCG
GGAGGACTACGACCGCATCCGACGGCTCGTGCCGCATATGAGGAAACGCT
TGTGGAAGGCGTCCTCCAGAGAGCAGGTTTGGCACGTCCTCGTTCTCTTG
CTATCTAGGTGGCAAGCAGCAGTGTCGTTTACGGACCTGGTATATATGCC
GCACGATGAGTCCCTCGATGTCTACTGCAGCTTGATAAGTGGTTTTTCGG
AGAGGGGAACGGTTGTGAGGAAGGGGTGCAAGTTTTATGTTTGTGCTTTA
TCGTATCCCCCCATACTTCTTCCACGACCTATCAATGAAGCAAGTTTCCA
GGAACGACCCGGTGTAGTCGGATAAAGACGATTGGCGAAGGCATCCCCCG
CAGAACTGGCAGCATCCTCCTCTTGGCGGTATAGATCCCGCACCTCTCGT
GCCTACCCCAGGTCATACGGTCCGTCGGGGGACAACTTTCCATAATTCCG
ACCTGCACTTACGTCAACTTTTCTCGGAGGTGGGGGGGTTGTTCCGAAAA
CCGAAAGTACCGGCAAACGCCCTGTCTCCAGGCGCGTGTCCCTGGGGAGT
TTTCTTTTTTTTTTGTTCTTAATCGTCTTGCATTTAAACATGACCGGAAA
ATATCGTTCGCAATGACCTGGGGGTGTCTGTTTCTCAGAACACAATTCTG
AGACCGGATTTGGACAGCTCTCGGAATTCCCCAGACGGACAAAGTTTCCG
AATTTGATTTGAGTAAAAACACAAGAAGTTATCGGCGAAAAACTGGATTT
TGGAGACCAGTTTCTCCGCAATGGTTCTCTGACATACAACCACGGCACTT
GAGAATGACCACGGCAATCGATTCCTCTCGTACAATGTAGTCCCCAAGAC
GGAAAACTTTTCCGATTTTCAAATAAAAATCTAGTTCGCGAGATATTCCG
TGGTTTGTTTTGCTGCTAGGGGCATTTGCTTTCCTGCCACACACCACACA
CATACCCCTTGTGCGAGGGCGCAACCATGCGCCCTACATATGCATATGTA
TGCATATGCATGTGATTTGAACGTGTGTTTAAATGTTTGTAAGCATGGAA
GTATGCATACTCTGCACATAAGCAGTTACAATTGGTGCAGAGCTTGAAAG
CACTGGGGTTTCTGTGTGTAAGGGGGTTTCGTGGCGTAATTGGGGGTTTC
GTGGTATGATTGGGGGGTTCCGTGGTATGGTCAGATGGTTCCGTGGTATG
GTTAGGGGGTTCCATGGTATAAATGAGGGGAACCATGCACGTTTAGGGGG
TTCCGTGGATCATTTTGGCCAAAAATGTTGCATTTCTCAAAGCTAAAAAA
ACTCTGCAGCTATCGACGTAGCTCGACGAGGCGATCACGAATATCGTAAT
TTCATATTCCAACTCTTTTTTTTTACAAAAGTTATCGCACAAAACGCGGA
TGGAAAAATTGTTCCAGACGGACCATAGCTTGTTTTATCAAGCCGGCCAC
ACGTTTCGAACCGTGACGAGATTCCTACGGCACTTGCGTATTGCCGACGT
CGCCTGTTCTTTTGTGTTCACGTGGCGAATGTTCTTGGCCTGCGGGTAGA
TATATACAATCATTTTGTTTTGTGCGTGTGTGCCGAAACGTGCGTCATGT
CGCCCTTTGTTGTTACAACTTGTTCAGGAGGACGCAACGGAACAGTTGGG
CATGGACGATTTCCAGTTCGCGACGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9830:3463..6140+

>mRNA_Ecto-sp13_S_contig9830.21478.1 ID=mRNA_Ecto-sp13_S_contig9830.21478.1|Name=mRNA_Ecto-sp13_S_contig9830.21478.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9830:3463..6140+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCCTGCCTGTCTGCAAGCAGCGGTGCCACTGGCCGTACTCCTTTG
CTCCTCGGACCGGTCTGGCGCTTTCATCGCGCAAGCTCCGGCTACCGTTA
GTAGCGGCGGTTGCTCGTCTACTTCAATCTGCTCTGGTGCACTCGTGCAA
CCACGGCAGGACAGACAGGCGACGGTTCTGCACCACCTCGACTGGAGACA
TCGCCCCGGGAGAAGTGCACGGCACGTGGTGTTTTTGGAACGCGCGGACC
GCGACAAGGCCTTCGAGTTGCTGGAGACCTACATCGAGCGGGAGAGCGAC
GCCGGCGAGCGGGAGGACTACGACCGCATCCGACGGCTCGTGCCGCATAT
GAGGAAACGCTTGTGGAAGGCGTCCTCCAGAGAGCAGGAGGACGCAACGG
AACAGTTGGGCATGGACGATTTCCAGTTCGCGACGAAG
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