mRNA_Ecto-sp13_S_contig9743.21386.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9743.21386.1
Unique NamemRNA_Ecto-sp13_S_contig9743.21386.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9743.21386.1 vs. uniprot
Match: D7FS49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS49_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.050e-17
Identity = 53/62 (85.48%), Postives = 55/62 (88.71%), Query Frame = 2 
Query:  284 MGVRLLGSPRSRRACPPAGVPPASGRAAAXXXXXXXX-EGVGLREAGWGSGAQPQGPRDRRV 466
            MG RLLGSPR RRACPPAGVPPASGRAAAXXXXXXXX EGVGLRE GWG+ AQP  PRDRR+
Sbjct:    1 MGARLLGSPRFRRACPPAGVPPASGRAAAXXXXXXXXXEGVGLREEGWGAAAQPPEPRDRRL 62
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9743.21386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FS49_ECTSI1.050e-1785.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9743contigEcto-sp13_S_contig9743:543..1413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size549
Hectar predicted targeting categoryother localisation
Exons2
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464237.770108-UTR-Ecto-sp13_S_contig9743:542..5891681464237.770108-UTR-Ecto-sp13_S_contig9743:542..589Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9743 543..589 -
1681464237.7942543-UTR-Ecto-sp13_S_contig9743:940..9431681464237.7942543-UTR-Ecto-sp13_S_contig9743:940..943Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9743 941..943 -
1681464237.8044176-UTR-Ecto-sp13_S_contig9743:1265..14131681464237.8044176-UTR-Ecto-sp13_S_contig9743:1265..1413Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9743 1266..1413 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464237.7821507-CDS-Ecto-sp13_S_contig9743:589..9401681464237.7821507-CDS-Ecto-sp13_S_contig9743:589..940Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9743 590..940 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9743.21386.1prot_Ecto-sp13_S_contig9743.21386.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9743 590..940 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9743.21386.1

>prot_Ecto-sp13_S_contig9743.21386.1 ID=prot_Ecto-sp13_S_contig9743.21386.1|Name=mRNA_Ecto-sp13_S_contig9743.21386.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
MPVGGAPITPTCTSSTCCCSSSSNNSSRQRRPASTTTPAGGLRTMGVRLL
GSPRSRRACPPAGVPPASGRAAATASAAAAAEGVGLREAGWGSGAQPQGP
RDRRVRWRRMETRCAA*
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mRNA from alignment at Ecto-sp13_S_contig9743:543..1413-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9743.21386.1 ID=mRNA_Ecto-sp13_S_contig9743.21386.1|Name=mRNA_Ecto-sp13_S_contig9743.21386.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=871bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9743:543..1413- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGCTGCGGCGGTTGGCGGCGGGAAGACTCCCGAGCAGTGCTTTAA
CCGTTGGCACGCAGAGTACAGCCAACAGGCTGCCCTCGAACAGCAGCAAC
AGCAGCATCAGCAGTGGTTGCTCCAACAACAGCATCAGGCCGGTCAGGGT
AAGTTCTTACCTCACACTTTTACGCGGCGAAGGCGTTGTATCGTTTCGAC
GAGAAGCAACCAGAGGTGAACGCTTTCCTGGAAGGACACGACGATCATTA
CCAAGCTCTTGCAAGTACAGCCATCAATCACGTGTATCTGTTTCTGTGCT
CTTTTGGTCCCAACAAAAGCACAGCAGTTTCATGGTGAGATTGAACCCGT
CACACAATTCAATACCCCAACGCCGCATCGACAAGATTATGTTGGTCTTG
GGGAGTTAAAAACACCCTCGCTTCCCACCCGCCTCTCCGCAATCCCCACA
TGCCACCCACAACCATCTAGCTCATGCCGGTGGGGGGAGCGCCCATCACC
CCCACCTGTACCAGCAGCACCTGCTGCTGCAGCAGCAGCAGCAACAACAG
CAGCAGGCAGCGCCGGCCAGCGAGCACCACTACGCCCGCTGGGGGTCTCC
GTACGATGGGCGTCCGTCTGCTAGGGAGCCCGAGGTCCAGACGAGCTTGT
CCGCCGGCTGGCGTCCCCCCGGCTTCGGGGCGAGCGGCGGCTACGGCTTC
GGCAGCGGCGGCCGCGGAAGGAGTTGGGCTGAGGGAAGCGGGATGGGGCT
CGGGGGCGCAGCCGCAGGGGCCGCGGGATCGACGGGTAAGATGGCGGAGG
ATGGAGACGCGGTGCGCGGCCTAAACATGTTGGCGCAAGCGGCATCTGCG
TCCGAAGAGGAGGAGGGAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9743:543..1413-

>mRNA_Ecto-sp13_S_contig9743.21386.1 ID=mRNA_Ecto-sp13_S_contig9743.21386.1|Name=mRNA_Ecto-sp13_S_contig9743.21386.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9743:543..1413- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCGGTGGGGGGAGCGCCCATCACCCCCACCTGTACCAGCAGCACCTG
CTGCTGCAGCAGCAGCAGCAACAACAGCAGCAGGCAGCGCCGGCCAGCGA
GCACCACTACGCCCGCTGGGGGTCTCCGTACGATGGGCGTCCGTCTGCTA
GGGAGCCCGAGGTCCAGACGAGCTTGTCCGCCGGCTGGCGTCCCCCCGGC
TTCGGGGCGAGCGGCGGCTACGGCTTCGGCAGCGGCGGCCGCGGAAGGAG
TTGGGCTGAGGGAAGCGGGATGGGGCTCGGGGGCGCAGCCGCAGGGGCCG
CGGGATCGACGGGTAAGATGGCGGAGGATGGAGACGCGGTGCGCGGCCTA
A
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