mRNA_Ecto-sp13_S_contig9618.21242.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9618.21242.1
Unique NamemRNA_Ecto-sp13_S_contig9618.21242.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9618.21242.1 vs. uniprot
Match: A0A6H5K6H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H5_9PHAE)

HSP 1 Score: 525 bits (1352), Expect = 1.450e-183
Identity = 313/384 (81.51%), Postives = 322/384 (83.85%), Query Frame = 1 
Query:    7 PKKITVFRSARGTDFRPALALGTADSGNXXXXXXXXXXXXXXXK----------STIKAVEGEGPCGGGETLHTTVVSGNDELGGEAKSSPSIMELFDTNDVVAAAREQAAARDSNKTATAA------ADVAPEASPAAAMARRDSLGRGRSKRFSTDSLRPSSGAWDRRNGLPAHRKTASFTGGVPRAGRGSGGSVGGAERHGYLSFSEVQVDEEDDTDDYLGHXXXXXXXXXXXKFGREMPHRRRKKRERAWKLFLAVMQEHGLRVRKYHRHGKGWAHRIVKYDPTLPGLRWKSSKWWDSGGGQVRCLAINPV----------CLHLGTIGFEASLETDAVVFYLAMDSLLDTRCGVSHDSSVGGTGSHEASGPRLPGIPAA 1080
            P++ +  RS RGTD RPALALGT DSGNXXXXXXXXXXXXXXX           STI AVEGEGPCGGGETLHTTVVSGNDELGGEAKSSPSIMELFDTNDVVAAAREQAAAR                D APEASPAAAMARR SLG+GRSKRF TDSLRPSSG WD RNGLPAH+K ASF+GGVPRAGR SGGSVGGAERHGYLSFSEVQVDEEDDTDD LGHXXXXXXXXXXX FGREMPHRRRKKRERAWKLFLAVMQEHGLRVRKYHRHGKGWAHRIVKYDP LPGLRWKSSKWWDSGGGQ+    +  V          CLHLGTIGFEASLETDAVVFYLAMDSLLDTRCGVS+DSSVG TG HEASGPRLPGIPAA
Sbjct:   80 PRRESCSRSGRGTDCRPALALGTVDSGNXXXXXXXXXXXXXXXXXXXXXXXXXXSTITAVEGEGPCGGGETLHTTVVSGNDELGGEAKSSPSIMELFDTNDVVAAAREQAAARXXXXXXXXXXXXXXXTDGAPEASPAAAMARRHSLGQGRSKRFPTDSLRPSSGVWDHRNGLPAHKKAASFSGGVPRAGRESGGSVGGAERHGYLSFSEVQVDEEDDTDDRLGHXXXXXXXXXXXXFGREMPHRRRKKRERAWKLFLAVMQEHGLRVRKYHRHGKGWAHRIVKYDPNLPGLRWKSSKWWDSGGGQIPLRDVLDVERRGKVVWVKCLHLGTIGFEASLETDAVVFYLAMDSLLDTRCGVSYDSSVGATGGHEASGPRLPGIPAA 463
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BLAST of mRNA_Ecto-sp13_S_contig9618.21242.1 vs. uniprot
Match: D7FS79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS79_ECTSI)

HSP 1 Score: 328 bits (840), Expect = 3.160e-109
Identity = 188/288 (65.28%), Postives = 195/288 (67.71%), Query Frame = 1 
Query:  256 MELFDTNDVVAAAREQAAARDSNKTATAAADVAP---EASPAAAMARRDSLGRGRSKRFSTDSLRPSSGAWDRRNGLPAHRKTASFTGGVPRAGRGSGGSVGGAERHGYLSFSEVQVDEEDDTDDYLGHXXXXXXXXXXXKFGREMPHRRRKKRERAWKLFLAVMQEHGLRVRKYHRHGKGWAHRIVKYDPTLPGLRWKSSKWWDSGGGQVRCLAINPV----------CLHLGTIGFEASLETDAVVFYLAMDSLLDTRCGVSHDSSVGGTGSHEASGPRLPGIPAA 1080
            MELFDTNDVVAAAREQ                     EASPAAAMARR SLGRGRSKR+STDSLRPSSGAWD RNGLPAH+K ASF+GGVPRAGRGSGGSVGGAERHGYLSFSEVQ                                                  EHGLRVRKYHRHGKGWAHRIVKYDPTLPGLRWKSSKWWDSGGGQ+    +  V          CLHLGTIGFEASLETDAVVFYLAMDSLLDTRCGVS++SSVGGTG H ASGPRL GIPAA
Sbjct:    1 MELFDTNDVVAAAREQXXXXXXXXXXXXXXXXXXXXXEASPAAAMARRHSLGRGRSKRYSTDSLRPSSGAWDHRNGLPAHKKAASFSGGVPRAGRGSGGSVGGAERHGYLSFSEVQ--------------------------------------------------EHGLRVRKYHRHGKGWAHRIVKYDPTLPGLRWKSSKWWDSGGGQIPLRDVLDVERRGKVVWVKCLHLGTIGFEASLETDAVVFYLAMDSLLDTRCGVSNNSSVGGTGGHGASGPRLSGIPAA 238
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9618.21242.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K6H5_9PHAE1.450e-18381.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FS79_ECTSI3.160e-10965.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9618contigEcto-sp13_S_contig9618:2704..4511 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1083
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_000860.1
Cds size1083
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464226.8942454-CDS-Ecto-sp13_S_contig9618:2703..28831681464226.8942454-CDS-Ecto-sp13_S_contig9618:2703..2883Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9618 2704..2883 -
1681464226.9055917-CDS-Ecto-sp13_S_contig9618:3239..35481681464226.9055917-CDS-Ecto-sp13_S_contig9618:3239..3548Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9618 3240..3548 -
1681464226.9165978-CDS-Ecto-sp13_S_contig9618:3917..45111681464226.9165978-CDS-Ecto-sp13_S_contig9618:3917..4511Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9618 3918..4511 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9618.21242.1prot_Ecto-sp13_S_contig9618.21242.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9618 2704..4511 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9618.21242.1

>prot_Ecto-sp13_S_contig9618.21242.1 ID=prot_Ecto-sp13_S_contig9618.21242.1|Name=mRNA_Ecto-sp13_S_contig9618.21242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=361bp
LLPKKITVFRSARGTDFRPALALGTADSGNNNNNNNNNNSSINNNKSTIK
AVEGEGPCGGGETLHTTVVSGNDELGGEAKSSPSIMELFDTNDVVAAARE
QAAARDSNKTATAAADVAPEASPAAAMARRDSLGRGRSKRFSTDSLRPSS
GAWDRRNGLPAHRKTASFTGGVPRAGRGSGGSVGGAERHGYLSFSEVQVD
EEDDTDDYLGHNSSSTASSSSSKFGREMPHRRRKKRERAWKLFLAVMQEH
GLRVRKYHRHGKGWAHRIVKYDPTLPGLRWKSSKWWDSGGGQVRCLAINP
VCLHLGTIGFEASLETDAVVFYLAMDSLLDTRCGVSHDSSVGGTGSHEAS
GPRLPGIPAA*
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mRNA from alignment at Ecto-sp13_S_contig9618:2704..4511-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9618.21242.1 ID=mRNA_Ecto-sp13_S_contig9618.21242.1|Name=mRNA_Ecto-sp13_S_contig9618.21242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1808bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9618:2704..4511- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTACCAAAAAAAATCACCGTTTTCAGGAGCGCAAGAGGAACCGACTT
TCGCCCAGCGCTGGCGCTTGGCACAGCCGACAGCGGCAACAACAACAACA
ACAACAACAACAACAACAGCAGCATCAACAACAACAAGTCAACCATAAAG
GCGGTGGAAGGGGAGGGGCCCTGCGGAGGGGGAGAGACCCTGCACACTAC
GGTGGTCTCGGGCAACGACGAGCTTGGAGGAGAGGCCAAGAGCTCCCCTT
CCATCATGGAGCTCTTCGACACCAATGACGTCGTCGCCGCCGCGAGAGAG
CAGGCCGCGGCGCGCGACAGCAACAAAACCGCTACCGCCGCCGCCGACGT
TGCCCCGGAGGCGTCGCCGGCGGCGGCGATGGCGAGGCGCGACAGCCTAG
GCCGCGGCAGGAGCAAAAGGTTCTCCACGGATTCGCTGAGGCCGTCGTCG
GGGGCGTGGGACCGCCGGAACGGGTTGCCCGCCCACAGAAAGACGGCGTC
GTTCACTGGGGGAGTCCCCCGCGCCGGGAGGGGTTCCGGGGGCTCCGTGG
GGGGCGCGGAACGGCATGGGTACCTCAGCTTTTCGGAGGTACAGGTGAGG
CGAATGGGAGGGTTGGGTGACCCGGGGGGTGAGCGCAAGACGGCGAAGCT
AGCGTACAACGGGGACCCCAGATCTCGTCCATTGGCGCTACGTTCCCGCA
TCCAGACCGCGAAGCGCCATCCCCAAACGCCCAGACACCCCTTCTTGCAC
TTCCCGTATTGATCACCACTTCTACTTCGAAATCATTCATTTGTTTTGAA
GTCGTAGTCGCTTGTTAGTGGTCGGGTGCAGTTGTTGCTTCTTTTTTTTA
GTAGGTGTTTCCGTCTAGCTGAACTAAGTATGTACTTTTGTTTTCTAAAG
TCATGTCGTTGTCGCTTGTTCGCGGTCGGGTGCTGATGCTTCCGTTTTTT
TTCTGTAAACTAGGTGGACGAGGAAGACGACACCGATGATTACCTCGGCC
ACAACAGCAGTAGCACCGCGAGCAGCAGCAGCAGCAAGTTCGGGCGAGAG
ATGCCGCACCGAAGGCGCAAGAAGCGCGAACGCGCGTGGAAGCTTTTTTT
GGCGGTCATGCAGGAGCACGGGCTGAGGGTCCGGAAGTACCATCGCCACG
GGAAAGGGTGGGCGCACCGTATAGTCAAGTACGACCCGACCTTGCCGGGC
CTGCGATGGAAGAGCAGCAAGTGGTGGGACTCCGGCGGGGGGCAGGTGCG
GTGTCTGGCTATCAATCCGGTTGTCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCAAGTGCTTGCACCTCGGCACCATCG
GCTTCGAGGCATCCCTTGAGACGGACGCGGTAGTCTTCTACCTGGCGATG
GACTCGTTGCTCGACACCCGCTGCGGGGTCTCACACGACAGCAGCGTCGG
CGGTACCGGAAGCCACGAGGCGTCAGGCCCTCGCCTTCCGGGAATTCCGG
CGGCGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9618:2704..4511-

>mRNA_Ecto-sp13_S_contig9618.21242.1 ID=mRNA_Ecto-sp13_S_contig9618.21242.1|Name=mRNA_Ecto-sp13_S_contig9618.21242.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1083bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9618:2704..4511- (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCTACCAAAAAAAATCACCGTTTTCAGGAGCGCAAGAGGAACCGACTT
TCGCCCAGCGCTGGCGCTTGGCACAGCCGACAGCGGCAACAACAACAACA
ACAACAACAACAACAACAGCAGCATCAACAACAACAAGTCAACCATAAAG
GCGGTGGAAGGGGAGGGGCCCTGCGGAGGGGGAGAGACCCTGCACACTAC
GGTGGTCTCGGGCAACGACGAGCTTGGAGGAGAGGCCAAGAGCTCCCCTT
CCATCATGGAGCTCTTCGACACCAATGACGTCGTCGCCGCCGCGAGAGAG
CAGGCCGCGGCGCGCGACAGCAACAAAACCGCTACCGCCGCCGCCGACGT
TGCCCCGGAGGCGTCGCCGGCGGCGGCGATGGCGAGGCGCGACAGCCTAG
GCCGCGGCAGGAGCAAAAGGTTCTCCACGGATTCGCTGAGGCCGTCGTCG
GGGGCGTGGGACCGCCGGAACGGGTTGCCCGCCCACAGAAAGACGGCGTC
GTTCACTGGGGGAGTCCCCCGCGCCGGGAGGGGTTCCGGGGGCTCCGTGG
GGGGCGCGGAACGGCATGGGTACCTCAGCTTTTCGGAGGTACAGGTGGAC
GAGGAAGACGACACCGATGATTACCTCGGCCACAACAGCAGTAGCACCGC
GAGCAGCAGCAGCAGCAAGTTCGGGCGAGAGATGCCGCACCGAAGGCGCA
AGAAGCGCGAACGCGCGTGGAAGCTTTTTTTGGCGGTCATGCAGGAGCAC
GGGCTGAGGGTCCGGAAGTACCATCGCCACGGGAAAGGGTGGGCGCACCG
TATAGTCAAGTACGACCCGACCTTGCCGGGCCTGCGATGGAAGAGCAGCA
AGTGGTGGGACTCCGGCGGGGGGCAGGTGCGGTGTCTGGCTATCAATCCG
GTTTGCTTGCACCTCGGCACCATCGGCTTCGAGGCATCCCTTGAGACGGA
CGCGGTAGTCTTCTACCTGGCGATGGACTCGTTGCTCGACACCCGCTGCG
GGGTCTCACACGACAGCAGCGTCGGCGGTACCGGAAGCCACGAGGCGTCA
GGCCCTCGCCTTCCGGGAATTCCGGCGGCGTAA
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