mRNA_Ecto-sp13_S_contig965.21279.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig965.21279.1
Unique NamemRNA_Ecto-sp13_S_contig965.21279.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig965.21279.1 vs. uniprot
Match: D8LHD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD0_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 2.410e-30
Identity = 120/195 (61.54%), Postives = 124/195 (63.59%), Query Frame = 1 
Query:   97 SFPALHITSAALRHQLHRKLGGMGG-APEDLASTAAGSSGV--GHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDGPDLQYTSPLGLTCGVLRPTPQERFVVGGNXXXXXXXXXXXXXXXGATRIRERRSPSNSMTGTTLFSQQGEDGNRGGSGWGPFSSTAPDSFLQQGSGGGCGDVDGSMSFTGNDSGGE 672
            S PALH  S   RHQLHRK GGMGG APEDL+STAAG +GV  G QGXXXXXXXXXXXXXXXXXXXXXXXXXX  L D P LQY SP   T GVLRPTPQE FVV G                GATRIR  RS S++M G T  SQQGEDGN GG   G      P   LQQGSG     VDG M   GN SG E
Sbjct:   32 SSPALHDASTTQRHQLHRKRGGMGGGAPEDLSSTAAGGTGVSLGRQGXXXXXXXXXXXXXXXXXXXXXXXXXX--LPDDPGLQYRSPAVSTNGVLRPTPQEHFVVDGRGGGNSSSSS------GATRIRGCRSASSAMAGMTSSSQQGEDGNGGGHRLGSVLLDTPGHSLQQGSGXXXXXVDGGMGLMGNSSGDE 218
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BLAST of mRNA_Ecto-sp13_S_contig965.21279.1 vs. uniprot
Match: A0A6H5KJQ4_9PHAE (EXS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJQ4_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 3.000e-23
Identity = 151/295 (51.19%), Postives = 166/295 (56.27%), Query Frame = 1 
Query:   55 MWAFYRNESDRRALSFPALHITSAALRHQLHRKLGGMGGAPEDLASTAAGSSGVGHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDGPDLQYTS-PLGLTCGVLRPTPQERFVVGGNXXXXXXXXXXXXXXX-----------GATRIRERRSPSNSMTGTT---LFSQQGEDGNRGGSGWGPFSSTAPDSFLQQGSGGGCGDVDGSMS-----------FTGNDSGGEA*LDHRRPVRADLPQENHRRAI--------RRLPPASVVQDAQLRRLCY*CMEMGCRRAEAAG 837
            MWAFYRNESD+ A    ALH  SA+LRHQLHRKLGGMGG  ED +S            XXXXXXXXXXXXXXXXXXXXXXXXXXXXLLD PDLQY+S P+  T GVLRPTPQE F+V G+   XXXXXXXXXXXX           GATRIR RRS SN M GT         GED N  GS     SS+AP S    GSG G GDVDG  +           F  N  G  A  D          + + +RAI        R L    +  DA +R      ME+ CRR E AG
Sbjct:    1 MWAFYRNESDQCAAKLSALHDASASLRHQLHRKLGGMGGVREDFSSAXXXXX------XXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDDPDLQYSSSPVVSTGGVLRPTPQEHFLVAGSGAGXXXXXXXXXXXXXXXXXXXXXXXGATRIRGRRSSSNGMGGTAPXXXXXXXGEDENGWGSXXXXMSSSAP-SGPSVGSGVG-GDVDGGAAKANAGFGGGNGFLSNSGGAGAGDDESATTEDPYVRASLKRAIVELYDTCHRLLSFKMLNYDAFVR-----LMELHCRRPEVAG 282
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BLAST of mRNA_Ecto-sp13_S_contig965.21279.1 vs. uniprot
Match: D8LHJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ2_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 8.680e-22
Identity = 70/118 (59.32%), Postives = 78/118 (66.10%), Query Frame = 1 
Query:   40 QERERMWAFYRNESDRRALSFPALHITSAALRHQLHRKLGGMGGAPEDLASTAA-GSSGVGHQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDGPDLQYTS-PLGLTCGVLRPTPQ 387
            +E ERMWAFYRNESD+ A    ALH  SA+LRHQLHRKLGGMGG PED +S AA G SGVG++GXXXXXX                      LLD PDLQY+S P+  T GVLRPTPQ
Sbjct:  154 EELERMWAFYRNESDQCAAKLSALHDASASLRHQLHRKLGGMGGVPEDFSSAAAAGGSGVGYEGXXXXXXAVGDGPGGTAATTAS-------LLDDPDLQYSSSPVVSTGGVLRPTPQ 264
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig965.21279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LHD0_ECTSI2.410e-3061.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJQ4_9PHAE3.000e-2351.19EXS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LHJ2_ECTSI8.680e-2259.32Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig965contigEcto-sp13_S_contig965:13982..15700 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score102.1
Seed ortholog evalue3.3e-19
Seed eggNOG ortholog2880.D8LHJ2
Model size849
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.phosphate ion transport
EggNOG OGsCOG5409@1,KOG1162@2759
Cds size624
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464229.2956088-UTR-Ecto-sp13_S_contig965:13981..140351681464229.2956088-UTR-Ecto-sp13_S_contig965:13981..14035Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig965 13982..14035 +
1681464229.3317819-UTR-Ecto-sp13_S_contig965:15030..151211681464229.3317819-UTR-Ecto-sp13_S_contig965:15030..15121Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig965 15031..15121 +
1681464229.3497546-UTR-Ecto-sp13_S_contig965:15620..157001681464229.3497546-UTR-Ecto-sp13_S_contig965:15620..15700Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig965 15621..15700 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464229.3086607-CDS-Ecto-sp13_S_contig965:14035..143681681464229.3086607-CDS-Ecto-sp13_S_contig965:14035..14368Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig965 14036..14368 +
1681464229.3204148-CDS-Ecto-sp13_S_contig965:14739..150301681464229.3204148-CDS-Ecto-sp13_S_contig965:14739..15030Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig965 14740..15030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig965.21279.1prot_Ecto-sp13_S_contig965.21279.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig965 14036..15030 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig965.21279.1

>prot_Ecto-sp13_S_contig965.21279.1 ID=prot_Ecto-sp13_S_contig965.21279.1|Name=mRNA_Ecto-sp13_S_contig965.21279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=208bp
MWAFYRNESDRRALSFPALHITSAALRHQLHRKLGGMGGAPEDLASTAAG
SSGVGHQGGGGGNKTSSSGGGGGDGPGVTTTTTTTTLLDGPDLQYTSPLG
LTCGVLRPTPQERFVVGGNGGGGSSSGGSGSSSSGATRIRERRSPSNSMT
GTTLFSQQGEDGNRGGSGWGPFSSTAPDSFLQQGSGGGCGDVDGSMSFTG
NDSGGEA*
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mRNA from alignment at Ecto-sp13_S_contig965:13982..15700+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig965.21279.1 ID=mRNA_Ecto-sp13_S_contig965.21279.1|Name=mRNA_Ecto-sp13_S_contig965.21279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1719bp|location=Sequence derived from alignment at Ecto-sp13_S_contig965:13982..15700+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGTAACCCTGACCGCTATGGTGATGCCTCCCGCCCATACAGGAGCGGGA
GCGGATGTGGGCCTTCTATCGGAACGAGAGTGACAGGCGGGCCCTAAGCT
TTCCAGCCCTCCACATCACTTCCGCCGCCCTTCGACACCAGCTCCACCGG
AAGCTGGGTGGGATGGGGGGTGCACCTGAAGACCTTGCTTCGACCGCAGC
GGGCAGCAGCGGCGTTGGTCATCAGGGCGGAGGTGGCGGAAACAAGACCA
GCAGCAGTGGTGGCGGTGGCGGCGACGGTCCTGGTGTTACCACGACGACG
ACGACGACGACTCTCCTGGATGGCCCAGACCTGCAGTACACCAGCCCGCT
CGGTTTGACTTGTGGGGTGCTGCGTCCGACCCCTCAGGTGGGATTGGGTT
GGGCTGTGTGTTGGATGTATTCCTTTTTAGGAGATTGGACGATAAAAGGG
TACAGCCTCGACGTGACGGGTGTAACTGCGGAAGGAGGTACAATGTGGTG
TGTGTGTTTTCTTGCTTTGTTCCACACAATCGCGTCTACACGTGGACCGA
CCGTGTTTGCCTATCCCCCCCGTCCTCCCCCGTCCCCACTTCGGCATGTG
TCCCGACATCGGCGTGGGTACCCCCCCTCCCCCAGCGCGTGCTCGTCTCA
ACGAATCATTTCCTGTGCGAATACTGTCAACGAGCCGGTTATTTTGGACC
GTTTCGCCATACCGTCGACTCAAGCTATGGACACACTGCTTGAACGACCG
CCAACCAGGAACGCTTTGTCGTGGGCGGGAACGGCGGCGGCGGTAGCAGC
AGCGGCGGCAGTGGCAGCAGCAGCAGCGGTGCCACGAGAATCCGCGAGCG
CAGGTCACCCTCGAACTCGATGACGGGCACGACGTTATTTTCACAGCAGG
GCGAGGACGGGAACCGGGGGGGCTCTGGCTGGGGTCCGTTCTCCTCGACA
GCCCCCGACAGTTTCCTGCAGCAGGGGAGCGGTGGTGGCTGTGGCGACGT
GGACGGTAGCATGAGCTTCACGGGCAACGACAGCGGCGGCGAAGCTTGAC
TTGACCACCGAAGACCCGTACGTGCGGACCTCCCTCAAGAGAACCATCGT
CGAGCTATACGACGCCTACCACCGGCTTCCGTCGTTCAAGGTGGGGGAAG
CCGGGGTTGCTCGTTGCTGCTTGCTCTGGTGTGCTGAACGATGGACGGCG
CGTTATACGGTCGAGGCGGTATGAGGCTCCAAAACGTGAGAGACCCGCCT
CAAATTCCTGGGTGCTCCTTATTTTTCCCCCGCGTTCGCGGGGGGGGGAT
TCTTGGAACACCCCTTTAGTATGTCCTCAATTGTATAGTGCGTTTCAGCT
TCCCCTGCGGTGATAGACGAATGACTTTGTGTTACGGGCCGTTCCACTGA
GATTGCCCCGAAAAGTTTTTTGGAGGGGGGTGATGCCGGGCAGCCTCCCC
TGAAAACATACACCCTTGGCTGATACACTGGCGCTTGGCCCCATCGAGCG
TCTCTTGTGTGCAGAGCTCGTGCCACGTTGCAACACACACCGAAAATGTT
TTTATGCATTCGTTTGCTTTGCTAATGCCGCACCTGTTGCGAAACACTTT
GGCTTCTCTCCCTGCCCCCCCTCCCAAAAAAAACAACAGATGCTCAACTA
CGACGCCTTTGCTACTGATGCATGGAAATGGGCTGCCGTCGTGCCGAGGC
AGCGGGGATAGCGGGCGCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig965:13982..15700+

>mRNA_Ecto-sp13_S_contig965.21279.1 ID=mRNA_Ecto-sp13_S_contig965.21279.1|Name=mRNA_Ecto-sp13_S_contig965.21279.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=624bp|location=Sequence derived from alignment at Ecto-sp13_S_contig965:13982..15700+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTGGGCCTTCTATCGGAACGAGAGTGACAGGCGGGCCCTAAGCTTTCC
AGCCCTCCACATCACTTCCGCCGCCCTTCGACACCAGCTCCACCGGAAGC
TGGGTGGGATGGGGGGTGCACCTGAAGACCTTGCTTCGACCGCAGCGGGC
AGCAGCGGCGTTGGTCATCAGGGCGGAGGTGGCGGAAACAAGACCAGCAG
CAGTGGTGGCGGTGGCGGCGACGGTCCTGGTGTTACCACGACGACGACGA
CGACGACTCTCCTGGATGGCCCAGACCTGCAGTACACCAGCCCGCTCGGT
TTGACTTGTGGGGTGCTGCGTCCGACCCCTCAGGAACGCTTTGTCGTGGG
CGGGAACGGCGGCGGCGGTAGCAGCAGCGGCGGCAGTGGCAGCAGCAGCA
GCGGTGCCACGAGAATCCGCGAGCGCAGGTCACCCTCGAACTCGATGACG
GGCACGACGTTATTTTCACAGCAGGGCGAGGACGGGAACCGGGGGGGCTC
TGGCTGGGGTCCGTTCTCCTCGACAGCCCCCGACAGTTTCCTGCAGCAGG
GGAGCGGTGGTGGCTGTGGCGACGTGGACGGTAGCATGAGCTTCACGGGC
AACGACAGCGGCGGCGAAGCTTGA
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