mRNA_Ecto-sp13_S_contig9660.21290.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9660.21290.1 vs. uniprot
Match: A0A6H5LRF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LRF5_9PHAE) HSP 1 Score: 1085 bits (2806), Expect = 0.000e+0 Identity = 611/738 (82.79%), Postives = 634/738 (85.91%), Query Frame = 1
Query: 1 DGEGASVANGGGDGTKGVESNGKLWDGQATGVPNSAMEPSCHLLDRPSDAYPGAVKTIGGTVPDILQDSSWCAGDEHCVVPPATEAGNKEEAVRGXXXXXXXXXXXXXXXXXXXXXXXXXXEAAVCRGELSIPGDAGRVPDDEARALSSREGPPRHDGRFTTIAADSLADFTAAKPKEQQSRLVDGYATIATTAYPQPRPPTTTEHSSLPTAARPNVAAKRPPQQEQRGPLVKGKGANTNTRDRDTGGVEHPGATPVVHGDKRTGASDEGVRAEEPTPGRWNGHANVGHTGGSKKKGRSERELSAGTGRGGSGSEKWGGEGGVLEASTVGSKAWPSWRTFACILLLSALVLGTFLRGDMPHWLPFFGGDRRQRWAIDLDSAIAHARSRAGSFCSGRASVFSGDPADDSDLPGLISDSEEGEDSTADQGVVPGDGDGETPLMWDRRPKPDDYLVFHPVLGVVPAGVVRAWGGDGCGGWGGVRAEAAGASAXXXXXXXXXKGCGCSSESSSPRGARAPAAVSSKAIAVGGVARGKQLPPDEWPEWLAARRATVAAAVAEVEAGKE---------AAEAATTEEDAITTAPVAVEGREVNDGREVQRHGDSERTATATEARPAAASGGKAVVGVGQAVDPHHQQQPLGNASRTRPAAIGLQFEDGCVN-GGGGNSSTEGPRPLGRDDGDALSFVGGGXGSAGSCCPSEDNSIDVRAGDFSARRASLSAEQPPAMTAGYRVS 2184
D EGA ANGGGDG KGV NGKLWDGQA+G P A+EPSC+LLDRPSDAYPG VKTIGGTVP ILQDSSWCAGDE CVVPPAT AG XXXXXXXXXXXXXXXXXXXXXXXXX EAA C GE SI GDAGRVPD EARALS EGPPR DGRFTT AA SLADFT +PKEQQSRLVDGYATIAT AYPQ RPPTTTE SSLP AARP VAA+RPPQQEQRGPLVKG+GAN NTRDRDTGGV+HPGAT VVHG++RTGASDEG RAEEPTPGRWN +ANVG TGGSK++GR E ELSAGTG G SE GGEGG LE VG K+WPSWRTFACILLLSAL L TFLRG MPHWLPFFGG RRQRWA DLDSAIAHARSRAGSFCSGRASVFSGDP DDSDLPGLISDSEEGED QGVVPGD DGE PLMWDRRPKPDDYL+FHPVLGVVPAGVVRAWGGDGCGGWGGVRAEAAGA A X KGCGCSS+SSSPRGARAPAA+SSKA AVGGV +GKQLPPDEWPEWLAARRAT AAAVA+VEAGK+ AAEA TE DAITTAP AV+GREVNDGREVQR GD+ERTATATEARPAAASGGK VVGVGQ VDPHHQQQ LGNASRTRPAAIGLQFEDGCVN GGGG+SSTEGPRPLG D GDALSFVGGG GSAGS CPSEDN+IDVRAGDFSARR SLSAEQPPAMTAGYRVS
Sbjct: 99 DSEGAFSANGGGDGNKGVGRNGKLWDGQASGAPALALEPSCNLLDRPSDAYPGVVKTIGGTVPGILQDSSWCAGDEDCVVPPATGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAAACLGEPSISGDAGRVPDVEARALSGGEGPPRRDGRFTTTAAASLADFTTTEPKEQQSRLVDGYATIATAAYPQSRPPTTTEQSSLP-AARPTVAAERPPQQEQRGPLVKGQGANINTRDRDTGGVKHPGATAVVHGERRTGASDEGARAEEPTPGRWNRNANVGPTGGSKEQGRREIELSAGTGGRGRRSENRGGEGGGLETGIVGGKSWPSWRTFACILLLSALGLSTFLRGSMPHWLPFFGGGRRQRWAKDLDSAIAHARSRAGSFCSGRASVFSGDPVDDSDLPGLISDSEEGEDGNDTQGVVPGDDDGEAPLMWDRRPKPDDYLIFHPVLGVVPAGVVRAWGGDGCGGWGGVRAEAAGARAGGTNGGTXGKGCGCSSKSSSPRGARAPAAMSSKATAVGGVVKGKQLPPDEWPEWLAARRATAAAAVADVEAGKKGVGAATIRPAAEAVPTEADAITTAPAAVQGREVNDGREVQRRGDNERTATATEARPAAASGGKTVVGVGQTVDPHHQQQALGNASRTRPAAIGLQFEDGCVNDGGGGDSSTEGPRPLGSDGGDALSFVGGGGGSAGSYCPSEDNNIDVRAGDFSARRVSLSAEQPPAMTAGYRVS 835
BLAST of mRNA_Ecto-sp13_S_contig9660.21290.1 vs. uniprot
Match: D8LDJ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDJ6_ECTSI) HSP 1 Score: 809 bits (2090), Expect = 7.670e-286 Identity = 436/546 (79.85%), Postives = 449/546 (82.23%), Query Frame = 1
Query: 1 DGEGASVANGGGDGTKGVESNGKLWDGQATGVPNSAMEPSCHLLDRPSDAYPGAVKTIGGTVPDILQDSSWCAGDEHCVVPPATEAGNKEEAVRGXXXXXXXXXXXXXXXXXXXXXXXXXX-EAAVCRGELSIPGDAGRVPDDEARALSSREGPPRHDGRFTTIAADSLADFTAAKPKEQQSRLVDGYATIATTAYPQPRPPTTTEHSSLPTAARPNVAAKRPPQQEQRGPLVKGKGANTNTRDRDTGGVEHPGATPVVHGDKRTGASDEGVRAEEPTPGRWNGHANVGHTGGSKKKGRSERELSAGTGRGGSGSEKWGGEGGVLEASTVGSKAWPSWRTFACILLLSALVLGTFLRGDMPHWLPFFGGDRRQRWAIDLDSAIAHARSRAGSFCSGRASVFSGDPADDSDLPGLISDSEEGEDSTADQGVVPGDGDGETPLMWDRRPKPDDYLVFHPVLGVVPAGVVRAWGGDGCGGWGGVRAEAAGASAXXXXXXXXXKGCGCSSESSSPRGARAPAAVSSKAIAVGGVARGKQLPPDEWPEWLA 1635
DGEGA ANGGG+G KGV SNGK WDGQA GVP A+EPSCHL DR SDAYPGAVKTIGGTVPDILQDSSWCAG E CV+PPAT AGNK+EAVRG XXXXXXXXX EAA CRGE SIPGDAGRVPDDEARA SS EGPPR DGRFTT AA SLADFT A PKEQQSRLVDGYATIAT AYPQ RPP+TTE SSLPT ARP VA +RPPQQEQRGPLVKG+GANTNTRDRDTGGV+HPGAT VVHGD RTGA+DEG RAEEPTPGRWN HA VG TGGSK KGR EREL A GVLE + VG KAWPSWR FACILLLSALVLGTFLRG +PHWLPFFGGDRRQRWAIDLDSAIAHARSRAGSFCSGRASVFSGDP DDSDLP LISDSEEGED DQGVVPGD DGETPLMWDRRPKPDDYLVFHPVLGVVPAGVVRAWGGDGCGGWGGVRAEAAGA KGCGCSS+SSSPR A APAAVSSKAIAV GV +GKQLPPDEWPEWLA
Sbjct: 100 DGEGACSANGGGNGNKGVRSNGKPWDGQAWGVPAPALEPSCHLSDRSSDAYPGAVKTIGGTVPDILQDSSWCAGGEDCVLPPATGAGNKKEAVRGGGVGGSQEGTGSCIDAAXXXXXXXXXXEAAACRGESSIPGDAGRVPDDEARASSSGEGPPRRDGRFTTTAAASLADFTTAGPKEQQSRLVDGYATIATAAYPQSRPPSTTEQSSLPTEARPTVATERPPQQEQRGPLVKGQGANTNTRDRDTGGVKHPGATAVVHGDGRTGATDEGARAEEPTPGRWNRHAKVGPTGGSKGKGRRERELPAXXXXXXXXXXXXXXXXGVLETAIVGGKAWPSWRAFACILLLSALVLGTFLRGSIPHWLPFFGGDRRQRWAIDLDSAIAHARSRAGSFCSGRASVFSGDPVDDSDLPDLISDSEEGEDGNGDQGVVPGDDDGETPLMWDRRPKPDDYLVFHPVLGVVPAGVVRAWGGDGCGGWGGVRAEAAGARVGGTNGGTGGKGCGCSSKSSSPRSALAPAAVSSKAIAVAGVVKGKQLPPDEWPEWLA 645 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9660.21290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9660.21290.1 >prot_Ecto-sp13_S_contig9660.21290.1 ID=prot_Ecto-sp13_S_contig9660.21290.1|Name=mRNA_Ecto-sp13_S_contig9660.21290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=693bp MEPSCHLLDRPSDAYPGAVKTIGGTVPDILQDSSWCAGDEHCVVPPATEAback to top mRNA from alignment at Ecto-sp13_S_contig9660:6..2686+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9660.21290.1 ID=mRNA_Ecto-sp13_S_contig9660.21290.1|Name=mRNA_Ecto-sp13_S_contig9660.21290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2681bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9660:6..2686+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9660:6..2686+ >mRNA_Ecto-sp13_S_contig9660.21290.1 ID=mRNA_Ecto-sp13_S_contig9660.21290.1|Name=mRNA_Ecto-sp13_S_contig9660.21290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2079bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9660:6..2686+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |