mRNA_Ecto-sp13_S_contig9689.21321.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9689.21321.1
Unique NamemRNA_Ecto-sp13_S_contig9689.21321.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9689.21321.1 vs. uniprot
Match: D7G069_ECTSI (Non-structural maintenance of chromosomes element 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G069_ECTSI)

HSP 1 Score: 435 bits (1119), Expect = 9.620e-149
Identity = 220/232 (94.83%), Postives = 223/232 (96.12%), Query Frame = 3
Query:    3 IDGDAFLDSIKKHFGRTKGDDEQGVETFNWAKWGGNVSMVYLATPEGGGFMMGPLDKPAKERKAAQRREKHIDDAEEITPMMEMKGSKKAKQNKDQTQMRIAKMRAHERQKEDAGSKKDMFETLINPKSFTQTVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQSTLSGDAPPAASGDAKQWLMSFTPADFRELKELYGMEESNFDHRSEGPKSDYYDPLTHGNRESNRQ 698
            IDGDAFLDSIKKHFGRTKGDDEQGV+TFNWAKWGGNVSMVYLATPEGGGFMMGPLDKP KERK AQRREKHIDDAEEITPMMEMKG KKAKQNKDQTQMRIAKMR HE  KEDAGSKKDMFETL+NPKSFTQTVENLFDFSFFVK GEGHITIDPETKLPQVKFD ST SGDAPPAASGDAKQWLMSFTPADFRELKELYGMEESNF+HRSEGPKSDYYDPLTHGNRESNRQ
Sbjct:  217 IDGDAFLDSIKKHFGRTKGDDEQGVKTFNWAKWGGNVSMVYLATPEGGGFMMGPLDKPVKERKTAQRREKHIDDAEEITPMMEMKG-KKAKQNKDQTQMRIAKMREHE--KEDAGSKKDMFETLVNPKSFTQTVENLFDFSFFVKRGEGHITIDPETKLPQVKFDPSTQSGDAPPAASGDAKQWLMSFTPADFRELKELYGMEESNFEHRSEGPKSDYYDPLTHGNRESNRQ 445          
BLAST of mRNA_Ecto-sp13_S_contig9689.21321.1 vs. uniprot
Match: A0A6H5JPS6_9PHAE (Non-structural maintenance of chromosomes element 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPS6_9PHAE)

HSP 1 Score: 229 bits (585), Expect = 1.080e-72
Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 3
Query:  360 MFETLINPKSFTQTVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQSTLSGDAPPAASGDAKQWLMSFTPADFRELKELYGMEESNFDHRSEGPKSDYYDPLTHGNRESNRQ 698
            MFETLINPKSFTQTVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQST SGDAPPAASGDAKQWLMSFTPADFRELKELYGMEESNF+HRSEGPKSDYYDPLTHGNRESNRQ
Sbjct:    1 MFETLINPKSFTQTVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQSTPSGDAPPAASGDAKQWLMSFTPADFRELKELYGMEESNFEHRSEGPKSDYYDPLTHGNRESNRQ 113          
BLAST of mRNA_Ecto-sp13_S_contig9689.21321.1 vs. uniprot
Match: A0A6H5JT36_9PHAE (Non-structural maintenance of chromosomes element 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT36_9PHAE)

HSP 1 Score: 203 bits (516), Expect = 1.920e-60
Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 3
Query:    3 IDGDAFLDSIKKHFGRTKGDDEQGVETFNWAKWGGNVSMVYLATPEGGGFMMGPLDKPAKERKAAQRREKHIDDAEEITPMMEMKGSKKAKQNKDQTQMRIAKMR 317
            IDGDAFLDSIKKHFGRTKGDDEQGV+TFNWAKWG NVSMV+LA PEGGGFMMGPLDKPAKERKAAQRREKHIDDAEEITPMMEMKGSKKAKQNKDQTQMRIAKMR
Sbjct:  118 IDGDAFLDSIKKHFGRTKGDDEQGVQTFNWAKWGSNVSMVFLAAPEGGGFMMGPLDKPAKERKAAQRREKHIDDAEEITPMMEMKGSKKAKQNKDQTQMRIAKMR 222          
BLAST of mRNA_Ecto-sp13_S_contig9689.21321.1 vs. uniprot
Match: A0A835YSI9_9STRA (Non-structural maintenance of chromosomes element 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSI9_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 4.810e-17
Identity = 74/207 (35.75%), Postives = 106/207 (51.21%), Query Frame = 3
Query:   87 NWAKWGGNVSMVYLATPEGGGFMMGPLDKPAKER---------KAAQR--REKHIDDAEEITPMMEMKGSKKAKQNKDQTQMRIAKMRAHERQKEDAGSKKDMFETLINPKSFTQTVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQSTLSGDAPPAASGDAKQWLMSFTPADFRELKELYGME--ESNFDHRSEGPKSDYYDPL 668
            +WA  G  VS      P     M+GPLDKP             +A QR  ++K  D+ E + P+   +G K+A+Q KD  Q+R   M+    +    G   +  + ++NP SFTQTVEN+FDF+F++K+G   + +D E      +F +     DA  A+    KQ ++SFT  DF+ L EL G+E  E     R  G  SDYYDPL
Sbjct:  167 DWAMIGHAVSPCIRCIPRMD-LMLGPLDKPKYXXXXXXXXXVVRAVQRERKQKPKDNFERVVPITVKEGGKEAEQ-KDPQQIRQTAMKDRFLE---PGRSAEFAKFIMNPNSFTQTVENMFDFTFYIKNGLTGLAVDKEAGKLNTQFTRILSQDDA--ASRSSNKQSVLSFTRQDFKNLIELCGLEGQEPMIPARPMGAGSDYYDPL 366          
BLAST of mRNA_Ecto-sp13_S_contig9689.21321.1 vs. uniprot
Match: A0A835Z541_9STRA (Non-structural maintenance of chromosomes element 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z541_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 5.410e-17
Identity = 71/197 (36.04%), Postives = 102/197 (51.78%), Query Frame = 3
Query:   87 NWAKWGGNVSMVYLATPEGGGFMMGPLDKPAKERKAA-QRREKHIDDAEEITPMMEMKGSKKAKQNKDQTQMRIAKMRAHERQKEDAGSKKDMFETLINPKSFTQTVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQSTLSGDAPPAASGDAKQWLMSFTPADFRELKELYGME--ESNFDHRSEGPKSDYYDPL 668
            +WA+ G  VS      P    FM+GPLD+    R    QR++K  DD E + P+   KG K   + KD   +R A M+    +    G  ++  + ++N  SFT+TVEN+FDF+ F+K G   +++D E      +F +     DA  A S + KQ ++SFT  DF +L EL G+E  E     R     SDYYDPL
Sbjct:  105 DWAQLGHAVSACVRCVPRMD-FMLGPLDRHEVVRAVRRQRKQKPNDDFESVAPLRVKKGGK---EQKDPEHIRKAAMKDRFLE---PGCSQEFAKFIMNSSSFTETVENMFDFTDFIKHGLTGLSVDTEAGTLNAQFTRILTQDDAAAARSKN-KQAVLSFTKQDFVDLIELCGLEGQEPTIPDRRTVDGSDYYDPL 293          
BLAST of mRNA_Ecto-sp13_S_contig9689.21321.1 vs. uniprot
Match: D0NM46_PHYIT (Non-structural maintenance of chromosomes element 4 n=9 Tax=Phytophthora TaxID=4783 RepID=D0NM46_PHYIT)

HSP 1 Score: 80.9 bits (198), Expect = 1.740e-13
Identity = 61/186 (32.80%), Postives = 97/186 (52.15%), Query Frame = 3
Query:   84 FNWAKWGGNVSMVYLATPEGGGFMMGPLDKPA--KERKAAQRREKHIDDAEEITPMMEMKGSKKAKQNKDQTQMRIAKMRAHERQKEDAGSKKDMFETLINPKSFTQTVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQSTLSGDAPPAASGDAKQWLMSFTPADFRELKELYGMEESNFDHRS 635
            F+W   G      + + PE   F+ G +D     KERK A+R ++ ++ A+E  P      +KK +++    ++ I + +  E ++      K +F+ +INPKSFTQTVENLFD SF V++    I ID  + LP +K  +     + PP+      Q ++S TPA + +L  + G EE    HRS
Sbjct:  166 FDWNTLGNAAGACFRSVPESS-FLFGLMDTEVVRKERKKARRAQEDVN-AQEAQPTEYT--NKKDRKDAQARRLEILQSKLSEGERV-----KPLFDMVINPKSFTQTVENLFDTSFLVRNNSAEIGIDDGSGLPYLKNQEGLNEANLPPST-----QSIISITPAQWEQLASVTGREEPLLGHRS 337          
BLAST of mRNA_Ecto-sp13_S_contig9689.21321.1 vs. uniprot
Match: H3HE45_PHYRM (Non-structural maintenance of chromosomes element 4 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HE45_PHYRM)

HSP 1 Score: 77.0 bits (188), Expect = 8.780e-12
Identity = 57/192 (29.69%), Postives = 94/192 (48.96%), Query Frame = 3
Query:   66 EQGVETFNWAKWGGNVSMVYLATPEGGGFMMGPLDKPA--KERKAAQRREKHIDDAEEITPMMEMKGSKKAKQNKDQTQMRIAKMRAHERQKEDAGSKKDMFETLINPKSFTQTVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQSTLSGDAPPAASGDAKQWLMSFTPADFRELKELYGMEESNFDHRS 635
            E     F+W   G      + + PE   F+ G LD     KERK A+R ++ ++ A+E  P        +    KD+   +  ++   +    +   ++ +F+ ++NPKSFTQTVENLFD SF V++    + ID  T LP ++  +  +  D P +      Q ++S TPA + +L  + G +E    HRS
Sbjct:  472 ESQAGDFDWNTLGLAAGACFRSAPEIS-FLFGLLDTEVVRKERKKAKRVQEDVN-AQEAQPT-------EYTNKKDRKDAQARRLEVLQTMLNEGKRRESLFDVVVNPKSFTQTVENLFDTSFLVRNSSAEVGIDEATGLPYLENHEGMVDADMPAST-----QSIISITPAQWEQLARVTGRDEPLLGHRS 649          
BLAST of mRNA_Ecto-sp13_S_contig9689.21321.1 vs. uniprot
Match: A0A225VE20_9STRA (Non-structural maintenance of chromosomes element 4 (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VE20_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.710e-11
Identity = 49/152 (32.24%), Postives = 84/152 (55.26%), Query Frame = 3
Query:  180 KERKAAQRREKHIDDAEEITPMMEMKGSKKAKQNKDQTQMRIAKMRAHERQKEDAGSKKDMFETLINPKSFTQTVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQSTLSGDAPPAASGDAKQWLMSFTPADFRELKELYGMEESNFDHRS 635
            KERK A+R  + ++ A+E  P      +KK +++    ++ I + +  ER       +  +F+ +INPKSFTQTVENLFD SF V++    + ID +T LP +   +     + PP++     Q ++S TPA ++++  + G +E    HR+
Sbjct:    2 KERKKARRVHEDVN-AQEAQPTEYT--NKKDRKDAQARRLEILQNKMQER-----NDRHSLFDMVINPKSFTQTVENLFDTSFLVRNSSAEVGIDEDTGLPYLYNHEGREEDNLPPSS-----QSIISITPAQWQQIARMTGRDEPLLGHRT 140          
BLAST of mRNA_Ecto-sp13_S_contig9689.21321.1 vs. uniprot
Match: A0A662XMQ2_9STRA (Non-structural maintenance of chromosomes element 4 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XMQ2_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 7.360e-11
Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = 3
Query:  351 KKDMFETLINPKSFTQTVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQSTLSGDAPPAASGDAKQWLMSFTPADFRELKELYGMEESNFDHRS 635
            KK +F+ ++NPKSFTQTVENLFD SF V++G   I +D +T LP ++  +     D P  A     Q ++S TPA +++L  L   EE    HRS
Sbjct:  247 KKPLFDVVVNPKSFTQTVENLFDTSFLVRNGSMEIGVDQDTGLPYLENHEGQNDKDVPAQA-----QSIISITPAQWQQLAHLTQHEEPVLGHRS 336          
BLAST of mRNA_Ecto-sp13_S_contig9689.21321.1 vs. uniprot
Match: A0A7S1Y271_9STRA (Non-structural maintenance of chromosomes element 4 n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y271_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 9.650e-11
Identity = 69/235 (29.36%), Postives = 106/235 (45.11%), Query Frame = 3
Query:   18 FLDSIKKHFGRTKGDDEQGVETFNWAKWGGNVSMVYLATPEGGGFMMGPL--DKPAKERKAAQRREK-HIDDAEEITPMMEMKGSKKAKQNKDQTQM------RIAKMRAHERQK------------EDAGSKKDMFET---------LINPKSFTQTVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQSTLSGDAPPAASGDAKQWLMSFTPADFRELKELYGMEESNFDHR 632
            F   +K HF   +G        F+W   G   S+ +   P    F+ GPL  D   K++KA Q R+K             ++K  +++  N  + +       ++ K + H+ QK            E   ++K++ ET         L NP SFTQTVENLF FSF +K G   + +D ET L +V+     + GD    A G  +Q + S +  D+R+L + +GMEE    HR
Sbjct:   90 FQQKLKSHFSTGRGQ-------FDWLSLGKAASVCFNMPPTNVSFLSGPLQADYEPKQKKARQARKKPXXXXXXXXXXXXDVKKQERSADNLSEVEKNIKELYKVLKKKCHQEQKNQVEQIAELPEDEQQEARKELRETEGEIDGLQYLFNPNSFTQTVENLFHFSFMIKDGRASMRLDDETGL-RVRH-VGDVDGDQ--RADG-TRQTITSLSMRDWRKLTKAHGMEEGYLKHR 312          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9689.21321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G069_ECTSI9.620e-14994.83Non-structural maintenance of chromosomes element ... [more]
A0A6H5JPS6_9PHAE1.080e-7298.23Non-structural maintenance of chromosomes element ... [more]
A0A6H5JT36_9PHAE1.920e-6096.19Non-structural maintenance of chromosomes element ... [more]
A0A835YSI9_9STRA4.810e-1735.75Non-structural maintenance of chromosomes element ... [more]
A0A835Z541_9STRA5.410e-1736.04Non-structural maintenance of chromosomes element ... [more]
D0NM46_PHYIT1.740e-1332.80Non-structural maintenance of chromosomes element ... [more]
H3HE45_PHYRM8.780e-1229.69Non-structural maintenance of chromosomes element ... [more]
A0A225VE20_9STRA4.710e-1132.24Non-structural maintenance of chromosomes element ... [more]
A0A662XMQ2_9STRA7.360e-1143.16Non-structural maintenance of chromosomes element ... [more]
A0A7S1Y271_9STRA9.650e-1129.36Non-structural maintenance of chromosomes element ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9689contigEcto-sp13_S_contig9689:729..5871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score361.7
Seed ortholog evalue2.2e-97
Seed eggNOG ortholog2880.D7G069
Model size1035
Hectar predicted targeting categoryother localisation
GOsGO:0000793,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0030915,GO:0032991,GO:0033554,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0106068,GO:1901360,GO:1902494,GO:1990234
Exons7
EggNOG free text desc.DNA repair
EggNOG OGsCOG5125@1,KOG2866@2759
Cds size585
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9689.21321.1prot_Ecto-sp13_S_contig9689.21321.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9689 1453..5537 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464232.0393195-UTR-Ecto-sp13_S_contig9689:728..8321681464232.0393195-UTR-Ecto-sp13_S_contig9689:728..832Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9689 729..832 +
1681464232.052911-UTR-Ecto-sp13_S_contig9689:1440..14521681464232.052911-UTR-Ecto-sp13_S_contig9689:1440..1452Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9689 1441..1452 +
1681464232.1571145-UTR-Ecto-sp13_S_contig9689:5537..58711681464232.1571145-UTR-Ecto-sp13_S_contig9689:5537..5871Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9689 5538..5871 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464232.0728009-CDS-Ecto-sp13_S_contig9689:1452..15541681464232.0728009-CDS-Ecto-sp13_S_contig9689:1452..1554Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9689 1453..1554 +
1681464232.088101-CDS-Ecto-sp13_S_contig9689:2230..23291681464232.088101-CDS-Ecto-sp13_S_contig9689:2230..2329Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9689 2231..2329 +
1681464232.099415-CDS-Ecto-sp13_S_contig9689:2651..27321681464232.099415-CDS-Ecto-sp13_S_contig9689:2651..2732Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9689 2652..2732 +
1681464232.1180463-CDS-Ecto-sp13_S_contig9689:3710..37791681464232.1180463-CDS-Ecto-sp13_S_contig9689:3710..3779Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9689 3711..3779 +
1681464232.1312144-CDS-Ecto-sp13_S_contig9689:4485..45911681464232.1312144-CDS-Ecto-sp13_S_contig9689:4485..4591Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9689 4486..4591 +
1681464232.1457267-CDS-Ecto-sp13_S_contig9689:5409..55371681464232.1457267-CDS-Ecto-sp13_S_contig9689:5409..5537Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9689 5410..5537 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9689.21321.1

>prot_Ecto-sp13_S_contig9689.21321.1 ID=prot_Ecto-sp13_S_contig9689.21321.1|Name=mRNA_Ecto-sp13_S_contig9689.21321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=195bp
MVYLATPEGGGFMMGPLDKPAKERKAAQRREKHIDDAEEITPMMEMKGSK
KAKQNKDQTQMRIAKMRAHERQKEDAGSKKDMFETLINPKSFTQTVENLF
DFSFFVKSGEGHITIDPETKLPQVKFDQSTLSGDAPPAASGDAKQWLMSF
TPADFRELKELYGMEESNFDHRSEGPKSDYYDPLTHGNRESNRQ*
back to top

mRNA from alignment at Ecto-sp13_S_contig9689:729..5871+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9689.21321.1 ID=mRNA_Ecto-sp13_S_contig9689.21321.1|Name=mRNA_Ecto-sp13_S_contig9689.21321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5143bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9689:729..5871+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCATCGACGGAGACGCGTTCCTTGACAGCATCAAGAAGCACTTCGGCAGG ACGAAAGGAGACGATGAACAGGGAGTGGAAACGTTCAACTGGGCAAAGTG GGGGGTGAGAAGAGAAACAGAGGCATAGTCTTTTTTTTTATTGTCAAGAT TTTTTCTTCGTGCGTGCACACATTCTCTCGTTTTTTTTTGTGTGGCGTCA ATCTGTTGTGTTCGTGTGCGGCATGGCGATTTCTCCACGACTAACTCTGT GTATTCGATGTGCTGGTTTGGCTCCTGTTTCGTTCCTCTGTCGTATGGGT ACGTTCGTGTAAATGTTGTGTCTGTTTTTTGGTGGTGCATGTTGTGCTCG GTACTGCTGTACTCCTCCCCATTTTTTTTTTTATCTGCAGTTTCCTACAA AGCACCCACCTCGCCATTTGTCCATGCACATGCACACACGAGCTCTTTGC TTCCTCCCTGTCGGACACGTACACAATGCCACGTAGACTCTGATTGCCTT TTTTTTTTTTCTTAGTATGACCCATCGAGTCCATAACTAAGAACTGAGTC TAGGATAGGTTAGCAATTTATCCATAGCGTCAGCGAAGACGCTTACCTGT ATTCCCACGATTTCCCGAGCAGCACACAGTGACATCTCCCCTTCGGGAAA CGGGCCGTGTCGTGCATCTAACTGTATGTTTGTCTGTCTTCTTTTTTTCC TCACTCTTTTAGGGCAACGTCTCGATGGTGTACCTCGCCACCCCCGAGGG GGGCGGGTTTATGATGGGTCCCCTGGACAAGCCAGCGAAGGAGAGGAAGG CTGCTCAAAGGAGGGAGAAGCACATCGTGAGTGCGCTTGTCTCTTGCCAC ACCTGGAGGAGACGATGCAAGCTATGTGCTAAAAATGAGACGGAAGAACC TAAGTACAAAGCGATGCCCCTTGAAGTTGATTGGCGTTTGTGCGCTGTGG TTGTTGTTGCTGTTCATGGGGCCTCTCGGAAACAGACAGCGTGCTTGACA CAATCTGCACGGCATGTGGTCGCAGATACAGCAACAGATGATACATGACA CAGACTACATGGTACGTGGGTGGTGCACGTGTGTACAGCGTGTTAATTTG GTCACTCCTCTACGCGCACGGTTTGATTCCCGCAACACAAGCCTGCCGGT TGCACGGTTTCACCCGCGAAGATTCCGTGAAGATTGCCAGCCACCGGGTG CCTTGCTTCCGTAACACAGTGTCCCACCTATTTTGAAAATATACGTACAA ACACGGAGGGTCCGTCCGAGATATAGCCATTTTCAAAGGGGAATGTGCTT TGTTTGTTAATCGTGGGTGCACGAACATCCGGCTGGATACTCGGCTTATT CTGTTTAAGCCTTTTCACTGAATTTACATGTGATGCCAGCTGGGGCTATG CACAAAGTCCCACCTAATGCTCAGCGTTTCATCTTTTGCTTATAAAGGTT CGTCCTTTGCTTCTTAAGCTTGTGCTTTACGTTATCAATAACTGGTGTGC AGGACGACGCCGAGGAGATTACTCCGATGATGGAGATGAAGGGCAGCAAG AAGGCCAAGCAGAACAAGGACCAGACGCAGATGCGCATCGCCAAGATGAG GGTGAGGAAAGAAAGAACCAAAACGTCTTCTATCAAAGAGGACCAGTCAG CAAGTTGAGGTTGAGAAATGAGAGAAAGGTTTCGCCCAGTTGCTAAAGCT TTTCTAAAATAAATATCATAGTGTGATAGATCCCTGTTTTTGTTTTTTTT GACAAGGAATGATGGCAGCGGTTGAAAGGTGAACGAAATCGTGAAGCGCT GCAGTCCGGGACAGAGTTTGATCTCCATCACCCCAACTGATATTCAACAA ACCCGCACTGCTTTGTTGTTCTGTCTGTCTTTTCTCCCTTCCTCTTGTTT TGGTGTGCGTGCGTGTGTGACAGGCGCACGAGAGACAGAAGGAGGACGCG GGGTCCAAGAAAGACATGTTCGAGACTCTCATCAACCCCAAGTCCTTCAC GCAGGTCTGTATGTTTCTTCATTATTCGCATCGATCGCGCTAACTATAAT CCGCCGACCAATGAAAGTACGTCATCCAGTCTCGGTGCGACTGAAAACAG AAATATGCATCCAAAGACTGTGATGATGTGGGACAAACCCTTGAGGGGGC GTTATGAAGAGGGCTACTCTGCTCTCCGGGCCAAAGACAGAAACGGTGGC GAACGAAGAAAAGGCACGTGTGTGCATGTGTGTTTTTTTATTAGCATCGA CGGCGCTATGCTGATGACCGATGAAAATACGTCAGTCTCATTGCGGTGGA AAACACACATACTTCTGTAGGCCACGATCTGGGACCTTGTGACCGAGTGT CATGGGGGAGTCGACGCTTTTCTCCGGATAAACACATTCCGTAGCAACAA CAGAAGAGAAACTTGTATGTGTGTGTTTGCGTCGACCCCTTTCGAACCGT TAGCTGACCAAGAAAAGCGTCGTCTGAACTGGGTGCATGTGGGGACCATT GATGAGAGAACTTTCAATATAGCAGGAACCCAGTGTTTTTGCGGTTGACA ACACTATTTTCTTCTAGGGAGGTTTCGAGCTACCTACGGTTGGACTGCAC GATCTGGCTTTGGCAACCACATGCCGGTGATAATAATTTCGCTCCGCGTG TCATGGAAAAGCCTTGCCAAGGTGTGGCGGGCAATTGTTTATTTTGTTGA GGATGTGATCTATCGTGGACGTGCAGCATCTCATTCAAACCAACGTACTC GGAGGTAAGACAATTTTGTGTTTAGTCCTGAACCGGATTTCCTGGGTGTG TGCGAGGTCTGTGGTGGAAATTCCACGGCAAGCATGCCCCCCCCCCTCCC CCGCTGTCTCGAGAATGACGTGTGATGTCCTTGGTCAATCTAGTCAATCG ATGTTTTAAGAGTTGAGCGCTGCTGAATGAGTTCCGCGCCCCCCCACCCG TACCGTCTTGCTATCTGTCGGCTTTTACCCAGACGGTGGAAAACTTGTTC GACTTCTCATTCTTCGTCAAGAGCGGGGAGGGCCACATCACCATCGATCC GGTGAGTTAATGCTTCGGGGGTTGAGCTGGCTCGCAAACCCAAGGAGGGC ATACTGTATCGACACACTGCTGTATTTGTCGAACAACAAAGGGGGATGCA TGCAGGCGTTGTGTAACGCGCTTGTGATACTGCTAGAAGTTACTGCACAC ACAATCACCTTCGCAGTACTCTGCTGGTGTAAAGGGGAACAAGGTGGTGT TCCGAGTGGCTTTGCGTTTTTGGGATGTTTCTAGATACTAGCCTCTTCCT GATGAAAATTGAGGTGTGACTTCCGTTCTCTCTTCAAAAGAAGGCTGGTC ATGCGAAATACGACGTAAAAAGTCGGAATCGTTCTCTTTGGGTGCCTCAA ATCCGTTTTTTTGTTTCGGGGCCAAGCTCCAGGTTGACTTGAAGGCGTGT CCGTCCGCAGATTACGATGCAGTATGCACGAGGCACTCGCTCGTCAAGGT GATCGGCCATAAGAATATGACAAGTGCATTTCGAGGCTGGGATATGCTTC TTATCCCCACAAGTGCTGCGTGTTGCCGACGCTGTTTCGATTTAGGCATC TCATGATGGGAATTGTGTCCCTTTTGTCTGAGATAGCGTGGTTTCATGGT CGCGAATCTTCGACATTGAACAGGCAATAAATGAGGGTGTCGCGCCCCCC CCCCCCCTCCCCCACGCGCCCATCTTTGTACCTACGGCCGCCACCATCGC TTTCCAGGAGACCAAGCTTCCACAGGTCAAGTTCGACCAGAGCACTCTGA GTGGAGACGCCCCACCCGCCGCTTCGGGCGATGCGAAGCAGTGGTTGATG TCCTTCACGCCAGGTACTAACCTACCTACCGTTAGGTTAACAACGTGATG TTGATGTTGTTCTGCGAGTGTACCTGCTCCTCGCCTTCTTTGATGGGGTG TCCATTGCCGTCAAGAGCGTCCCCTGTCTAAAGGTACTCTCTGGTAGCTG GAGTTGACCCGCTCACAAACATGCGTTAACGGTTGTTTTGTGTTTGGGTG CGGTAGCTCGTCAGAGGCCGAAAGAGAAAGAAGGTTGACTCGAGACTTTC GATGTTTAGAGAGTGAGAGACATGCGGTAGGCAATACCATCGCCATGCAG CATGTCCATCAACACATACCATCCGCGTATCCCCCGGAGGCCCCGTAGAC AGTATACTCTGCCGAGCACCCCAAACAAAAGAGCGTGAGGCGTTCGCATG CTCGGCGTTAGGGGTTCAGCATACAGCAGTGGGGGGGGGTGTCTAACGCC GGTTGACTAGCGCTGGTGACCCTGAAGAGCGCTGGTGAAATCGATGGGCA GGGGCTGCATCACCAAGTCATTATTTCTGTACATTGAATAGCGCCGGTCG ATGCGCCGAGCACACACCGGCGGTTTATAGAGCCCCCCCCCCCCTCACTG TACTAATATTGCGAGTCTCTTGTCGGCCATCAAGTGCCTCCATCCACTGG TTGCCTCCATCGACGTTGGATAATCCCAGCATGCTTGGGAAATAGATACA AACGCTGAGTTCTCAAAGAAAACCTCGCGCCGTTTCTGCTCCAAGAATCG CACAAGGGTTACCCCCCCCCCCTCTCCGAGGCACCAACGCGTTGTCCACT GTTTTTCTGTCCGTCAATCCGATTGTCGCAGCTGACTTCCGCGAGCTCAA GGAACTCTACGGCATGGAGGAGTCCAACTTCGATCACCGCAGCGAGGGGC CCAAGTCAGACTACTACGACCCTCTCACGCATGGCAACCGCGAATCGAAC CGCCAGTAAGCTTTGGCCGTTCATCTAACACGGTTTGTTTTTGGCTCTGG TTCATGCAAGCTGCGTGCGCCATGGCAAGTTTATTCGACAAAGCCGTGAG GTTGCTCAACATGTGGCTGGAACCAGGGAGCGATGCTGGCGGCATCTTGG GGTCATGGTGCATTGTGCTGAATACACAGCAGTGGTACGGTGGTCTTGGT AGTTAGCTTGAGTTATCTTCTCTTTGTTGTCTCCTTTTTGTCTCCGGTTG ACTGTTGTTCATGTTGTCATTTCATTGAAGTGTAATTAGCCCCCATCCAT GTAGGGTTCCTTCATAGGTTAAGCCACAGTCGCGTATGGGAGG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9689:729..5871+

>mRNA_Ecto-sp13_S_contig9689.21321.1 ID=mRNA_Ecto-sp13_S_contig9689.21321.1|Name=mRNA_Ecto-sp13_S_contig9689.21321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=585bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9689:729..5871+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGTACCTCGCCACCCCCGAGGGGGGCGGGTTTATGATGGGTCCCCT
GGACAAGCCAGCGAAGGAGAGGAAGGCTGCTCAAAGGAGGGAGAAGCACA
TCGACGACGCCGAGGAGATTACTCCGATGATGGAGATGAAGGGCAGCAAG
AAGGCCAAGCAGAACAAGGACCAGACGCAGATGCGCATCGCCAAGATGAG
GGCGCACGAGAGACAGAAGGAGGACGCGGGGTCCAAGAAAGACATGTTCG
AGACTCTCATCAACCCCAAGTCCTTCACGCAGACGGTGGAAAACTTGTTC
GACTTCTCATTCTTCGTCAAGAGCGGGGAGGGCCACATCACCATCGATCC
GGAGACCAAGCTTCCACAGGTCAAGTTCGACCAGAGCACTCTGAGTGGAG
ACGCCCCACCCGCCGCTTCGGGCGATGCGAAGCAGTGGTTGATGTCCTTC
ACGCCAGCTGACTTCCGCGAGCTCAAGGAACTCTACGGCATGGAGGAGTC
CAACTTCGATCACCGCAGCGAGGGGCCCAAGTCAGACTACTACGACCCTC
TCACGCATGGCAACCGCGAATCGAACCGCCAGTAA
back to top