mRNA_Ecto-sp13_S_contig9733.21370.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9733.21370.1
Unique NamemRNA_Ecto-sp13_S_contig9733.21370.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9733.21370.1 vs. uniprot
Match: A0A6H5KLB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLB3_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 4.980e-39
Identity = 85/92 (92.39%), Postives = 86/92 (93.48%), Query Frame = 1 
Query:    1 GEGLPYGPVGTTWAVINAQWWRQWRDYVRIGFDATMPRGSLSRVSSNSSIASXXXXXXXXXRQGPPATVAGAGVRSGTVPNGRTSGGAVGGD 276
            GEGLPYGPVGTTWAVINA+W   WRDYVRIGFDATMPRGSLSRVSSNSSIASXXXXXXXXXRQGPPATVAGAGVRSGTV NGR SGG VGGD
Sbjct:  620 GEGLPYGPVGTTWAVINARWLAGWRDYVRIGFDATMPRGSLSRVSSNSSIASXXXXXXXXXRQGPPATVAGAGVRSGTVANGRASGGGVGGD 711
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BLAST of mRNA_Ecto-sp13_S_contig9733.21370.1 vs. uniprot
Match: D8LR49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR49_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 2.420e-26
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 GEGLPYGPVGTTWAVINAQWWRQWRDYVRIGFDATMPRGSLSRVSSNSSIA 153
            GEGLPYGPVGTTWAVINAQWW QWRDYVRIGFDATMPRGSLSRVSSNSSIA
Sbjct:  558 GEGLPYGPVGTTWAVINAQWWAQWRDYVRIGFDATMPRGSLSRVSSNSSIA 608
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9733.21370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KLB3_9PHAE4.980e-3992.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LR49_ECTSI2.420e-2698.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9733contigEcto-sp13_S_contig9733:1737..2518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score110.5
Seed ortholog evalue4.1e-22
Seed eggNOG ortholog2880.D8LR49
Model size276
KEGG koko:K11837
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5560@1,KOG1870@2759
EC3.4.19.12
Cds size276
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464236.777185-CDS-Ecto-sp13_S_contig9733:1736..18441681464236.777185-CDS-Ecto-sp13_S_contig9733:1736..1844Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9733 1737..1844 +
1681464236.7928674-CDS-Ecto-sp13_S_contig9733:2350..25181681464236.7928674-CDS-Ecto-sp13_S_contig9733:2350..2518Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9733 2351..2518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9733.21370.1prot_Ecto-sp13_S_contig9733.21370.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9733 1737..2518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9733.21370.1

>prot_Ecto-sp13_S_contig9733.21370.1 ID=prot_Ecto-sp13_S_contig9733.21370.1|Name=mRNA_Ecto-sp13_S_contig9733.21370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
GEGLPYGPVGTTWAVINAQWWRQWRDYVRIGFDATMPRGSLSRVSSNSSI
ASNGGGSSSGGRQGPPATVAGAGVRSGTVPNGRTSGGAVGGD
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mRNA from alignment at Ecto-sp13_S_contig9733:1737..2518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9733.21370.1 ID=mRNA_Ecto-sp13_S_contig9733.21370.1|Name=mRNA_Ecto-sp13_S_contig9733.21370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=782bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9733:1737..2518+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGAGGGGCTCCCTTACGGTCCGGTAGGGACCACGTGGGCGGTGATAAA
CGCGCAGTGGTGGAGGCAGTGGAGAGACTATGTTCGCATCGGCTTTGACG
CTACCATGGTGAGAGAGAGAAGAGAAAGCTTGGTGGGGGGCGAGAGGGGG
GGGGATATGGTGTTGTTTGGCCGTCCCAGGTATTGGGGTGTCCGTGCGAA
ACGCTCGATCGACGCACACGCACTTACGTGTACCCTTGGCTTTTTTCTTT
TTTTTTGACAGGGATTTTGATTTTTGAGTCACTGAGCCTGTGTGTTCGTT
GAAGGCAAGCCTGCACCACACGCTCTTGTTGAAAGGTTGATAATCATAAT
TTGGTGCAAGCGCATGCTTTGTTGTTGTGCACAAGGATTCAGAAGCAATC
CCATCCATTATCCATGTTCCCTCCAATCGCGGGGGTGCATGGTGAGGCGA
GCATGCGCGCTACGACTGTCCCGTGCACACACACGGGCGACAGCGGTTTA
AGTAGCGCTGACAAGCATGCTTTCGCCCCCCCGCCGCCACTACCCCCAAC
CGTCCCGCCCGTCTACCCGCCCTGTCATCCGACGCTAACCGCCGACGTTC
CCAAATCCGCGCAGCCCCGAGGGAGCCTGAGCCGCGTCAGCAGTAACAGC
AGCATCGCGTCGAACGGCGGCGGTAGCAGCAGCGGCGGTCGCCAAGGGCC
TCCTGCCACCGTCGCGGGGGCGGGGGTCAGAAGCGGAACCGTTCCCAATG
GCAGGACCTCCGGGGGGGCCGTTGGCGGCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9733:1737..2518+

>mRNA_Ecto-sp13_S_contig9733.21370.1 ID=mRNA_Ecto-sp13_S_contig9733.21370.1|Name=mRNA_Ecto-sp13_S_contig9733.21370.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9733:1737..2518+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTGAGGGGCTCCCTTACGGTCCGGTAGGGACCACGTGGGCGGTGATAAA
CGCGCAGTGGTGGAGGCAGTGGAGAGACTATGTTCGCATCGGCTTTGACG
CTACCATGCCCCGAGGGAGCCTGAGCCGCGTCAGCAGTAACAGCAGCATC
GCGTCGAACGGCGGCGGTAGCAGCAGCGGCGGTCGCCAAGGGCCTCCTGC
CACCGTCGCGGGGGCGGGGGTCAGAAGCGGAACCGTTCCCAATGGCAGGA
CCTCCGGGGGGGCCGTTGGCGGCGAC
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