mRNA_Ecto-sp13_S_contig9684.21317.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9684.21317.1
Unique NamemRNA_Ecto-sp13_S_contig9684.21317.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9684.21317.1 vs. uniprot
Match: D8LNH9_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNH9_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 8.840e-63
Identity = 96/108 (88.89%), Postives = 98/108 (90.74%), Query Frame = 1 
Query:    1 LSPQRSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYEASLSLHTMLFVDMRNGALRVLEEKGIDMEPVL 324
            +SPQRSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYE          VDMRNGAL+VLEEKGIDMEPVL
Sbjct:    1 MSPQRSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYE----------VDMRNGALKVLEEKGIDMEPVL 98
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BLAST of mRNA_Ecto-sp13_S_contig9684.21317.1 vs. uniprot
Match: A0A6H5K175_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K175_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 1.770e-55
Identity = 96/106 (90.57%), Postives = 98/106 (92.45%), Query Frame = 1 
Query:    7 PQRSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYEASLSLHTMLFVDMRNGALRVLEEKGIDMEPVL 324
            P+RSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYEA       + VDMRNGALRVLEEKGIDMEPVL
Sbjct:  856 PERSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYEA-------IEVDMRNGALRVLEEKGIDMEPVL 954
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BLAST of mRNA_Ecto-sp13_S_contig9684.21317.1 vs. uniprot
Match: A0A6H5LC05_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC05_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 4.030e-46
Identity = 80/104 (76.92%), Postives = 86/104 (82.69%), Query Frame = 1 
Query:    7 PQRSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYEASLSLHTMLFVDMRNGALRVLEEKGIDMEP 318
            P+RS HL+LLSWPRWFDWI+RFIRPL+SESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYE          V MRN  + VLEE  + MEP
Sbjct:  523 PERSAHLMLLSWPRWFDWIYRFIRPLISESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYE----------VAMRNSVVTVLEENDVAMEP 616
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BLAST of mRNA_Ecto-sp13_S_contig9684.21317.1 vs. uniprot
Match: D7G352_ECTSI (Phosphatidylinositol transfer protein SEC14 and related proteins n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G352_ECTSI)

HSP 1 Score: 153 bits (386), Expect = 8.370e-43
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 1 
Query:   10 QRSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYEA 231
            QRS HLLLLSWPRWFDWI+RFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYE+
Sbjct:  298 QRSAHLLLLSWPRWFDWIYRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYES 371
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BLAST of mRNA_Ecto-sp13_S_contig9684.21317.1 vs. uniprot
Match: D8LL64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL64_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.150e-20
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:  109 MTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYE 228
            MTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYE
Sbjct:    1 MTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYE 40
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BLAST of mRNA_Ecto-sp13_S_contig9684.21317.1 vs. uniprot
Match: A0A7S1UMG2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UMG2_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.630e-8
Identity = 36/78 (46.15%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:    7 PQRSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSK-IDNDQIPKEYGGASEYALGEHPYEASL 237
            P       L++ P W    F   R +L ES K  + S    S   T L K ID++QIPKEYGG+S+YALGEHPYE  L
Sbjct:  528 PMAMKRAFLVNSPWWLAGAFSGFRSILPESVKVDILS---ESQSVTALRKFIDDNQIPKEYGGSSQYALGEHPYEVGL 602
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BLAST of mRNA_Ecto-sp13_S_contig9684.21317.1 vs. uniprot
Match: A0A7S1ZXQ5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZXQ5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.760e-6
Identity = 27/65 (41.54%), Postives = 35/65 (53.85%), Query Frame = 1 
Query:   43 PRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLLSKIDNDQIPKEYGGASEYALGEHPYEASL 237
            P W    + +    L ES    M S + ++    L   +D+DQIPKEYGG+S Y LGEHP E  L
Sbjct:  297 PFWLAGSYSYANRFLPESVAVSMMSSSKSAAEGGLRDFVDDDQIPKEYGGSSPYKLGEHPLEIEL 361
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BLAST of mRNA_Ecto-sp13_S_contig9684.21317.1 vs. uniprot
Match: A0A7S1DB15_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DB15_CYCTE)

HSP 1 Score: 51.2 bits (121), Expect = 3.720e-5
Identity = 21/27 (77.78%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:  157 IDNDQIPKEYGGASEYALGEHPYEASL 237
            ID+DQIPK+YGG+S YALGEHPYE  L
Sbjct:   17 IDDDQIPKQYGGSSPYALGEHPYEKDL 43
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BLAST of mRNA_Ecto-sp13_S_contig9684.21317.1 vs. uniprot
Match: B8CAC2_THAPS (Phosphatidylinositol/phosphatidylcholine transfer protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CAC2_THAPS)

HSP 1 Score: 50.4 bits (119), Expect = 6.640e-5
Identity = 28/81 (34.57%), Postives = 45/81 (55.56%), Query Frame = 1 
Query:    7 PQRSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTAN----SVYETLLSKIDNDQIPKEYGGASEYALGEHPYEASL 237
            P+R+  + +L+ P +F  I+R I+PL+   T  K+     N    ++ + L+ +I    IP+EYGG S+Y LG  P E  L
Sbjct:  239 PERAGTIYILNSPPFFQVIWRMIKPLVDPVTLDKVRVVQNNQGHFAIRDALMERIPIQNIPREYGGESQYMLGGAPEEQLL 319
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9684.21317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LNH9_ECTSI8.840e-6388.89CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K175_9PHAE1.770e-5590.57CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LC05_9PHAE4.030e-4676.92CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
D7G352_ECTSI8.370e-4395.95Phosphatidylinositol transfer protein SEC14 and re... [more]
D8LL64_ECTSI1.150e-20100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1UMG2_9STRA1.630e-846.15Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A7S1ZXQ5_9STRA1.760e-641.54Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1DB15_CYCTE3.720e-577.78Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
B8CAC2_THAPS6.640e-534.57Phosphatidylinositol/phosphatidylcholine transfer ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9684contigEcto-sp13_S_contig9684:1401..3300 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score62.4
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog157072.XP_008860830.1
Model size327
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
Ec32 ortholog descriptionCRAL-TRIO domain
Ec32 orthologEc-24_002880.1
Cds size327
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464231.8324735-CDS-Ecto-sp13_S_contig9684:1400..14691681464231.8324735-CDS-Ecto-sp13_S_contig9684:1400..1469Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9684 1401..1469 -
1681464231.852118-CDS-Ecto-sp13_S_contig9684:2500..26501681464231.852118-CDS-Ecto-sp13_S_contig9684:2500..2650Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9684 2501..2650 -
1681464231.8700197-CDS-Ecto-sp13_S_contig9684:3192..33001681464231.8700197-CDS-Ecto-sp13_S_contig9684:3192..3300Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9684 3193..3300 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9684.21317.1prot_Ecto-sp13_S_contig9684.21317.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9684 1401..3300 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9684.21317.1

>prot_Ecto-sp13_S_contig9684.21317.1 ID=prot_Ecto-sp13_S_contig9684.21317.1|Name=mRNA_Ecto-sp13_S_contig9684.21317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=109bp
LSPQRSTHLLLLSWPRWFDWIFRFIRPLLSESTKSKMTSCTANSVYETLL
SKIDNDQIPKEYGGASEYALGEHPYEASLSLHTMLFVDMRNGALRVLEEK
GIDMEPVL*
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mRNA from alignment at Ecto-sp13_S_contig9684:1401..3300-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9684.21317.1 ID=mRNA_Ecto-sp13_S_contig9684.21317.1|Name=mRNA_Ecto-sp13_S_contig9684.21317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1900bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9684:1401..3300- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTCTCCGCAGCGATCGACGCATCTGCTGCTCCTCAGCTGGCCCCGATG
GTTCGACTGGATATTCCGCTTCATCCGACCTCTCCTTTCAGAGTCCACCA
AGAGCAAGGTATTTCTTTTTTTTTGCTACAGTGTGTTGATAAAGTCTTGA
TAATCTACTTTCAGAGTCCACCAACAGCAAGGTAATTTTTTTTGTTTTTT
GTTTTATTTTTTGCTAAGGTGTTCGTAATATGCTTTCAGAGCCCACCAAG
AGCAAGGTGAACATTTTTTTTTTTGTCAAGGAGCGTTGAAAGTTTATGCA
CTCCAAGTAATATTTGTTTGGGCAGGGGCAAGCGGTAGGTCCGACCTGTC
GTTTGAGAATACATCAAAGACCAAGGTGTTTATTTTTTCTAGAATTGAAA
CTCCGTCGGGAGACATCTGTCCGAAGAGTATATCATGCTCAGCGCCTGAC
GGCAATTGCAAATATTTTTCTCCAACCCATATTTGTGCGTCTATTCGACG
CACTGCGGGGAATGCTCTCTAGCCCATGTGTTCGTGTGTATGTGTGTTCG
ACCCTCTTACAGCATGCCGTCTTGGCACCTGCCTCCCTTGCACTCCTACC
TAACCCGGCCCACTGCTCTGGCCTGGTCGTTTGTTCCACTGCTGTGTCAG
ATGACGTCTTGCACGGCGAACAGCGTGTACGAGACGCTCCTGTCGAAGAT
CGACAACGACCAGATTCCCAAGGAGTACGGAGGGGCGTCCGAGTACGCGC
TTGGGGAACACCCGTACGAGGCAAGTTTAAGTCTTCACACCATGCTCTTC
GTAGTGTATAATTCATTTTTTCCCCCCATGTAACCGTATCTATAGGACGG
TAACACGGGGTTTGTGTGACAATTCCCAAGCCGGATAGCAGAGGTAGGTC
TATCGTGTGTAAGCGGTAAAAGTGGCATGTGGCAAGTGTCATACCACACT
CGTAGTATCGTACGGTTCATCGTTCCCCCCCCATGCACTGTCAATCTATC
GGGGGGTGACACGAGAGTTACATGGTACTTACGAGGCCGGCTAGTAGAGG
GGGGAGCTTTGGAACGGTTTTGGCCTGTGCTATGATTTGTATGTTACCCA
TGCACCGCCGTGTTGGAGGGTGGATGGAGTAGTACCGCACTTGCGAGGCC
GAATACTAGAGGGGGAAGCTGTGGCTAGCAGGGTACATTTTTCCCCTTGT
CTGTGTCTATCGGCGGGTGACACGGGGATTGCACCACACTCGCGAGGCTG
GAGAGAGGCACATCTAAGTTGTCTGTGCGGTAAATGTCCAGTGGGGTGCT
TTCCCATCGTATGCTTTGGAGCCCCGGGTGGAAGTCTGAGTGAACCCACG
CCACGGGTTGCGGTATTCCAGGTTTTAGCCGTTTCAAGGCTGCTTTTCTG
TGATCTGTGTTGGACAAATACTCGCGGTAGCGCTGGCATGGTCGCGTGTT
ATCGTTAACCGAAATACGGAACTTACCCCGAAACAAGCGAAAAAATGAAA
ATCTTCGCGCGGTTGAAAACGGGAAATGCTTTCAAATGCCATGATGTGAG
ACCCCGTGAGTGCGGCGTGTGTGTGCGTCTCTTTTTTTTTTTGACAAGCT
TTTGTGTGACCTTCCGCTTGGCTGCTACGTCAAACATGGAGTACTGTTAC
ACAGAAAGGCCTGTAGACTGGCGCCAGGATAGATGGGACGAACACACACA
CACACACTCACACAGCTGTCGCACCCACCATCGATAAAAACGCAACCAAA
ATGACACTCCTCGCCTGTTGTACATAACTTCGCGTTGGTGCGATTTTTTT
TTCGTGCTGCTGCTGCTGCTGCTACTACCAGGTGGACATGAGGAACGGTG
CCCTGAGAGTTCTCGAGGAGAAGGGAATTGATATGGAGCCTGTGCTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9684:1401..3300-

>mRNA_Ecto-sp13_S_contig9684.21317.1 ID=mRNA_Ecto-sp13_S_contig9684.21317.1|Name=mRNA_Ecto-sp13_S_contig9684.21317.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=327bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9684:1401..3300- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGTCTCCGCAGCGATCGACGCATCTGCTGCTCCTCAGCTGGCCCCGATG
GTTCGACTGGATATTCCGCTTCATCCGACCTCTCCTTTCAGAGTCCACCA
AGAGCAAGATGACGTCTTGCACGGCGAACAGCGTGTACGAGACGCTCCTG
TCGAAGATCGACAACGACCAGATTCCCAAGGAGTACGGAGGGGCGTCCGA
GTACGCGCTTGGGGAACACCCGTACGAGGCAAGTTTAAGTCTTCACACCA
TGCTCTTCGTGGACATGAGGAACGGTGCCCTGAGAGTTCTCGAGGAGAAG
GGAATTGATATGGAGCCTGTGCTCTAG
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