mRNA_Ecto-sp13_S_contig96159.21237.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig96159.21237.1
Unique NamemRNA_Ecto-sp13_S_contig96159.21237.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig96159.21237.1 vs. uniprot
Match: D7FY39_ECTSI (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY39_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.250e-20
Identity = 47/48 (97.92%), Postives = 47/48 (97.92%), Query Frame = 1 
Query:   16 METPRDEVQKACVLGSGAFGTALAQLMARKGVPTTAWTRSQDVTDLIT 159
            METPRDE QKACVLGSGAFGTALAQLMARKGVPTTAWTRSQDVTDLIT
Sbjct:    1 METPRDEAQKACVLGSGAFGTALAQLMARKGVPTTAWTRSQDVTDLIT 48
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BLAST of mRNA_Ecto-sp13_S_contig96159.21237.1 vs. uniprot
Match: A0A836CAJ5_9STRA (Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAJ5_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.050e-7
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:   37 VQKACVLGSGAFGTALAQLMARKGVPTTAWTRSQDVTDLI 156
            +QKAC+LG+GAFGTALAQL+AR GV  T WTRS+D   +I
Sbjct:   33 LQKACILGAGAFGTALAQLLARNGVAATVWTRSEDTMAMI 72
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BLAST of mRNA_Ecto-sp13_S_contig96159.21237.1 vs. uniprot
Match: UPI0003B53B7F (NAD(P)-dependent glycerol-3-phosphate dehydrogenase n=1 Tax=Paucidesulfovibrio longus TaxID=889 RepID=UPI0003B53B7F)

HSP 1 Score: 52.8 bits (125), Expect = 3.480e-5
Identity = 30/77 (38.96%), Postives = 42/77 (54.55%), Query Frame = 1 
Query:   16 METPRDEVQKACVLGSGAFGTALAQLMARKGVPTTAWTRSQDVTDLITRF---EVFSVGFALTPCTTKLPTRAAALQ 237
            M T     ++  VLG+GA+GT LA ++AR GVPTT W R  D+ + +      +VF  G AL+P        A AL+
Sbjct:    1 MNTENSTAKRVTVLGAGAWGTTLADMLARNGVPTTLWVRETDLAERMRAELVNDVFLPGVALSPALNVESDPATALR 77
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BLAST of mRNA_Ecto-sp13_S_contig96159.21237.1 vs. uniprot
Match: A0A2V7KM91_9BACT (NAD_Gly3P_dh_N domain-containing protein (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7KM91_9BACT)

HSP 1 Score: 49.3 bits (116), Expect = 3.780e-5
Identity = 27/55 (49.09%), Postives = 33/55 (60.00%), Query Frame = 1 
Query:   43 KACVLGSGAFGTALAQLMARKGVPTTAWTRSQDVTDLITRF---EVFSVGFALTP 198
            K  V+G GA+GTALA L+ARKG   T W R  DV D + R    E+F  G +L P
Sbjct:    2 KIAVIGGGAWGTALADLLARKGEQVTMWAREPDVVDSVNRRHVNEMFLPGASLAP 56
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BLAST of mRNA_Ecto-sp13_S_contig96159.21237.1 vs. uniprot
Match: J3F2J4_ACTNH (NADP oxidoreductase coenzyme F420-dependent n=1 Tax=Actinomyces naeslundii (strain ATCC 12104 / DSM 43013 / CCUG 2238 / JCM 8349 / NCTC 10301 / Howell 279) TaxID=1115803 RepID=J3F2J4_ACTNH)

HSP 1 Score: 49.7 bits (117), Expect = 5.740e-5
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:    1 GLSLAMETPRDEVQKACVLGSGAFGTALAQLMARKGVPTTAWTRSQDVTDLI 156
            G+  A  TP   V++A V+GSGA+GT  A L+A+ G PTT W R ++V D I
Sbjct:    3 GVERAANTP---VRRAAVIGSGAWGTTFASLLAQAGTPTTIWARRREVADEI 51
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BLAST of mRNA_Ecto-sp13_S_contig96159.21237.1 vs. uniprot
Match: A0A2V7R3J2_9BACT (Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7R3J2_9BACT)

HSP 1 Score: 51.6 bits (122), Expect = 8.730e-5
Identity = 30/68 (44.12%), Postives = 39/68 (57.35%), Query Frame = 1 
Query:   43 KACVLGSGAFGTALAQLMARKGVPTTAWTRSQDVTDLITRF---EVFSVGFALTPCTTKLPTRAAALQ 237
            K  V+G GA+GTALA L+ARKG   T W R  +V D + R    E+F  G +L P  T     AAA++
Sbjct:    2 KVAVVGGGAWGTALADLLARKGEQVTIWAREAEVVDSVNRRHVNEMFLPGASLAPALTAEGDLAAAIR 69
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig96159.21237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FY39_ECTSI1.250e-2097.92Glycerol-3-phosphate dehydrogenase [NAD(+)] n=2 Ta... [more]
A0A836CAJ5_9STRA1.050e-767.50Glycerol-3-phosphate dehydrogenase [NAD(+)] n=1 Ta... [more]
UPI0003B53B7F3.480e-538.96NAD(P)-dependent glycerol-3-phosphate dehydrogenas... [more]
A0A2V7KM91_9BACT3.780e-549.09NAD_Gly3P_dh_N domain-containing protein (Fragment... [more]
J3F2J4_ACTNH5.740e-548.08NADP oxidoreductase coenzyme F420-dependent n=1 Ta... [more]
A0A2V7R3J2_9BACT8.730e-544.12Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig96159contigEcto-sp13_S_contig96159:10..468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size460
Hectar predicted targeting categoryother localisation
Exons1
Cds size444
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464226.6914754-UTR-Ecto-sp13_S_contig96159:9..241681464226.6914754-UTR-Ecto-sp13_S_contig96159:9..24Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig96159 10..24 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464226.7047231-CDS-Ecto-sp13_S_contig96159:24..4681681464226.7047231-CDS-Ecto-sp13_S_contig96159:24..468Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig96159 25..468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig96159.21237.1prot_Ecto-sp13_S_contig96159.21237.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig96159 25..468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig96159.21237.1

>prot_Ecto-sp13_S_contig96159.21237.1 ID=prot_Ecto-sp13_S_contig96159.21237.1|Name=mRNA_Ecto-sp13_S_contig96159.21237.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
METPRDEVQKACVLGSGAFGTALAQLMARKGVPTTAWTRSQDVTDLITRF
EVFSVGFALTPCTTKLPTRAAALQRSIGRCLMQKVHTLHDLDVLYACSMT
MMAVVCKCKETTAPTQQCLFSWIMHTSSRKVHRTESLRIVGAVVYLPS
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mRNA from alignment at Ecto-sp13_S_contig96159:10..468+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig96159.21237.1 ID=mRNA_Ecto-sp13_S_contig96159.21237.1|Name=mRNA_Ecto-sp13_S_contig96159.21237.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig96159:10..468+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTTGTCACTGGCAATGGAGACTCCACGCGATGAGGTTCAAAAGGCATG
TGTGCTGGGGTCGGGAGCGTTCGGGACAGCCCTGGCACAGTTAATGGCAA
GAAAGGGGGTGCCGACAACAGCCTGGACACGATCTCAAGATGTCACAGAC
CTTATCACAAGGTTTGAAGTATTTTCTGTCGGATTTGCTCTCACTCCCTG
TACAACAAAGCTTCCTACAAGAGCAGCAGCCCTTCAGCGGAGTATCGGTC
GTTGCTTGATGCAAAAGGTGCATACGCTCCACGATCTGGACGTGTTGTAT
GCGTGCAGCATGACCATGATGGCGGTTGTTTGTAAGTGCAAAGAAACAAC
GGCTCCTACACAGCAGTGCCTGTTTTCATGGATTATGCATACCTCCTCGA
GAAAAGTCCATCGCACCGAGAGCCTGCGCATCGTAGGTGCTGTAGTTTAC
TTACCTTCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig96159:10..468+

>mRNA_Ecto-sp13_S_contig96159.21237.1 ID=mRNA_Ecto-sp13_S_contig96159.21237.1|Name=mRNA_Ecto-sp13_S_contig96159.21237.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig96159:10..468+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGACTCCACGCGATGAGGTTCAAAAGGCATGTGTGCTGGGGTCGGG
AGCGTTCGGGACAGCCCTGGCACAGTTAATGGCAAGAAAGGGGGTGCCGA
CAACAGCCTGGACACGATCTCAAGATGTCACAGACCTTATCACAAGGTTT
GAAGTATTTTCTGTCGGATTTGCTCTCACTCCCTGTACAACAAAGCTTCC
TACAAGAGCAGCAGCCCTTCAGCGGAGTATCGGTCGTTGCTTGATGCAAA
AGGTGCATACGCTCCACGATCTGGACGTGTTGTATGCGTGCAGCATGACC
ATGATGGCGGTTGTTTGTAAGTGCAAAGAAACAACGGCTCCTACACAGCA
GTGCCTGTTTTCATGGATTATGCATACCTCCTCGAGAAAAGTCCATCGCA
CCGAGAGCCTGCGCATCGTAGGTGCTGTAGTTTACTTACCTTCA
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