mRNA_Ecto-sp13_S_contig960.21216.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig960.21216.1
Unique NamemRNA_Ecto-sp13_S_contig960.21216.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig960.21216.1 vs. uniprot
Match: D7FW37_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW37_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 1.090e-38
Identity = 75/89 (84.27%), Postives = 77/89 (86.52%), Query Frame = 1 
Query:  643 MVHDPTQQFREASVFVNPRRRGGINYAVGSAEAKWAAEAATQPCREDTRACASVDQEAEVGAEMLRMMKMWSFSGGAGARAGQEAPVGK 909
            MVHDP QQF EA VFVNPRRRGGINYA  SAEAKWAA AA QPCREDTR   SVDQEAEVGAEMLRMMKMWSF+GGA A AGQEAPVG+
Sbjct:    1 MVHDPMQQFGEAPVFVNPRRRGGINYAADSAEAKWAAGAAAQPCREDTRGRMSVDQEAEVGAEMLRMMKMWSFNGGAEAHAGQEAPVGQ 89
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig960.21216.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FW37_ECTSI1.090e-3884.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig960contigEcto-sp13_S_contig960:568..5503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2494
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_003230.1
Cds size651
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464225.122865-UTR-Ecto-sp13_S_contig960:567..21431681464225.122865-UTR-Ecto-sp13_S_contig960:567..2143Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig960 568..2143 -
1681464225.1769898-UTR-Ecto-sp13_S_contig960:5236..55031681464225.1769898-UTR-Ecto-sp13_S_contig960:5236..5503Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig960 5237..5503 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464225.135746-CDS-Ecto-sp13_S_contig960:2143..22441681464225.135746-CDS-Ecto-sp13_S_contig960:2143..2244Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig960 2144..2244 -
1681464225.1475563-CDS-Ecto-sp13_S_contig960:2830..29811681464225.1475563-CDS-Ecto-sp13_S_contig960:2830..2981Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig960 2831..2981 -
1681464225.1606033-CDS-Ecto-sp13_S_contig960:4837..52361681464225.1606033-CDS-Ecto-sp13_S_contig960:4837..5236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig960 4838..5236 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig960.21216.1prot_Ecto-sp13_S_contig960.21216.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig960 2144..5236 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig960.21216.1

>prot_Ecto-sp13_S_contig960.21216.1 ID=prot_Ecto-sp13_S_contig960.21216.1|Name=mRNA_Ecto-sp13_S_contig960.21216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=217bp
MANYTTFSRNFDMPYLMLFDVRAERGRPTCCQGSYTTGSIILISFLGTAV
VRSEVQHARSIIRGGDWETTQSRGARVVTRLVAPPEDTRGTRESTLKTLG
AQGSFLLTRDTTGSTILLFGRREKIMVHDPTQQFREASVFVNPRRRGGIN
YAVGSAEAKWAAEAATQPCREDTRACASVDQEAEVGAEMLRMMKMWSFSG
GAGARAGQEAPVGKHS*
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mRNA from alignment at Ecto-sp13_S_contig960:568..5503-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig960.21216.1 ID=mRNA_Ecto-sp13_S_contig960.21216.1|Name=mRNA_Ecto-sp13_S_contig960.21216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4936bp|location=Sequence derived from alignment at Ecto-sp13_S_contig960:568..5503- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTGCCCTCCAATACATAGGGGTCCAACAAAAAAAATGCTCTTAAGACTT
TTGCAAAGCATTTCCTCGAATTATGCTATTTTTCTACGCCGATTATGGCA
CAGCACCTATACACAAGGCTATACGTATGCGTCTCTTTCTCGCAAGAAAT
ACTTTCATTTTTTTTGCTGGACCCCTATGTATATTGTAGTAGTAGTTGAG
GAGCCAATAAAGGTAATAGGCCCAACACTTAAACTTCCAAATAATAAATA
AGGTCCTTGTCTGGCCAATGGCCAATTATACGACTTTCTCCCGAAATTTC
GATATGCCTTATTTAATGCTTTTTGACGTCCGAGCAGAACGGGGAAGGCC
TACCTGCTGCCAGGGGAGCTACACGACCGGCTCGATCATTCTCATCTCGT
TCCTAGGAACGGCGGTTGTGCGTTCTGAAGTTCAGCACGCTCGCTCTATC
ATAAGGGGGGGAGACTGGGAAACCACACAAAGCAGAGGAGCGCGCGTGGT
GACTAGACTTGTTGCCCCCCCCGAAGACACGCGAGGAACTCGGGAATCGA
CGTTGAAGACTCTCGGCGCACAAGGCTCGTTCTTGCTTACAAGAGACACA
ACTGGTTCGACGATCTTGCTTTTCGGGCGGAGAGAAAAAATCATGGTCCA
CGATCCCACACAGCAGGTAGGCGGCGGGGGATTTCATGCGACTGGCAAGA
GGCCACGGAGAGCATCACCTAACTGGCCGTGTGCTGATCTTCTTCGTCTG
TAGAAGTTTGTGAGGCCAGAGATGTCGCTCGCCGTGTTTGCCGTTATTAC
ACCACGCTCTGTTTGTGCGGAGGGAGTCCAGTCAGGAAAAGAAAGCGATG
CGTAGCCGGGCAGCGAGGGTATTTCGTAACCCTAACCCTACTACTCAAAT
TTTGCTACTTTGCTTGGACTCCACAGCGGACAAGCGGCCCGACCGGTACG
CTCGTACGGGGAAAGGCGTAGTGCGGAGTCTGTTGCTGCTGCATAAGTGA
CCGCACATAACGTATCTTTTGTCACTATGCATTTTTTGTTTTGCGTGCCG
CTGACTGACGGAGACTCAATTTTACATTCCACGATAATCCTGCAAACCAA
GGTAAATTCCTCGAACCTTTCTTCGTCGCTGGATGTCTTGAAGTATACGT
ACGTGGCGGGTCATTGTTGCTTGGCTGCCCATCGTCCTATCGTCCAAAAT
AGAGGGTTACGATCTTACCCTTCCCCCACAAAATGTTAGGCGTAGTCATG
ACATATAGTTGGTGAAGTGATTTGGATATATATTAGTAACCTGCTAGGAT
ATGCATACTAGGCACAGTAGGATGCCACTGGAGCCTGGATCAACTTCAGG
GCCCAGGACTCCTGCTGCTATTTTTTTCCAGCGCGTGCAGCAAAAGCCAA
TGATGTAATTGAGGTTATAAGACTGCGTATGCACAAGACCTAAAATGAGC
CAAAGCTAGAAAAATCTACACTTAAAGGTAGTCTTTTTCGAATATTCAGA
CTATCGTAATCTCAAGCCCGAAAGTCCCCGCGGGGCGTAATCTCTTGTCT
GCTGTGATGCACGTCCTTTAAGACACGACACAGCGAGCGCTGATCGAACA
CGAATACAACAAATACTGTACAGCACGGGCACACAGGCGAATGCTGCCAC
ACCAATGGAATCTGTGCGATGGTGCAGACGCCCCGTCGAGCGCCCCAATA
ATTTGCTTAAAAAGAACATCCCGGGGCTAGCTCAAAAGGTTTCATCTGTC
CAGAGCGGGGCGATCTTTCTCAAACAAGCCAAGAAGCCCTGGTGCGGAAA
AATTCCCCTCGGAGGTGTTGTCTCTTTTCTGTGGTAATGATGCATCTTCT
CTACGACACAACATAGCGCTGACTCAACACCAAACCAACCACAATGAGTA
CGACAACTAGCACATGCGCACACACACGAGAATGCTTCCGCATTGGAGTA
TCGTCCGTGGGTTCGTGTGCGGAAGTCGTGCCGTGGGGCGGCCCAATAAT
TTGCCGGATAAAGAACACTCCGGGGCTAACTCAAAGGTAGTGGGGCGAAA
AATAAAAATAAAGAAGGGTGCCCCAGGGTGGTTGACCTCGGGGTGGCTGA
CTTGGAGTTTTGTGCGATGCTTGATTCTTGACCCTGTGATATTTATTTTC
CGGGGGTTCTCAAAGGAAATTTCGGTATACCTGGACGTGAACGAAAGTGC
GTAAATACTTTCGTGCGGCATGCATGCGGACGGAAGTCCACCACGCACCT
GCTTTTCATACTGGCTACACGGCTGTTTTTTTTTCTGCTGCGGTAGACAT
GATGTTAATCATACAGACAGATAAGTATCGGTGGGTGATATCGTCACGAC
CGACCCAACCGTGCATGACGGACCCACGCCGCCATTTCGGAGGGATCAGG
CGTCCGCAAGAGTCCTTTCCATTGTTCGGCGCATGCCCCATTTTTTCAAT
CGGACCCTTGGTGGTGACTTACACAAAACGCATCATCACCGCTTTGTCAT
GATCCTCTTGTCGCTCGCGCAGTTTCGTGAGGCATCGGTATTCGTCAACC
CACGAAGAAGGGGCGGGATAAACTACGCGGTAGGTTCAGCGGAGGCCAAG
TGGGCGGCGGAGGCCGCGACTCAGCCATGCCGGGAAGACACGCGCGCATG
CGCGAGTGTCGATCAAGAAGCAGGTGCGTTTGAGATGCGCCCACGAGGAA
CAAGCATCGGGGTGTACAGCAGTATGAACATGCATAGGTAGCATGAACAT
TTTATCATACATGGCAGTAGAAAACAACATGGCCATACCTTGAACGCTGT
TAAGGGAGGGGCAGGGAAAGGAGATTTTCGACCGCGCGGTGTCAGTCAAG
CCGGTTCCGAGCTAGCTCGGCGATTGCTCATGTTAACGGACTGATTTTTG
CAGCGCAAGATTCTCGAAGGAGGCGGCAGAATCTTTTGCGGGATAATTTA
GGTCGTTCAGAGGCGGTGCTAGGTAGACCTGAAAGGGGTGATAAATTTCC
TCATGAAAGTGAATTTGGTTTTTCCTTTTCACCGTATCAGTTCGACAACG
GCGTGCACTTCGTGGACGTGGGTTGCAGCTGCGAAGAAATCAACATCCGT
AAATCATGATTCGGCACTTGATCCAGTGCGCTGCCGAGGCTGAGCTCCGG
TGTCCCTGATGAACTCACCGTCCCCGCGTAGCCAAGGTTCGTTCAGTCTG
ATTTGGTCGCCCATCCGATCTTGTCCCCTTGCATTCTCTCGGTGGCTTGT
TTGTGCCAGAGGTCGGCGCGGAAATGCTGCGGATGATGAAAATGTGGTCC
TTCAGTGGCGGTGCCGGAGCACGCGCCGGCCAGGAGGCACCAGTGGGTAA
ACACTCATGATGTCGTCGAAACATGCTGGAGGCGGCCTAGCCTGGCTGGC
TCAATTTAGCCGGGCTTAGATACACCACGAACAATCTTTGGATGCGAGCA
GGTTTAGAGAAATTTAGCGGCGTGTCTGTATTCATGTGGTCGAAGCGACA
CATGCTCCTTCCAAACATGCTGCAATTGCCCCCCCCCATATGGTCTCCGA
CCCCGAGGCTAGAGTGAAGGCGCCGCGGTGTTTTTTTTGCTTGTCTGCAT
GCCTGTGATTTTTGTGTGTGTGTCTGTTTCCAAGTCCAGATTATCCTGTT
GCTTCACCTTTAATCTCTCCAGATGGAAGTACTGCAATTCGAAGTCGCGC
ATGCCATCGTTGCATTTGTACCGCTTGCAGTTTGCTTGTTTAGTTGAATT
TTGTATATTTCCGGTGTTGCCCTTTGACCACTTTGGGGTGTGTGTGCACG
AGTAGGTTTGACTCGCTGCCCTTTACTACGAGGGACAAGGATGGTGTGTG
CTAGTCGAGCGGTTGTGAACACCAGAGCTCAACAAGAGAGTGAGTTGAGC
GTGGGAGAGCTGTTGATAGGTGTAAATAGTGGCCGTGGTAGTGACTATGA
AGCTCTTGGTCAGGCGGCGAGTTTTTGGTGGGCAGGTTGGTGTATGTTGG
TGGGCGGTGGTGACGTGGATCGAAATATTACAGAGTTACAGAGTGGCGCC
GTGCGAGAGGGTATTATCGACAATGAGGTGCTTTACCTACGTGGTAGCCT
TGGTTCCGAACCTTGGCGTGCAGGCTCTTCCTGGCTTAATCGATTCTGTT
TTATACCTGTACTTCGTTTTTTTTTTGTGTGCGTGAGGACGTGGGGAAGA
AGGGGGTCGTTGGAGAGAGCGCTTTTCTCATGTCTCGCGGCAATCACATC
GGCTGGCGATAATACACGCTTGGACCTGCAACCAGTGCAAGTAAAGTGTG
GGATTGTCATATCTAAGCGTTCTCCATGGCTGGCCCTGAAGCTCCTGGCT
TCGGCCGGGTCCTCCGTTTCGTAATTTGTTCCAGAAGGGGCTAATTGTAC
GATGATGATGTGCGTCTGAGTCGTCCCTGGGCATCACCTGTCTGTCGCCG
GTGTAGGGGAAGTCATATCGTTTTAGTTATGTGCCTCGTTGGCTGCAAAT
AACATCTTTCTTCTGCGGCGAATATCTATGGATTCTCACGCCTTCCATCC
ACGAAGGAGGTGCGACCGTCTGTGGTGTTTTCGTTACGGGATGAGAGTAA
GTAGTAAACGGAAATCGCGTGGGTCTGTGTTTCACCGGGCACCCTGGTGA
CGACGCAGTTGGTCGCCCCGAAACCCTTCTAGCGGCCGGGTCGAGAGTGC
CAGTGTCGGGGAATGTTTGTTCGGGGATATATATATACTTCGGGGCACGG
GCAGAACTATACCTGCGTTGAAAGATAAGGGCACGCGGGGCAGAGTGTGG
TGTGTGACCGACCCCGTGCCGAACTTGTACAGCAGTCGGGAGAAGGAACA
ACGTATGGCACAATCGTTAGAAACTCCGAGTAGGGGTGGGCAACCGGGAT
GGTGAGACTGGGTGCATGTTCTAGTCGCCCTGAGAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig960:568..5503-

>mRNA_Ecto-sp13_S_contig960.21216.1 ID=mRNA_Ecto-sp13_S_contig960.21216.1|Name=mRNA_Ecto-sp13_S_contig960.21216.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=651bp|location=Sequence derived from alignment at Ecto-sp13_S_contig960:568..5503- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAATTATACGACTTTCTCCCGAAATTTCGATATGCCTTATTTAAT
GCTTTTTGACGTCCGAGCAGAACGGGGAAGGCCTACCTGCTGCCAGGGGA
GCTACACGACCGGCTCGATCATTCTCATCTCGTTCCTAGGAACGGCGGTT
GTGCGTTCTGAAGTTCAGCACGCTCGCTCTATCATAAGGGGGGGAGACTG
GGAAACCACACAAAGCAGAGGAGCGCGCGTGGTGACTAGACTTGTTGCCC
CCCCCGAAGACACGCGAGGAACTCGGGAATCGACGTTGAAGACTCTCGGC
GCACAAGGCTCGTTCTTGCTTACAAGAGACACAACTGGTTCGACGATCTT
GCTTTTCGGGCGGAGAGAAAAAATCATGGTCCACGATCCCACACAGCAGT
TTCGTGAGGCATCGGTATTCGTCAACCCACGAAGAAGGGGCGGGATAAAC
TACGCGGTAGGTTCAGCGGAGGCCAAGTGGGCGGCGGAGGCCGCGACTCA
GCCATGCCGGGAAGACACGCGCGCATGCGCGAGTGTCGATCAAGAAGCAG
AGGTCGGCGCGGAAATGCTGCGGATGATGAAAATGTGGTCCTTCAGTGGC
GGTGCCGGAGCACGCGCCGGCCAGGAGGCACCAGTGGGTAAACACTCATG
A
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