mRNA_Ecto-sp13_S_contig96116.21229.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig96116.21229.1
Unique NamemRNA_Ecto-sp13_S_contig96116.21229.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig96116.21229.1 vs. uniprot
Match: D7FW53_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW53_ECTSI)

HSP 1 Score: 107 bits (266), Expect = 1.650e-25
Identity = 58/61 (95.08%), Postives = 60/61 (98.36%), Query Frame = 1 
Query:   10 EGEKTRQEILNDIIARSKERKLEKARGKEEQESERERLDEGMGELLSMLDQRPAKSQGNAA 192
            +GEKTRQEILNDIIARSKERKLEKARGKEEQESERERLDEGMGELLSMLDQRPAK +GNAA
Sbjct:  168 QGEKTRQEILNDIIARSKERKLEKARGKEEQESERERLDEGMGELLSMLDQRPAKGEGNAA 228
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BLAST of mRNA_Ecto-sp13_S_contig96116.21229.1 vs. uniprot
Match: A0A836CJL6_9STRA (Nucleolar protein 14 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJL6_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 2.340e-7
Identity = 29/59 (49.15%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 GPAEGEKTRQEILNDIIARSKERKLEKARGKEEQESERERLDEGMGELLSMLDQRPAKS 177
            G  +  K+R++I+ +IIA+SK RK +K+R K+EQE  RE+LD   G+LL ML+QRP ++
Sbjct:  174 GRPQDRKSRKDIMEEIIAKSKLRKADKSRSKDEQEETREKLDAEFGDLLGMLEQRPTRA 232
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig96116.21229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FW53_ECTSI1.650e-2595.08Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CJL6_9STRA2.340e-749.15Nucleolar protein 14 n=1 Tax=Tribonema minus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig96116contigEcto-sp13_S_contig96116:130..321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score109.0
Seed ortholog evalue8.3e-22
Seed eggNOG ortholog2880.D7FW53
Preferred nameNOP14
Model size192
KEGG koko:K14766
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000472,GO:0000478,GO:0000479,GO:0000480,GO:0000966,GO:0000967,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0019899,GO:0022613,GO:0030490,GO:0030515,GO:0030684,GO:0030686,GO:0030688,GO:0030689,GO:0030692,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034471,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Exons1
EggNOG free text desc.snoRNA binding
EggNOG OGsKOG2147@1,KOG2147@2759
Cds size192
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464226.3940606-CDS-Ecto-sp13_S_contig96116:129..3211681464226.3940606-CDS-Ecto-sp13_S_contig96116:129..321Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig96116 130..321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig96116.21229.1prot_Ecto-sp13_S_contig96116.21229.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig96116 130..321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig96116.21229.1

>prot_Ecto-sp13_S_contig96116.21229.1 ID=prot_Ecto-sp13_S_contig96116.21229.1|Name=mRNA_Ecto-sp13_S_contig96116.21229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=64bp
GPAEGEKTRQEILNDIIARSKERKLEKARGKEEQESERERLDEGMGELLS
MLDQRPAKSQGNAA
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mRNA from alignment at Ecto-sp13_S_contig96116:130..321-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig96116.21229.1 ID=mRNA_Ecto-sp13_S_contig96116.21229.1|Name=mRNA_Ecto-sp13_S_contig96116.21229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig96116:130..321- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCCCGCGGAGGGCGAGAAAACTCGCCAGGAAATCCTGAACGACATAAT
TGCGAGAAGCAAAGAGAGGAAACTCGAAAAGGCTCGCGGGAAGGAGGAGC
AAGAGAGCGAGCGTGAGCGGCTTGACGAGGGGATGGGAGAGCTACTCAGT
ATGCTCGATCAAAGGCCCGCGAAGAGCCAAGGCAACGCAGCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig96116:130..321-

>mRNA_Ecto-sp13_S_contig96116.21229.1 ID=mRNA_Ecto-sp13_S_contig96116.21229.1|Name=mRNA_Ecto-sp13_S_contig96116.21229.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=192bp|location=Sequence derived from alignment at Ecto-sp13_S_contig96116:130..321- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCCCGCGGAGGGCGAGAAAACTCGCCAGGAAATCCTGAACGACATAAT
TGCGAGAAGCAAAGAGAGGAAACTCGAAAAGGCTCGCGGGAAGGAGGAGC
AAGAGAGCGAGCGTGAGCGGCTTGACGAGGGGATGGGAGAGCTACTCAGT
ATGCTCGATCAAAGGCCCGCGAAGAGCCAAGGCAACGCAGCA
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