mRNA_Ecto-sp13_S_contig96135.21232.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig96135.21232.1
Unique NamemRNA_Ecto-sp13_S_contig96135.21232.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig96135.21232.1 vs. uniprot
Match: E6ZER6_ECTSI (Ribosomal protein L16 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZER6_ECTSI)

HSP 1 Score: 248 bits (634), Expect = 4.050e-83
Identity = 127/134 (94.78%), Postives = 131/134 (97.76%), Query Frame = 1 
Query:    1 QPKKTKYRKYFKTRKIPNNSTKTHKLKTLNCFALVATESTFLNGKQLEAARQNIRRKVKREGKLEISVFPDIAVSQKPSAARMGKGKGKVDHWIAALSAGKTIFLLYGVEAEQGIPALQAGANKLPIKSKIYQL 402
            QPKKTKYRKYFKTRKIPNNSTKTHKLKTLNCFAL+ATES FLNGKQLEAARQNIRRKVKREGKLEISVFPDIA SQK SAARMGKGKGKV+HWIAALSAGKTIFLLYGVEAEQGIPALQ+GANKLP+KSKIYQL
Sbjct:    4 QPKKTKYRKYFKTRKIPNNSTKTHKLKTLNCFALIATESGFLNGKQLEAARQNIRRKVKREGKLEISVFPDIAASQKASAARMGKGKGKVNHWIAALSAGKTIFLLYGVEAEQGIPALQSGANKLPVKSKIYQL 137
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BLAST of mRNA_Ecto-sp13_S_contig96135.21232.1 vs. uniprot
Match: A0A1I9LW99_9PHAE (Ribosomal protein L16 n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LW99_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 5.690e-74
Identity = 110/134 (82.09%), Postives = 127/134 (94.78%), Query Frame = 1 
Query:    1 QPKKTKYRKYFKTRKIPNNSTKTHKLKTLNCFALVATESTFLNGKQLEAARQNIRRKVKREGKLEISVFPDIAVSQKPSAARMGKGKGKVDHWIAALSAGKTIFLLYGVEAEQGIPALQAGANKLPIKSKIYQL 402
            QPKKTKYRKYFK R++PNNSTKTHKL+ LNCFALVA ES+FLNGKQ+EAARQNIRRKV R+GKLEI +FPDIA+S+K +AARMGKGKGKVDHW+A+LSAG+T+FLLYG++AEQGIPALQAGANKLP+K KIYQL
Sbjct:    4 QPKKTKYRKYFKPRQMPNNSTKTHKLQDLNCFALVAMESSFLNGKQIEAARQNIRRKVNRKGKLEIIIFPDIAISRKATAARMGKGKGKVDHWVASLSAGQTVFLLYGIDAEQGIPALQAGANKLPMKLKIYQL 137
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BLAST of mRNA_Ecto-sp13_S_contig96135.21232.1 vs. uniprot
Match: A0A089N0Z2_PETFA (Ribosomal protein L16 n=4 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A089N0Z2_PETFA)

HSP 1 Score: 216 bits (549), Expect = 3.680e-70
Identity = 109/134 (81.34%), Postives = 123/134 (91.79%), Query Frame = 1 
Query:    1 QPKKTKYRKYFKTRKIPNNSTKTHKLKTLNCFALVATESTFLNGKQLEAARQNIRRKVKREGKLEISVFPDIAVSQKPSAARMGKGKGKVDHWIAALSAGKTIFLLYGVEAEQGIPALQAGANKLPIKSKIYQL 402
            QPKKTKYRKYFK R +P +STKT KLK LN FAL+A ES FLNGKQ+EAARQNIRRKVKREGKLEI VFPDIA+S+K SAARMGKGKGKVDHW+AALSAG+T+FLLYGV+AEQGIPAL++GANKLP+K KIY+L
Sbjct:    4 QPKKTKYRKYFKPRGLPKSSTKTQKLKELNYFALIAMESGFLNGKQIEAARQNIRRKVKREGKLEILVFPDIAISRKASAARMGKGKGKVDHWVAALSAGRTVFLLYGVDAEQGIPALRSGANKLPMKLKIYKL 137
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BLAST of mRNA_Ecto-sp13_S_contig96135.21232.1 vs. uniprot
Match: A0A8F0K1B0_9PHAE (Ribosomal protein L16 n=1 Tax=Analipus japonicus TaxID=31333 RepID=A0A8F0K1B0_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 7.430e-70
Identity = 104/134 (77.61%), Postives = 123/134 (91.79%), Query Frame = 1 
Query:    1 QPKKTKYRKYFKTRKIPNNSTKTHKLKTLNCFALVATESTFLNGKQLEAARQNIRRKVKREGKLEISVFPDIAVSQKPSAARMGKGKGKVDHWIAALSAGKTIFLLYGVEAEQGIPALQAGANKLPIKSKIYQL 402
            QPKKTKYRKYFK R++P+NST+T +L  LNCFAL+ TES +LNG+Q+EAARQNIRRKVKREGKLEI VFPDI +S+K SAARMGKGKGK+DHW+AAL AG+TIFLLYG++AEQGIPALQ+GANKLP+K KIY+L
Sbjct:    4 QPKKTKYRKYFKPRRLPSNSTQTQRLGELNCFALITTESGYLNGRQIEAARQNIRRKVKREGKLEIPVFPDIPISRKASAARMGKGKGKIDHWVAALPAGRTIFLLYGIDAEQGIPALQSGANKLPLKLKIYKL 137
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BLAST of mRNA_Ecto-sp13_S_contig96135.21232.1 vs. uniprot
Match: A0A0U1XD57_9PHAE (Ribosomal protein L16 n=1 Tax=Colpomenia peregrina TaxID=27965 RepID=A0A0U1XD57_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 2.130e-69
Identity = 110/134 (82.09%), Postives = 120/134 (89.55%), Query Frame = 1 
Query:    1 QPKKTKYRKYFKTRKIPNNSTKTHKLKTLNCFALVATESTFLNGKQLEAARQNIRRKVKREGKLEISVFPDIAVSQKPSAARMGKGKGKVDHWIAALSAGKTIFLLYGVEAEQGIPALQAGANKLPIKSKIYQL 402
            QPKKTKYRKYFK R+IP NSTKT KLK LN FAL+A ES FL GKQ+EAARQNIRRKVKREGKLEI VFPDIAVS+K SAARMGKGKGKVDHWIA L+AG T+FLLYGVEAE GIPAL++GANKLPIK KI++L
Sbjct:    4 QPKKTKYRKYFKPRRIPKNSTKTQKLKELNYFALIAMESGFLTGKQIEAARQNIRRKVKREGKLEILVFPDIAVSKKASAARMGKGKGKVDHWIATLAAGNTVFLLYGVEAEHGIPALKSGANKLPIKLKIFKL 137
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BLAST of mRNA_Ecto-sp13_S_contig96135.21232.1 vs. uniprot
Match: A0A0U2M402_9PHAE (Ribosomal protein L16 n=18 Tax=Laminariales TaxID=2886 RepID=A0A0U2M402_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 2.830e-69
Identity = 104/134 (77.61%), Postives = 121/134 (90.30%), Query Frame = 1 
Query:    1 QPKKTKYRKYFKTRKIPNNSTKTHKLKTLNCFALVATESTFLNGKQLEAARQNIRRKVKREGKLEISVFPDIAVSQKPSAARMGKGKGKVDHWIAALSAGKTIFLLYGVEAEQGIPALQAGANKLPIKSKIYQL 402
            QPKKTKYRKYFK R +PN STKTHKL  LNCFA++  ES +LNG+Q+EAARQNIRRKVKREGKLEI +FPDIA+S+K SAARMGKGKGKVDHWIA++SAG+ +FLLYG++AEQGIPAL +GANKLP+K KIYQL
Sbjct:    2 QPKKTKYRKYFKPRGLPNTSTKTHKLTELNCFAVILMESGYLNGRQIEAARQNIRRKVKREGKLEILIFPDIAISRKASAARMGKGKGKVDHWIASVSAGQNLFLLYGIDAEQGIPALHSGANKLPLKVKIYQL 135
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BLAST of mRNA_Ecto-sp13_S_contig96135.21232.1 vs. uniprot
Match: A0A4D6E560_9PHAE (Ribosomal protein L16 n=4 Tax=Laminariaceae TaxID=33636 RepID=A0A4D6E560_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 4.290e-69
Identity = 104/134 (77.61%), Postives = 122/134 (91.04%), Query Frame = 1 
Query:    1 QPKKTKYRKYFKTRKIPNNSTKTHKLKTLNCFALVATESTFLNGKQLEAARQNIRRKVKREGKLEISVFPDIAVSQKPSAARMGKGKGKVDHWIAALSAGKTIFLLYGVEAEQGIPALQAGANKLPIKSKIYQL 402
            QPKKTKYRKYFK R +PN STKTHKL  L CFAL+A ES++LN +Q+EAARQNIRRKVKREGKLEI VFPDIA+S+K SAARMGKGKGKV+HWIA+++AG+T+FLLYG++AEQGIPAL +GANKLP+K KIYQL
Sbjct:    4 QPKKTKYRKYFKPRGLPNTSTKTHKLTELTCFALIAMESSYLNSRQIEAARQNIRRKVKREGKLEILVFPDIAISRKASAARMGKGKGKVNHWIASITAGQTVFLLYGIDAEQGIPALHSGANKLPLKVKIYQL 137
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BLAST of mRNA_Ecto-sp13_S_contig96135.21232.1 vs. uniprot
Match: A0A3G5FPM2_9PHAE (Ribosomal protein L16 n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A3G5FPM2_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 1.750e-68
Identity = 105/134 (78.36%), Postives = 120/134 (89.55%), Query Frame = 1 
Query:    1 QPKKTKYRKYFKTRKIPNNSTKTHKLKTLNCFALVATESTFLNGKQLEAARQNIRRKVKREGKLEISVFPDIAVSQKPSAARMGKGKGKVDHWIAALSAGKTIFLLYGVEAEQGIPALQAGANKLPIKSKIYQL 402
            QPKKTKYRKYFK R+ P N  +THKL+ LN FAL+A ES FLNG+Q+EAARQNIRRKVKREGKLEI VFPDIA+S+K SAARMGKGKGKVDHW++++ AGKTIF LYG+EAEQG+PALQ+GANKLPIK KIYQL
Sbjct:    4 QPKKTKYRKYFKPRRGPGNLNQTHKLEELNFFALIAMESGFLNGRQIEAARQNIRRKVKREGKLEIKVFPDIAISRKASAARMGKGKGKVDHWVSSIPAGKTIFTLYGIEAEQGVPALQSGANKLPIKLKIYQL 137
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BLAST of mRNA_Ecto-sp13_S_contig96135.21232.1 vs. uniprot
Match: W5RG04_COSCS (Ribosomal protein L16 n=1 Tax=Costaria costata TaxID=2872 RepID=W5RG04_COSCS)

HSP 1 Score: 209 bits (532), Expect = 1.340e-67
Identity = 101/134 (75.37%), Postives = 119/134 (88.81%), Query Frame = 1 
Query:    1 QPKKTKYRKYFKTRKIPNNSTKTHKLKTLNCFALVATESTFLNGKQLEAARQNIRRKVKREGKLEISVFPDIAVSQKPSAARMGKGKGKVDHWIAALSAGKTIFLLYGVEAEQGIPALQAGANKLPIKSKIYQL 402
            QPKKTKYRKYFK R +PN STKTHKL  L CFA++  ES ++NG+Q+EAARQNIRRKVKREGKL+IS+FPDIA+S+K SAARMGKGKGKVDHW+ ++SAG+T+F L+GV AEQGIPAL +GANKLPIK KIYQL
Sbjct:    2 QPKKTKYRKYFKPRGLPNTSTKTHKLSELTCFAVITLESGYVNGRQIEAARQNIRRKVKREGKLQISIFPDIAISRKASAARMGKGKGKVDHWVTSISAGQTLFTLFGVSAEQGIPALHSGANKLPIKVKIYQL 135
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BLAST of mRNA_Ecto-sp13_S_contig96135.21232.1 vs. uniprot
Match: D0IPU3_SACAN (Ribosomal protein L16 n=6 Tax=Laminariales TaxID=2886 RepID=D0IPU3_SACAN)

HSP 1 Score: 208 bits (530), Expect = 2.710e-67
Identity = 102/134 (76.12%), Postives = 119/134 (88.81%), Query Frame = 1 
Query:    1 QPKKTKYRKYFKTRKIPNNSTKTHKLKTLNCFALVATESTFLNGKQLEAARQNIRRKVKREGKLEISVFPDIAVSQKPSAARMGKGKGKVDHWIAALSAGKTIFLLYGVEAEQGIPALQAGANKLPIKSKIYQL 402
            QPKKTKYRKYFK R +PN S KTHKL  L CFA++A  S +LNG+Q+E+ARQNIRRKVKREGKLEI +FPDIA+S K SAARMGKGKGKVDHWIA++SAG+T+FLLYG++AEQGIPAL +GANKLP+K KIYQL
Sbjct:    2 QPKKTKYRKYFKPRGLPNTSGKTHKLTELTCFAVIAMGSGYLNGRQIESARQNIRRKVKREGKLEILIFPDIAISHKASAARMGKGKGKVDHWIASISAGQTLFLLYGIDAEQGIPALHSGANKLPLKVKIYQL 135
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig96135.21232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
E6ZER6_ECTSI4.050e-8394.78Ribosomal protein L16 n=2 Tax=Ectocarpus siliculos... [more]
A0A1I9LW99_9PHAE5.690e-7482.09Ribosomal protein L16 n=1 Tax=Pleurocladia lacustr... [more]
A0A089N0Z2_PETFA3.680e-7081.34Ribosomal protein L16 n=4 Tax=Scytosiphonaceae Tax... [more]
A0A8F0K1B0_9PHAE7.430e-7077.61Ribosomal protein L16 n=1 Tax=Analipus japonicus T... [more]
A0A0U1XD57_9PHAE2.130e-6982.09Ribosomal protein L16 n=1 Tax=Colpomenia peregrina... [more]
A0A0U2M402_9PHAE2.830e-6977.61Ribosomal protein L16 n=18 Tax=Laminariales TaxID=... [more]
A0A4D6E560_9PHAE4.290e-6977.61Ribosomal protein L16 n=4 Tax=Laminariaceae TaxID=... [more]
A0A3G5FPM2_9PHAE1.750e-6878.36Ribosomal protein L16 n=1 Tax=Cladosiphon okamuran... [more]
W5RG04_COSCS1.340e-6775.37Ribosomal protein L16 n=1 Tax=Costaria costata Tax... [more]
D0IPU3_SACAN2.710e-6776.12Ribosomal protein L16 n=6 Tax=Laminariales TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig96135contigEcto-sp13_S_contig96135:3..407 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start0
Seed ortholog score108.6
Seed ortholog evalue2.3e-21
Seed eggNOG ortholog1035191.HMPREF0185_00734
Preferred namerplP
Model size405
KEGG koko:K02878
KEGG Pathwayko03010,map03010
KEGG ModuleM00178
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005886,GO:0006412,GO:0006518,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015934,GO:0016020,GO:0016043,GO:0019538,GO:0019843,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0040007,GO:0042254,GO:0042255,GO:0042273,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0065003,GO:0070925,GO:0071704,GO:0071826,GO:0071840,GO:0071944,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Exons1
EggNOG free text desc.Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
EggNOG OGs1RA0Z@1224,2KGAF@204458,2U710@28211,COG0197@1,COG0197@2
Cds size405
COG Functional cat.J
Best tax levelCaulobacterales
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464226.504845-CDS-Ecto-sp13_S_contig96135:2..4071681464226.504845-CDS-Ecto-sp13_S_contig96135:2..407Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig96135 3..407 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig96135.21232.1prot_Ecto-sp13_S_contig96135.21232.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig96135 3..407 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig96135.21232.1

>prot_Ecto-sp13_S_contig96135.21232.1 ID=prot_Ecto-sp13_S_contig96135.21232.1|Name=mRNA_Ecto-sp13_S_contig96135.21232.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
QPKKTKYRKYFKTRKIPNNSTKTHKLKTLNCFALVATESTFLNGKQLEAA
RQNIRRKVKREGKLEISVFPDIAVSQKPSAARMGKGKGKVDHWIAALSAG
KTIFLLYGVEAEQGIPALQAGANKLPIKSKIYQL*
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mRNA from alignment at Ecto-sp13_S_contig96135:3..407+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig96135.21232.1 ID=mRNA_Ecto-sp13_S_contig96135.21232.1|Name=mRNA_Ecto-sp13_S_contig96135.21232.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig96135:3..407+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAACCTAAAAAAACCAAGTATCGTAAATATTTTAAAACTCGAAAAATACC
GAATAATTCGACAAAAACACATAAATTAAAAACTTTAAATTGCTTTGCTT
TAGTTGCAACAGAATCTACTTTTTTAAACGGAAAACAACTAGAAGCGGCA
CGCCAAAATATTAGGCGTAAAGTTAAACGAGAAGGTAAACTCGAAATATC
TGTTTTCCCTGATATTGCTGTAAGTCAAAAACCCTCAGCAGCTCGTATGG
GAAAGGGAAAAGGGAAAGTAGATCATTGGATCGCTGCTTTATCCGCGGGT
AAAACTATATTTTTATTGTATGGCGTAGAAGCTGAACAGGGTATTCCAGC
TTTACAAGCCGGTGCGAATAAACTACCAATAAAATCAAAAATTTATCAAC
TTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig96135:3..407+

>mRNA_Ecto-sp13_S_contig96135.21232.1 ID=mRNA_Ecto-sp13_S_contig96135.21232.1|Name=mRNA_Ecto-sp13_S_contig96135.21232.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig96135:3..407+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAACCTAAAAAAACCAAGTATCGTAAATATTTTAAAACTCGAAAAATACC
GAATAATTCGACAAAAACACATAAATTAAAAACTTTAAATTGCTTTGCTT
TAGTTGCAACAGAATCTACTTTTTTAAACGGAAAACAACTAGAAGCGGCA
CGCCAAAATATTAGGCGTAAAGTTAAACGAGAAGGTAAACTCGAAATATC
TGTTTTCCCTGATATTGCTGTAAGTCAAAAACCCTCAGCAGCTCGTATGG
GAAAGGGAAAAGGGAAAGTAGATCATTGGATCGCTGCTTTATCCGCGGGT
AAAACTATATTTTTATTGTATGGCGTAGAAGCTGAACAGGGTATTCCAGC
TTTACAAGCCGGTGCGAATAAACTACCAATAAAATCAAAAATTTATCAAC
TTTAA
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