mRNA_Ecto-sp13_S_contig964.21267.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig964.21267.1
Unique Name	mRNA_Ecto-sp13_S_contig964.21267.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig964.21267.1 vs. uniprot
Match: D7FXM0_ECTSI (Histone domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXM0_ECTSI)

HSP 1 Score: 260 bits (664), Expect = 1.970e-86
Identity = 142/144 (98.61%), Postives = 142/144 (98.61%), Query Frame = 3

Query:  114 MARLKHTKNKAVGGSKPTKSPRKTLASRQGGGGSGDGGEPRKRRRFRPGERALKEIRAYQRTTELLLRKLPFARLVKEVQETLTPAGKSYRWQAAALLALQEAAEAHLVSLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE 545
            MARLKHTKNKAVGGSK TKSPRKTLASRQGGGGS DGGEPRKRRRFRPGERALKEIRAYQRTTELLLRKLPFARLVKEVQETLTPAGKSYRWQAAALLALQEAAEAHLVSLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE
Sbjct:    1 MARLKHTKNKAVGGSKSTKSPRKTLASRQGGGGSADGGEPRKRRRFRPGERALKEIRAYQRTTELLLRKLPFARLVKEVQETLTPAGKSYRWQAAALLALQEAAEAHLVSLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE 144

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BLAST of mRNA_Ecto-sp13_S_contig964.21267.1 vs. uniprot
Match: A0A836C8D2_9STRA (Histone-fold-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8D2_9STRA)

HSP 1 Score: 153 bits (387), Expect = 2.430e-44
Identity = 96/147 (65.31%), Postives = 112/147 (76.19%), Query Frame = 3

Query:  114 MARLKHT---KNKAVGGSKPTKSPRKTLASRQGGGGSGDGGEPRKRRRFRPGERALKEIRAYQRTTELLLRKLPFARLVKEVQETLTPAGKSYRWQAAALLALQEAAEAHLVSLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE 545
            MAR K T   K+  +GG K +   +KT A  Q  GG+ +  +PRKRR  +PGE+ALKEIRAYQR+TELL+RKLPFARLVKEVQ + TP G  YRW A A+LALQEAAEAHLV LFEDANL  +HAKRVTIM +D QLARRIRG+ RE
Sbjct:    1 MARSKSTPFRKSPMIGGPK-SPGAKKTAARAQAKGGA-EQLKPRKRR-HKPGEKALKEIRAYQRSTELLIRKLPFARLVKEVQTSFTPGGLQYRWAATAVLALQEAAEAHLVGLFEDANLACIHAKRVTIMPKDMQLARRIRGRLRE 144

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BLAST of mRNA_Ecto-sp13_S_contig964.21267.1 vs. uniprot
Match: A0A7S3M2P3_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M2P3_9STRA)

HSP 1 Score: 148 bits (374), Expect = 1.990e-42
Identity = 88/148 (59.46%), Postives = 109/148 (73.65%), Query Frame = 3

Query:  114 MARLKHTKNKAVGGSKPT----KSPRKTLASRQGGGGSGDGGEPRKRRRFRPGERALKEIRAYQRTTELLLRKLPFARLVKEVQETLTPAGKSYRWQAAALLALQEAAEAHLVSLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE 545
            M R K   N  +GGS+P+    KSP+K+  S      +    +   ++R+RPGERALKEIR YQR+T+LL+R+LPFARLV+EVQ ++    K YRWQA A+LALQEAAEAHL SLFEDANLCA+H KRVT+M +DFQLARRIRG  RE
Sbjct:    1 MVRTKE--NVVIGGSRPSARKSKSPKKSTLS------ATAAVQRTNKKRYRPGERALKEIRYYQRSTDLLIRRLPFARLVREVQVSIVSNKKEYRWQADAILALQEAAEAHLSSLFEDANLCAIHGKRVTVMPKDFQLARRIRGPMRE 140

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BLAST of mRNA_Ecto-sp13_S_contig964.21267.1 vs. uniprot
Match: W7TL17_9STRA (Histone h3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TL17_9STRA)

HSP 1 Score: 149 bits (376), Expect = 1.210e-41
Identity = 96/154 (62.34%), Postives = 111/154 (72.08%), Query Frame = 3

Query:  114 MARLKHTKNKA----VGG--SKPTKSPRKTLASRQGGGGS----GDGGEPRKRRRFRPGERALKEIRAYQRTTELLLRKLPFARLVKEVQETLTPAGKSYRWQAAALLALQEAAEAHLVSLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE 545
            MAR+K  K       VGG  + P K PRK  +  +GG G+      G E  K+RR RPG RAL+EIR YQRTTELLLR+LPFARLV+EVQ  ++   K YRWQA +LLALQEAAEAHLV LFEDANLCA+HAKRVTIM +D QLARRIRG  R+
Sbjct:    1 MARMKTAKGTLGRGIVGGKGTSPRKVPRKQASPARGGAGAERGKDKGDEEPKKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEIST--KQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRD 152

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BLAST of mRNA_Ecto-sp13_S_contig964.21267.1 vs. uniprot
Match: A0A836CIP5_9STRA (Histone H3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CIP5_9STRA)

HSP 1 Score: 145 bits (366), Expect = 1.920e-41
Identity = 78/103 (75.73%), Postives = 87/103 (84.47%), Query Frame = 3

Query:  237 KRRRFRPGERALKEIRAYQRTTELLLRKLPFARLVKEVQETLTPAGKSYRWQAAALLALQEAAEAHLVSLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE 545
            ++RR +PGE+ALKEIR YQR+TELL+RKLPFARLV+EVQE  TP G  YRW A ALLALQ AAEAHLV LFEDANL A+HAKRVTI  RD QLARRIRG+ RE
Sbjct:   21 RQRRHKPGEKALKEIRTYQRSTELLIRKLPFARLVREVQEMFTPRGVLYRWAADALLALQHAAEAHLVGLFEDANLAAIHAKRVTIQPRDMQLARRIRGRMRE 123

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BLAST of mRNA_Ecto-sp13_S_contig964.21267.1 vs. uniprot
Match: A0A7S3JND5_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JND5_9STRA)

HSP 1 Score: 142 bits (359), Expect = 2.070e-40
Identity = 75/103 (72.82%), Postives = 90/103 (87.38%), Query Frame = 3

Query:  237 KRRRFRPGERALKEIRAYQRTTELLLRKLPFARLVKEVQETLTPAGKSYRWQAAALLALQEAAEAHLVSLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE 545
            K+ R RPG RALKEIR YQR+T+LLLRKLPFARLV+E+Q++     +  RWQA A++ALQEAAEAHLV+LF+DANLCA+HAKRVT+MVRD QLARRIRGQ+RE
Sbjct:   21 KKHRLRPGMRALKEIRKYQRSTDLLLRKLPFARLVREIQQSFVQ--RDLRWQAEAIIALQEAAEAHLVALFQDANLCAIHAKRVTLMVRDLQLARRIRGQARE 121

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BLAST of mRNA_Ecto-sp13_S_contig964.21267.1 vs. uniprot
Match: A0A7S2BDC5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BDC5_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.120e-40
Identity = 76/101 (75.25%), Postives = 86/101 (85.15%), Query Frame = 3

Query:  243 RRFRPGERALKEIRAYQRTTELLLRKLPFARLVKEVQETLTPAGKSYRWQAAALLALQEAAEAHLVSLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE 545
            RR RPGERALKEIR YQR+T+LL+RKLPFARLV+EV    T   K YRWQA+ALLALQE+AEAHLV LFEDANLC +H+KRVT+MV+D QLARRIRG  RE
Sbjct:    1 RRHRPGERALKEIRTYQRSTDLLIRKLPFARLVREVMLQFT--NKEYRWQASALLALQESAEAHLVHLFEDANLCTIHSKRVTVMVKDIQLARRIRGPMRE 99

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BLAST of mRNA_Ecto-sp13_S_contig964.21267.1 vs. uniprot
Match: A0A7S4EEK9_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEK9_9STRA)

HSP 1 Score: 143 bits (360), Expect = 3.340e-40
Identity = 75/104 (72.12%), Postives = 92/104 (88.46%), Query Frame = 3

Query:  234 RKRRRFRPGERALKEIRAYQRTTELLLRKLPFARLVKEVQETLTPAGKSYRWQAAALLALQEAAEAHLVSLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE 545
            R++RR RPGERALKEIR YQ +T+LL+R+LPFARLV+E+Q+ L+   ++Y WQA+A+LALQEAAEAHLV LFED NLCA+HAKRVTIM +D QLARRIRGQ+RE
Sbjct:   47 RRKRRMRPGERALKEIRQYQNSTDLLIRRLPFARLVREIQQGLSR--RAYSWQASAILALQEAAEAHLVGLFEDCNLCAVHAKRVTIMPKDMQLARRIRGQTRE 148

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BLAST of mRNA_Ecto-sp13_S_contig964.21267.1 vs. uniprot
Match: K8YX25_NANGC (Histone H3 n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YX25_NANGC)

HSP 1 Score: 142 bits (358), Expect = 3.860e-40
Identity = 83/115 (72.17%), Postives = 92/115 (80.00%), Query Frame = 3

Query:  216 GDGGEPRK-----RRRFRPGERALKEIRAYQRTTELLLRKLPFARLVKEVQETLTPAGKSYRWQAAALLALQEAAEAHLVSLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE 545
            G G  PRK     +RR RPG RAL+EIR YQRTTELLLR+LPFARLV+EVQ  ++   K YRWQA +LLALQEAAEAHLV LFEDANLCA+HAKRVTIM +D QLARRIRG  RE
Sbjct:   18 GKGTSPRKDEEPKKRRARPGMRALREIRQYQRTTELLLRRLPFARLVREVQGEIST--KQYRWQANSLLALQEAAEAHLVHLFEDANLCAIHAKRVTIMPKDMQLARRIRGPLRE 130

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BLAST of mRNA_Ecto-sp13_S_contig964.21267.1 vs. uniprot
Match: A0A8K1FGE4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FGE4_PYTOL)

HSP 1 Score: 142 bits (358), Expect = 8.790e-40
Identity = 76/98 (77.55%), Postives = 86/98 (87.76%), Query Frame = 3

Query:  240 RRRFRPGERALKEIRAYQRTTELLLRKLPFARLVKEVQETLTPAGKSYRWQAAALLALQEAAEAHLVSLFEDANLCALHAKRVTIMVRDFQLARRIRG 533
            +RR+RPG  AL+EIR YQR+TELLLRKLPFARLV+E+Q   TP  + YRWQA ALLALQEAAEAHLV LFEDANLCA+HAKRVT+MV+D QLARRIRG
Sbjct:   57 KRRYRPGTVALREIRFYQRSTELLLRKLPFARLVREIQMEFTP--REYRWQAEALLALQEAAEAHLVRLFEDANLCAIHAKRVTLMVKDIQLARRIRG 152

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig964.21267.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig964.21267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FXM0_ECTSI	1.970e-86	98.61	Histone domain-containing protein n=2 Tax=Ectocarp...	[more]
A0A836C8D2_9STRA	2.430e-44	65.31	Histone-fold-containing protein n=1 Tax=Tribonema ...	[more]
A0A7S3M2P3_9STRA	1.990e-42	59.46	Hypothetical protein n=1 Tax=Spumella elongata Tax...	[more]
W7TL17_9STRA	1.210e-41	62.34	Histone h3 n=2 Tax=Monodopsidaceae TaxID=425072 Re...	[more]
A0A836CIP5_9STRA	1.920e-41	75.73	Histone H3 n=1 Tax=Tribonema minus TaxID=303371 Re...	[more]
A0A7S3JND5_9STRA	2.070e-40	72.82	Hypothetical protein n=1 Tax=Aureoumbra lagunensis...	[more]
A0A7S2BDC5_9STRA	2.120e-40	75.25	Hypothetical protein n=1 Tax=Florenciella parvula ...	[more]
A0A7S4EEK9_9STRA	3.340e-40	72.12	Hypothetical protein n=1 Tax=Pseudo-nitzschia aust...	[more]
K8YX25_NANGC	3.860e-40	72.17	Histone H3 n=1 Tax=Nannochloropsis gaditana (strai...	[more]
A0A8K1FGE4_PYTOL	8.790e-40	77.55	Uncharacterized protein n=1 Tax=Pythium oligandrum...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig964	contig	Ecto-sp13_S_contig964:6582..11196 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	1
Start	1
Seed ortholog score	264.2
Seed ortholog evalue	3.5e-68
Seed eggNOG ortholog	2880.D7FXM0
Preferred name	CENPA
Model size	608
KEGG ko	ko:K11253,ko:K11495
KEGG Pathway	ko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting category	other localisation
GOs	GO:0000003,GO:0000041,GO:0000070,GO:0000132,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000281,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0000819,GO:0000910,GO:0000939,GO:0000941,GO:0001817,GO:0001818,GO:0001889,GO:0001932,GO:0001934,GO:0002526,GO:0002577,GO:0002578,GO:0002583,GO:0002584,GO:0002589,GO:0002590,GO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0002697,GO:0002698,GO:0002700,GO:0002701,GO:0002703,GO:0002704,GO:0002706,GO:0002707,GO:0002709,GO:0002710,GO:0002718,GO:0002719,GO:0002724,GO:0002725,GO:0002791,GO:0002793,GO:0002819,GO:0002820,GO:0002822,GO:0002823,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0003690,GO:0003774,GO:0003777,GO:0003824,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005720,GO:0005721,GO:0005727,GO:0005729,GO:0005737,GO:0005768,GO:0005769,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0005887,GO:0005938,GO:0006276,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006336,GO:0006338,GO:0006355,GO:0006357,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006875,GO:0006879,GO:0006950,GO:0006952,GO:0006953,GO:0006954,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007080,GO:0007088,GO:0007154,GO:0007162,GO:0007163,GO:0007165,GO:0007166,GO:0007167,GO:0007178,GO:0007275,GO:0007346,GO:0007565,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009267,GO:0009566,GO:0009567,GO:0009605,GO:0009719,GO:0009790,GO:0009792,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009897,GO:0009966,GO:0009967,GO:0009968,GO:0009986,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0010106,GO:0010468,GO:0010469,GO:0010556,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010638,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0010817,GO:0010862,GO:0010948,GO:0010959,GO:0012505,GO:0015031,GO:0015629,GO:0015630,GO:0015682,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019219,GO:0019220,GO:0019222,GO:0019237,GO:0019725,GO:0019953,GO:0022402,GO:0022407,GO:0022408,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030001,GO:0030003,GO:0030010,GO:0030100,GO:0030155,GO:0030162,GO:0030509,GO:0030541,GO:0030543,GO:0030863,GO:0030864,GO:0030881,GO:0031055,GO:0031099,GO:0031100,GO:0031224,GO:0031226,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031329,GO:0031330,GO:0031399,GO:0031401,GO:0031410,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0031618,GO:0031667,GO:0031668,GO:0031669,GO:0031935,GO:0031937,GO:0031974,GO:0031981,GO:0031982,GO:0032091,GO:0032092,GO:0032268,GO:0032269,GO:0032270,GO:0032434,GO:0032435,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032886,GO:0032991,GO:0032993,GO:0033036,GO:0033043,GO:0033044,GO:0033365,GO:0033554,GO:0033572,GO:0034080,GO:0034220,GO:0034502,GO:0034506,GO:0034508,GO:0034613,GO:0034622,GO:0034724,GO:0034728,GO:0034755,GO:0034756,GO:0039706,GO:0040001,GO:0042176,GO:0042177,GO:0042221,GO:0042325,GO:0042327,GO:0042445,GO:0042446,GO:0042592,GO:0042594,GO:0042886,GO:0043044,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043235,GO:0043269,GO:0043393,GO:0043486,GO:0043505,GO:0043565,GO:0043933,GO:0044085,GO:0044092,GO:0044093,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044454,GO:0044459,GO:0044464,GO:0044703,GO:0044706,GO:0044815,GO:0044877,GO:0045132,GO:0045177,GO:0045178,GO:0045184,GO:0045786,GO:0045807,GO:0045839,GO:0045861,GO:0045930,GO:0045937,GO:0046602,GO:0046603,GO:0046605,GO:0046606,GO:0046634,GO:0046636,GO:0046821,GO:0046883,GO:0046887,GO:0046916,GO:0048259,GO:0048260,GO:0048285,GO:0048471,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048732,GO:0048856,GO:0048871,GO:0048878,GO:0050000,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0050801,GO:0050863,GO:0050865,GO:0050866,GO:0050868,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051098,GO:0051099,GO:0051100,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051225,GO:0051234,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051248,GO:0051249,GO:0051250,GO:0051252,GO:0051276,GO:0051293,GO:0051294,GO:0051301,GO:0051303,GO:0051304,GO:0051307,GO:0051310,GO:0051321,GO:0051382,GO:0051383,GO:0051493,GO:0051494,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0055037,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0060255,GO:0060341,GO:0060393,GO:0060586,GO:0060627,GO:0060968,GO:0061008,GO:0061136,GO:0061638,GO:0061640,GO:0061641,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070199,GO:0070507,GO:0070727,GO:0070848,GO:0070887,GO:0070925,GO:0071103,GO:0071241,GO:0071248,GO:0071281,GO:0071310,GO:0071363,GO:0071459,GO:0071495,GO:0071496,GO:0071702,GO:0071705,GO:0071772,GO:0071773,GO:0071824,GO:0071840,GO:0071944,GO:0072512,GO:0072594,GO:0080090,GO:0090087,GO:0090092,GO:0090100,GO:0090276,GO:0090277,GO:0097159,GO:0097286,GO:0097421,GO:0097708,GO:0098552,GO:0098655,GO:0098657,GO:0098659,GO:0098660,GO:0098662,GO:0098687,GO:0098711,GO:0098739,GO:0098771,GO:0098796,GO:0098797,GO:0098802,GO:0098813,GO:0099568,GO:0099587,GO:0140013,GO:0140014,GO:1900120,GO:1900121,GO:1900122,GO:1900390,GO:1901363,GO:1901799,GO:1902275,GO:1902850,GO:1903037,GO:1903038,GO:1903046,GO:1903047,GO:1903050,GO:1903051,GO:1903362,GO:1903363,GO:1903506,GO:1903530,GO:1903532,GO:1903827,GO:1904282,GO:1904283,GO:1904432,GO:1904434,GO:1904435,GO:1904437,GO:1905269,GO:1990357,GO:1990459,GO:1990641,GO:1990712,GO:1990837,GO:2000008,GO:2000058,GO:2000059,GO:2000112,GO:2000272,GO:2000273,GO:2001141,GO:2001185,GO:2001186,GO:2001252
Exons	5
EggNOG free text desc.	protein heterodimerization activity
EggNOG OGs	COG2036@1,KOG1745@2759
Ec32 ortholog description	Histone H3, probable CenH3
Ec32 ortholog	Ec-28_002250.1
Cds size	435
COG Functional cat.	B
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03036,ko04147

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig964.21267.1	prot_Ecto-sp13_S_contig964.21267.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig964 6642..11083 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464228.4958572-UTR-Ecto-sp13_S_contig964:6581..6641	1681464228.4958572-UTR-Ecto-sp13_S_contig964:6581..6641	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig964 6582..6641 -
1681464228.5593214-UTR-Ecto-sp13_S_contig964:11083..11196	1681464228.5593214-UTR-Ecto-sp13_S_contig964:11083..11196	Ectocarpus species13 EcNAP12_S_4_19m	UTR	Ecto-sp13_S_contig964 11084..11196 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681464228.5100474-CDS-Ecto-sp13_S_contig964:6641..6692	1681464228.5100474-CDS-Ecto-sp13_S_contig964:6641..6692	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig964 6642..6692 -
1681464228.5201557-CDS-Ecto-sp13_S_contig964:7381..7462	1681464228.5201557-CDS-Ecto-sp13_S_contig964:7381..7462	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig964 7382..7462 -
1681464228.5303736-CDS-Ecto-sp13_S_contig964:8487..8565	1681464228.5303736-CDS-Ecto-sp13_S_contig964:8487..8565	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig964 8488..8565 -
1681464228.5400395-CDS-Ecto-sp13_S_contig964:8842..9002	1681464228.5400395-CDS-Ecto-sp13_S_contig964:8842..9002	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig964 8843..9002 -
1681464228.5497832-CDS-Ecto-sp13_S_contig964:11018..11083	1681464228.5497832-CDS-Ecto-sp13_S_contig964:11018..11083	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig964 11019..11083 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig964:6582..11196-
coding sequence from alignment at Ecto-sp13_S_contig964:6582..11196-

protein sequence of mRNA_Ecto-sp13_S_contig964.21267.1

>prot_Ecto-sp13_S_contig964.21267.1 ID=prot_Ecto-sp13_S_contig964.21267.1|Name=mRNA_Ecto-sp13_S_contig964.21267.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=145bp
MARLKHTKNKAVGGSKPTKSPRKTLASRQGGGGSGDGGEPRKRRRFRPGE
RALKEIRAYQRTTELLLRKLPFARLVKEVQETLTPAGKSYRWQAAALLAL
QEAAEAHLVSLFEDANLCALHAKRVTIMVRDFQLARRIRGQSRE*

mRNA from alignment at Ecto-sp13_S_contig964:6582..11196-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig964.21267.1 ID=mRNA_Ecto-sp13_S_contig964.21267.1|Name=mRNA_Ecto-sp13_S_contig964.21267.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4615bp|location=Sequence derived from alignment at Ecto-sp13_S_contig964:6582..11196- (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAGGTCGGCTCGGAAGGGCAAGCAAGCAACGAGCACACGGAAAGCACG
TCATCAAGCGCGCGAGGGTTTCGTGGCTCCAAGCGTGCGAAGGGAAGGGG
ATCTGGGGAACCAATGGCGCGCCTCAAACACACCAAGAACAAGGCGGTCG
GCGGCAGCAAGCCCACCAAGTCGCCGAGGTGTGTGTGTGAAGCCAGATCT
ATTTTGCGCGCGTTTTTTTTGCCAGTGTTCTTGGGGTCCTACTCTGCTCT
AACGCTGCTTTGCTCCGTGCGGGAAAAGCATCGTTCGGAGTGCTCTGCCG
CTCGCAACTTTGGCCGGACCTTCCGCCAGCGTGGTTGGATCTTGTGTTTA
ACGTAGTCGGCGGTGGTCATGCGGCTCGCCCTGGATGTTGGTGTGTGTAT
TTTGCGTTTTGTAACACAGCTGTCCGGTGACCGTAGCGGTAGCCTTACAG
AATACAGGTTGTTTTGGTGTTGGAGGGAGGATAGCCGAAACGAGGCTGCA
TCTCTTGCAACAAACGCCAGCACGCCCACCTCTAGAGCTTCGAATGACAG
AGCTCAACATGTTGCTGCCAGTCCAAGATTGGTGCCGCTGTGTTGTTGAT
AAGAGGGAACCGGGCGTGGTTTGCACACACGTCTCAAGGTCAACCAACGC
CGCTTACGGGGGACGGAGGGGGGTTGCCCACATCGTATTTCAAACGTCGC
GGAATTCACCACTACGCATCCTCATGTGCGTTGTGCATAATCTCCACCTC
TATGAACAGTTTCAAATTGCAAAGTTTTACATGTTGCTGCCAACCAAAGG
TTTGCTGGTGTGTTGTTGACCGAGAAAGTTGGAGTCGTTTCACAATTTTT
TGAGGAGCAAGCGCCCGCGGTGGGTGCACACATCGGCAGGACTATTTGAC
CTACTACTTGTACTACCCTATGAACTGCTACTTTGTTTGTGCCCTGTGTG
GCATGTGGGATCAATACAAGTATGTGATCTTGGGCGTCTTTCATGTCCAT
CATGCGGGCTGCATCTCAGAAACCGCAGCTGATGGTTGGACTGCTGCTGT
AGACGGATACAACGCTATTAATAGGTTGAGCTTTCTGTTCTATCTCAACA
CTTGCAGCAGCAGTCGGTTGATGTACGCGAATTGACGGCAAAGTGAGCAT
TTCCTTTAAGTCCTAACAACTCGAAAACTTGGAAATGGGAGTGAGAGAGG
CGGCGAAACTACAGCTGTAGACTGGAGTGCGTGAAGCCAGACAAACTCCC
TCGACCCCTCACTTCCTTACTGCTTCAGATCAAGGTTGGGCATTGCCTAC
TAACGTCGTAGCACTGCTGTATTCGCCGCACTCGCCTGTGATTGTAGCTT
ACTTGTAGACCACGCCGTCCAACGCGAACCAGGTTGAACATGTCTCTGTT
TCTTGATCGACGGCATGCATTTCCTCGCCCACACCCAAGGGTGTGTTCAG
ACATTTGAGCTAAATACCACCTGGTTGTCGTCCAACGCACGACGTTTGAT
TCTCTTTTAGAGAAGAGCGCCTGTCTCCTTGCACTTGCTTTTAAGTGCAC
GCACCTGACCTCGTGAGCGACAGCCTTGACTTGCTTGCTTTCTTAAAAAG
CGCTGCCTGATTTCAGATACAATCAATCTTTCTTCCGAAAGGCGTGTCCT
CGACTGCTTGTGCATAAGTCCTTCGTGTTTAAAGGAGCCCGACAGCCTAC
AAGGTGATCGAAACTGCTCGCTCGCGTGATGTGCCATTTTCCGTGCTTGC
ACCAGCCGATATCGACGCGAGATTGTCGATGGACAGCGTACTACTGAAGT
ATTTCTGGGCACGCGCGAGTTAGATGGCAACATAGATTCGACGTAAACCG
AGCTGCCTTCCGCAACTTAATTACCGTTACCACGAACCACGAGCAGCAGC
AGCATCAGCAGCAGCAATAATAGTAGTAGCAGCAGCAGCAGCAGCCTTAG
ATGGACGTACGCAAAGTTGCATGAAAAATGCATATTTTTCCTTTTCCAAC
AAGTCAAGTGTTGCGTCTACCCACTGTGGCGTGTGAACGCCCAAAGACTG
TATCTAAATAGTCCCATGATTTCAGTGATCTTATGTATATGTACCTCCTC
GCCTTGATTTCTCGATCTACATGATACGAAACCAACGCACTTATTAGTGG
CGAACTGCACCAGTTACACGAATTTTCGTTGTTGTTCATACCAGGAAAAC
TTTGGCGTCAAGACAGGGAGGCGGGGGATCCGGTGACGGCGGCGAACCTC
GGAAGCGAAGGCGTTTCCGTCCAGGGGAGCGGGCTTTGAAGGAGATCAGG
GCTTACCAGCGCACGACGGAGCTGCTCCTGAGGAAGCTCCCTTTCGCGCG
ATTGGTGCGTGGTGTATCGTTACCCGTTGGTGGCGGCGGTGTTGTCATTG
TTGCTGGTGGTGTTGCTGTTGTTGTTCTTCTTGTTCTTTTGTTGTCATTG
CAACTGTTGTTGCTATTGTCACTGTTGTTGGTGGCAACTTACGTTTCACC
TCATTTTTTTTCGGCCATCTGTGCAGCAACCTATCGTAGATATCATACAC
CCCGAGTACGTATCGTGAATCGCTGCTGTTATTGCCGCTGCTGCTACTGT
TGTTTTGCGGTGGGCTTCCTTCCTCGCGCAGGTGAAGGAGGTGCAGGAGA
CGTTGACACCAGCAGGGAAGTCGTACCGGTGGCAGGCGGCGGCTCTGTTG
GCGTTGCAGGTGCGAGGGAGATGTCCACCCCGCTGCGTGTTGCGTTGCAT
GCACCGCTGGCCCGAAGCAAGCAACGTACCGTAGGTTGCATACGTAAGAT
TTCACACCCCGTGGACTGATTTTCAGAGCGCGATTACTCCACCACGAAGA
GGATGCCGGAATCGAAGGATATGTTTTCAGGAAGCTTTCGACGAGACGTT
TCTGATGCCGCAATTTTTAGGCGCCGTCACTGATTTTACTGCCGAGAAAT
CGAGCTGTGAAAATCAGTCCAGGGGGTGTGATATCTTACACAACCTACGG
TACGCTGCTGAAAGCTTTATGAGAAGTGGCTGCTGAACGGATGTTGGGTT
CCTTACCATCCTAGTTTTAGTGGACGCTGATATGTTCGCCTGTTGGTATG
TTTTCGGACGCACTAACCCAGGTCTTACACGGAGAAGGCCACACAAAAGT
TCTGTTTTTTTGTCCTCCAACAATCGAGTGAAACGTGGAAATCAGGATAT
TGGTATCTTCCTGGTGGTAGTGACGTACGTACAACGAGTACAACAAGGAT
CCGAAGCCCTACGAACAATGTTCTCTGGGTCAGAAGATGTTTAGAAAGGA
ACACTCTTCGCCTGCGGTGGCCAGCCGCAAAAGGTTCTATGTAAGCACCT
AAGATCCCCCCCCGAAGCCGGAAGGAGTGCGGGTCGTGGGGTCTGCTGGT
TGGTTTGTCACGAACTACAACCTCTGCATCGTTGTGATGTCGTCTTCCTG
TAGTGGAAAGAAATACGCTCCACGCCAACGATAGCGTTCATGTCACCCCC
CTTTCTGAAAGTGAACCCGAGTTTGTTTATATATTTTGGCAAAGAGTGGA
CGATGAACATGACCACGCGCAAGTCTTCTTTTAGGCGGCGCGACTTTCGG
CTGGTGGGGGGGATGGTGGGGATTGTACAGCAGGCAAGGGCAACATACAT
GTCTTAATTACCCGCCTATCATTTTTTGTACGCTGTCTCCGAATTGCGTC
TACTCTCTTGTTGTTTTGTTGCCGAAACACACAGGAGGCGGCGGAAGCTC
ACCTAGTGTCTCTCTTCGAGGACGCAAACCTCTGCGCACTACACGCCAAG
CGAGTGACGATAATGGTGAGAGTCGTCACGATCTACCTGCTCCAAACTGC
TGCGTGAGAGGCACCGATAACTTGCACCTGAACGACGCGCGAATGGCGGT
AGACCATCTCGGCATCCGATTTGTAGACGAGTTTGAAGAGGATAGGACAA
CGTCGCGCCCCGAATGAGTGGCGTTCTTGAAGAACAGTGAGTGAGTGAGT
GAGGGAAGGAAGGAAGGAAGAAAACGGAAAACGCGAAACGAGGGTCGCAT
GCATTAGATTAGATGCACTGCAATCGGCGGATGGGTCAACGGCGCCAACT
TGCGAACGATGATTTATCTCGCGGAGAGGGGGATGGCCTTCCATTGCTTC
GGGTGCGAAGCAAAGGCCCATCTTATTTATTTTTTTCGCTGAATCAGGTG
CTTCTGCTTGGAGACCGGACCATGTACGTACCAACTGATTTTTGTTGGGG
AAGGCATGAAAGACGCATGGTAGGGGGGTTGGGCGCCCAGCCGAGGAAGA
CCTCCTCAACAAGCGTGAGGCAGGCAGGCTCCTGCCACGTTCACGCTGCC
TGACAATGGCTGAAGCAGACACGCCAGAACGCGTTGGAATCGTTGTGCGA
AGAGGGTATCACTAACCGTGTGTTGTTGTTTGCATGCTGTTTTGCTCTCC
CCGACCCTAACTCTTGTGTTCCCGCTGCTTGATTCTGTTGTATGGCGAAC
GAAGGTCCGGGACTTCCAGCTAGCTCGCAGGATTCGAGGGCAAAGCCGAG
AGTGAACAAGACAACAGGACCGGGGCATGTGTTCGTACGGATATAGGGAG
TCGTGTCTTCGGGAG

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig964:6582..11196-

>mRNA_Ecto-sp13_S_contig964.21267.1 ID=mRNA_Ecto-sp13_S_contig964.21267.1|Name=mRNA_Ecto-sp13_S_contig964.21267.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=435bp|location=Sequence derived from alignment at Ecto-sp13_S_contig964:6582..11196- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGCGCCTCAAACACACCAAGAACAAGGCGGTCGGCGGCAGCAAGCC
CACCAAGTCGCCGAGGAAAACTTTGGCGTCAAGACAGGGAGGCGGGGGAT
CCGGTGACGGCGGCGAACCTCGGAAGCGAAGGCGTTTCCGTCCAGGGGAG
CGGGCTTTGAAGGAGATCAGGGCTTACCAGCGCACGACGGAGCTGCTCCT
GAGGAAGCTCCCTTTCGCGCGATTGGTGAAGGAGGTGCAGGAGACGTTGA
CACCAGCAGGGAAGTCGTACCGGTGGCAGGCGGCGGCTCTGTTGGCGTTG
CAGGAGGCGGCGGAAGCTCACCTAGTGTCTCTCTTCGAGGACGCAAACCT
CTGCGCACTACACGCCAAGCGAGTGACGATAATGGTCCGGGACTTCCAGC
TAGCTCGCAGGATTCGAGGGCAAAGCCGAGAGTGA