mRNA_Ecto-sp13_S_contig9689.21321.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9689.21321.1 vs. uniprot
Match: D7G069_ECTSI (Non-structural maintenance of chromosomes element 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G069_ECTSI) HSP 1 Score: 435 bits (1119), Expect = 9.620e-149 Identity = 220/232 (94.83%), Postives = 223/232 (96.12%), Query Frame = 3
Query: 3 IDGDAFLDSIKKHFGRTKGDDEQGVETFNWAKWGGNVSMVYLATPEGGGFMMGPLDKPAKERKAAQRREKHIDDAEEITPMMEMKGSKKAKQNKDQTQMRIAKMRAHERQKEDAGSKKDMFETLINPKSFTQTVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQSTLSGDAPPAASGDAKQWLMSFTPADFRELKELYGMEESNFDHRSEGPKSDYYDPLTHGNRESNRQ 698
IDGDAFLDSIKKHFGRTKGDDEQGV+TFNWAKWGGNVSMVYLATPEGGGFMMGPLDKP KERK AQRREKHIDDAEEITPMMEMKG KKAKQNKDQTQMRIAKMR HE KEDAGSKKDMFETL+NPKSFTQTVENLFDFSFFVK GEGHITIDPETKLPQVKFD ST SGDAPPAASGDAKQWLMSFTPADFRELKELYGMEESNF+HRSEGPKSDYYDPLTHGNRESNRQ
Sbjct: 217 IDGDAFLDSIKKHFGRTKGDDEQGVKTFNWAKWGGNVSMVYLATPEGGGFMMGPLDKPVKERKTAQRREKHIDDAEEITPMMEMKG-KKAKQNKDQTQMRIAKMREHE--KEDAGSKKDMFETLVNPKSFTQTVENLFDFSFFVKRGEGHITIDPETKLPQVKFDPSTQSGDAPPAASGDAKQWLMSFTPADFRELKELYGMEESNFEHRSEGPKSDYYDPLTHGNRESNRQ 445
BLAST of mRNA_Ecto-sp13_S_contig9689.21321.1 vs. uniprot
Match: A0A6H5JPS6_9PHAE (Non-structural maintenance of chromosomes element 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPS6_9PHAE) HSP 1 Score: 229 bits (585), Expect = 1.080e-72 Identity = 111/113 (98.23%), Postives = 112/113 (99.12%), Query Frame = 3
Query: 360 MFETLINPKSFTQTVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQSTLSGDAPPAASGDAKQWLMSFTPADFRELKELYGMEESNFDHRSEGPKSDYYDPLTHGNRESNRQ 698
MFETLINPKSFTQTVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQST SGDAPPAASGDAKQWLMSFTPADFRELKELYGMEESNF+HRSEGPKSDYYDPLTHGNRESNRQ
Sbjct: 1 MFETLINPKSFTQTVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQSTPSGDAPPAASGDAKQWLMSFTPADFRELKELYGMEESNFEHRSEGPKSDYYDPLTHGNRESNRQ 113
BLAST of mRNA_Ecto-sp13_S_contig9689.21321.1 vs. uniprot
Match: A0A6H5JT36_9PHAE (Non-structural maintenance of chromosomes element 4 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT36_9PHAE) HSP 1 Score: 203 bits (516), Expect = 1.920e-60 Identity = 101/105 (96.19%), Postives = 103/105 (98.10%), Query Frame = 3
Query: 3 IDGDAFLDSIKKHFGRTKGDDEQGVETFNWAKWGGNVSMVYLATPEGGGFMMGPLDKPAKERKAAQRREKHIDDAEEITPMMEMKGSKKAKQNKDQTQMRIAKMR 317
IDGDAFLDSIKKHFGRTKGDDEQGV+TFNWAKWG NVSMV+LA PEGGGFMMGPLDKPAKERKAAQRREKHIDDAEEITPMMEMKGSKKAKQNKDQTQMRIAKMR
Sbjct: 118 IDGDAFLDSIKKHFGRTKGDDEQGVQTFNWAKWGSNVSMVFLAAPEGGGFMMGPLDKPAKERKAAQRREKHIDDAEEITPMMEMKGSKKAKQNKDQTQMRIAKMR 222
BLAST of mRNA_Ecto-sp13_S_contig9689.21321.1 vs. uniprot
Match: A0A835YSI9_9STRA (Non-structural maintenance of chromosomes element 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSI9_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 4.810e-17 Identity = 74/207 (35.75%), Postives = 106/207 (51.21%), Query Frame = 3
Query: 87 NWAKWGGNVSMVYLATPEGGGFMMGPLDKPAKER---------KAAQR--REKHIDDAEEITPMMEMKGSKKAKQNKDQTQMRIAKMRAHERQKEDAGSKKDMFETLINPKSFTQTVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQSTLSGDAPPAASGDAKQWLMSFTPADFRELKELYGME--ESNFDHRSEGPKSDYYDPL 668
+WA G VS P M+GPLDKP +A QR ++K D+ E + P+ +G K+A+Q KD Q+R M+ + G + + ++NP SFTQTVEN+FDF+F++K+G + +D E +F + DA A+ KQ ++SFT DF+ L EL G+E E R G SDYYDPL
Sbjct: 167 DWAMIGHAVSPCIRCIPRMD-LMLGPLDKPKYXXXXXXXXXVVRAVQRERKQKPKDNFERVVPITVKEGGKEAEQ-KDPQQIRQTAMKDRFLE---PGRSAEFAKFIMNPNSFTQTVENMFDFTFYIKNGLTGLAVDKEAGKLNTQFTRILSQDDA--ASRSSNKQSVLSFTRQDFKNLIELCGLEGQEPMIPARPMGAGSDYYDPL 366
BLAST of mRNA_Ecto-sp13_S_contig9689.21321.1 vs. uniprot
Match: A0A835Z541_9STRA (Non-structural maintenance of chromosomes element 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z541_9STRA) HSP 1 Score: 90.5 bits (223), Expect = 5.410e-17 Identity = 71/197 (36.04%), Postives = 102/197 (51.78%), Query Frame = 3
Query: 87 NWAKWGGNVSMVYLATPEGGGFMMGPLDKPAKERKAA-QRREKHIDDAEEITPMMEMKGSKKAKQNKDQTQMRIAKMRAHERQKEDAGSKKDMFETLINPKSFTQTVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQSTLSGDAPPAASGDAKQWLMSFTPADFRELKELYGME--ESNFDHRSEGPKSDYYDPL 668
+WA+ G VS P FM+GPLD+ R QR++K DD E + P+ KG K + KD +R A M+ + G ++ + ++N SFT+TVEN+FDF+ F+K G +++D E +F + DA A S + KQ ++SFT DF +L EL G+E E R SDYYDPL
Sbjct: 105 DWAQLGHAVSACVRCVPRMD-FMLGPLDRHEVVRAVRRQRKQKPNDDFESVAPLRVKKGGK---EQKDPEHIRKAAMKDRFLE---PGCSQEFAKFIMNSSSFTETVENMFDFTDFIKHGLTGLSVDTEAGTLNAQFTRILTQDDAAAARSKN-KQAVLSFTKQDFVDLIELCGLEGQEPTIPDRRTVDGSDYYDPL 293
BLAST of mRNA_Ecto-sp13_S_contig9689.21321.1 vs. uniprot
Match: D0NM46_PHYIT (Non-structural maintenance of chromosomes element 4 n=9 Tax=Phytophthora TaxID=4783 RepID=D0NM46_PHYIT) HSP 1 Score: 80.9 bits (198), Expect = 1.740e-13 Identity = 61/186 (32.80%), Postives = 97/186 (52.15%), Query Frame = 3
Query: 84 FNWAKWGGNVSMVYLATPEGGGFMMGPLDKPA--KERKAAQRREKHIDDAEEITPMMEMKGSKKAKQNKDQTQMRIAKMRAHERQKEDAGSKKDMFETLINPKSFTQTVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQSTLSGDAPPAASGDAKQWLMSFTPADFRELKELYGMEESNFDHRS 635
F+W G + + PE F+ G +D KERK A+R ++ ++ A+E P +KK +++ ++ I + + E ++ K +F+ +INPKSFTQTVENLFD SF V++ I ID + LP +K + + PP+ Q ++S TPA + +L + G EE HRS
Sbjct: 166 FDWNTLGNAAGACFRSVPESS-FLFGLMDTEVVRKERKKARRAQEDVN-AQEAQPTEYT--NKKDRKDAQARRLEILQSKLSEGERV-----KPLFDMVINPKSFTQTVENLFDTSFLVRNNSAEIGIDDGSGLPYLKNQEGLNEANLPPST-----QSIISITPAQWEQLASVTGREEPLLGHRS 337
BLAST of mRNA_Ecto-sp13_S_contig9689.21321.1 vs. uniprot
Match: H3HE45_PHYRM (Non-structural maintenance of chromosomes element 4 n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HE45_PHYRM) HSP 1 Score: 77.0 bits (188), Expect = 8.780e-12 Identity = 57/192 (29.69%), Postives = 94/192 (48.96%), Query Frame = 3
Query: 66 EQGVETFNWAKWGGNVSMVYLATPEGGGFMMGPLDKPA--KERKAAQRREKHIDDAEEITPMMEMKGSKKAKQNKDQTQMRIAKMRAHERQKEDAGSKKDMFETLINPKSFTQTVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQSTLSGDAPPAASGDAKQWLMSFTPADFRELKELYGMEESNFDHRS 635
E F+W G + + PE F+ G LD KERK A+R ++ ++ A+E P + KD+ + ++ + + ++ +F+ ++NPKSFTQTVENLFD SF V++ + ID T LP ++ + + D P + Q ++S TPA + +L + G +E HRS
Sbjct: 472 ESQAGDFDWNTLGLAAGACFRSAPEIS-FLFGLLDTEVVRKERKKAKRVQEDVN-AQEAQPT-------EYTNKKDRKDAQARRLEVLQTMLNEGKRRESLFDVVVNPKSFTQTVENLFDTSFLVRNSSAEVGIDEATGLPYLENHEGMVDADMPAST-----QSIISITPAQWEQLARVTGRDEPLLGHRS 649
BLAST of mRNA_Ecto-sp13_S_contig9689.21321.1 vs. uniprot
Match: A0A225VE20_9STRA (Non-structural maintenance of chromosomes element 4 (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VE20_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 4.710e-11 Identity = 49/152 (32.24%), Postives = 84/152 (55.26%), Query Frame = 3
Query: 180 KERKAAQRREKHIDDAEEITPMMEMKGSKKAKQNKDQTQMRIAKMRAHERQKEDAGSKKDMFETLINPKSFTQTVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQSTLSGDAPPAASGDAKQWLMSFTPADFRELKELYGMEESNFDHRS 635
KERK A+R + ++ A+E P +KK +++ ++ I + + ER + +F+ +INPKSFTQTVENLFD SF V++ + ID +T LP + + + PP++ Q ++S TPA ++++ + G +E HR+
Sbjct: 2 KERKKARRVHEDVN-AQEAQPTEYT--NKKDRKDAQARRLEILQNKMQER-----NDRHSLFDMVINPKSFTQTVENLFDTSFLVRNSSAEVGIDEDTGLPYLYNHEGREEDNLPPSS-----QSIISITPAQWQQIARMTGRDEPLLGHRT 140
BLAST of mRNA_Ecto-sp13_S_contig9689.21321.1 vs. uniprot
Match: A0A662XMQ2_9STRA (Non-structural maintenance of chromosomes element 4 n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XMQ2_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 7.360e-11 Identity = 41/95 (43.16%), Postives = 57/95 (60.00%), Query Frame = 3
Query: 351 KKDMFETLINPKSFTQTVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQSTLSGDAPPAASGDAKQWLMSFTPADFRELKELYGMEESNFDHRS 635
KK +F+ ++NPKSFTQTVENLFD SF V++G I +D +T LP ++ + D P A Q ++S TPA +++L L EE HRS
Sbjct: 247 KKPLFDVVVNPKSFTQTVENLFDTSFLVRNGSMEIGVDQDTGLPYLENHEGQNDKDVPAQA-----QSIISITPAQWQQLAHLTQHEEPVLGHRS 336
BLAST of mRNA_Ecto-sp13_S_contig9689.21321.1 vs. uniprot
Match: A0A7S1Y271_9STRA (Non-structural maintenance of chromosomes element 4 n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y271_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 9.650e-11 Identity = 69/235 (29.36%), Postives = 106/235 (45.11%), Query Frame = 3
Query: 18 FLDSIKKHFGRTKGDDEQGVETFNWAKWGGNVSMVYLATPEGGGFMMGPL--DKPAKERKAAQRREK-HIDDAEEITPMMEMKGSKKAKQNKDQTQM------RIAKMRAHERQK------------EDAGSKKDMFET---------LINPKSFTQTVENLFDFSFFVKSGEGHITIDPETKLPQVKFDQSTLSGDAPPAASGDAKQWLMSFTPADFRELKELYGMEESNFDHR 632
F +K HF +G F+W G S+ + P F+ GPL D K++KA Q R+K ++K +++ N + + ++ K + H+ QK E ++K++ ET L NP SFTQTVENLF FSF +K G + +D ET L +V+ + GD A G +Q + S + D+R+L + +GMEE HR
Sbjct: 90 FQQKLKSHFSTGRGQ-------FDWLSLGKAASVCFNMPPTNVSFLSGPLQADYEPKQKKARQARKKPXXXXXXXXXXXXDVKKQERSADNLSEVEKNIKELYKVLKKKCHQEQKNQVEQIAELPEDEQQEARKELRETEGEIDGLQYLFNPNSFTQTVENLFHFSFMIKDGRASMRLDDETGL-RVRH-VGDVDGDQ--RADG-TRQTITSLSMRDWRKLTKAHGMEEGYLKHR 312 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9689.21321.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9689.21321.1 >prot_Ecto-sp13_S_contig9689.21321.1 ID=prot_Ecto-sp13_S_contig9689.21321.1|Name=mRNA_Ecto-sp13_S_contig9689.21321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=195bp MVYLATPEGGGFMMGPLDKPAKERKAAQRREKHIDDAEEITPMMEMKGSKback to top mRNA from alignment at Ecto-sp13_S_contig9689:729..5871+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9689.21321.1 ID=mRNA_Ecto-sp13_S_contig9689.21321.1|Name=mRNA_Ecto-sp13_S_contig9689.21321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5143bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9689:729..5871+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9689:729..5871+ >mRNA_Ecto-sp13_S_contig9689.21321.1 ID=mRNA_Ecto-sp13_S_contig9689.21321.1|Name=mRNA_Ecto-sp13_S_contig9689.21321.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=585bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9689:729..5871+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |