mRNA_Ecto-sp13_S_contig95840.21199.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig95840.21199.1
Unique NamemRNA_Ecto-sp13_S_contig95840.21199.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig95840.21199.1 vs. uniprot
Match: A0A6H5L0V2_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V2_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 2.330e-21
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 2
Query:  194 LIIWDEIVMSGKYSPEALDLTLKDLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 406
            LIIWDE+ M+ +Y  EALD TLKDL++NDR FGG  +L SGDWRQ  P++K G+P++ V+ A +SSH WKH
Sbjct:   28 LIIWDELPMTHRYCVEALDRTLKDLMRNDRLFGGKTILFSGDWRQTGPIVKHGSPTDTVDAAVISSHRWKH 98          
BLAST of mRNA_Ecto-sp13_S_contig95840.21199.1 vs. uniprot
Match: A0A6H5JNR7_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNR7_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 9.010e-18
Identity = 45/107 (42.06%), Postives = 66/107 (61.68%), Query Frame = 2
Query:   89 TLHSSYHLVMQQLKEVYATSRLNPR-ERMSSRTPLSLIIWDEIVMSGKYSPEALDLTLKDLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 406
            T HS + L +++     A   ++   +R        LI+WDEI MS ++S EAL+LTL+DL+ ND   GG  VL+SGD RQ+ PV+K G P+E ++ + +SS LW H
Sbjct:   46 TAHSMFKLPLEEKNVSGAMCNISAESQRAEVLRKCDLIVWDEIPMSHRFSVEALNLTLQDLMGNDNIMGGKTVLLSGDLRQIGPVVKHGGPAETIDASLISSPLWPH 152          
BLAST of mRNA_Ecto-sp13_S_contig95840.21199.1 vs. uniprot
Match: A0A6H5L0I5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0I5_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.450e-16
Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 2
Query:   89 TLHSSYHLVMQQLKEVYATSRLNPR-ERMSSRTPLSLIIWDEIVMSGKYSPEALDLTLK-DLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 406
            T HS + L +++     A   ++   +R        LI+WDEI MS ++S EAL+LTL+ DLL ND   GG  VL+SGD RQ+ PV+K G P+E ++ + +SS LW H
Sbjct:  524 TAHSMFKLPLEEKNVSGAMCNISAESQRAEVLRKCDLIVWDEIPMSHRFSVEALNLTLQADLLGNDNIMGGKTVLLSGDLRQIGPVVKHGGPAETIDASLISSPLWPH 631          
BLAST of mRNA_Ecto-sp13_S_contig95840.21199.1 vs. uniprot
Match: A0A6H5JZJ6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ6_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 6.190e-16
Identity = 43/107 (40.19%), Postives = 63/107 (58.88%), Query Frame = 2
Query:   89 TLHSSYHLVMQQLKEVYATSRLNPR-ERMSSRTPLSLIIWDEIVMSGKYSPEALDLTLKDLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 406
            T HS + L ++      A   ++   +R        LI+WDEI MS ++S EAL+LTL+DL+ ND   GG  VL+SGD RQ+ P +K G P+  ++ + +SS LW H
Sbjct:  361 TAHSMFKLPLEDKNVSGAMCNISAESQRAEVLRKCDLIVWDEIPMSHRFSVEALNLTLQDLMGNDNIMGGKTVLLSGDLRQIGPFIKHGGPAGTIDASLISSPLWPH 467          
BLAST of mRNA_Ecto-sp13_S_contig95840.21199.1 vs. uniprot
Match: UPI00053FF0F2 (uncharacterized protein LOC104901240 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FF0F2)

HSP 1 Score: 82.4 bits (202), Expect = 1.110e-15
Identity = 41/109 (37.61%), Postives = 71/109 (65.14%), Query Frame = 2
Query:   89 TLHSSYHLVMQQLKEVYATSRLNPRERMSSRTPL---SLIIWDEIVMSGKYSPEALDLTLKDLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 406
            T HS++ L +Q      + S  +  +R  + T L   ++IIWDE  M+ +Y  EA+D +L+DL++ND PFGG  ++  GD+RQV PV++ GT +++++ +F+ S +W+H
Sbjct:  249 TSHSTFQLPLQP----DSNSTCSFTKRSKTATILKHYTIIIWDEAPMTHRYQFEAVDRSLRDLMENDLPFGGKIIVFGGDFRQVLPVVRNGTRTQMIDASFVKSPIWRH 353          
BLAST of mRNA_Ecto-sp13_S_contig95840.21199.1 vs. uniprot
Match: A0A833W332_PHYIN (ATP-dependent DNA helicase n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833W332_PHYIN)

HSP 1 Score: 79.7 bits (195), Expect = 1.220e-15
Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = 2
Query:  191 SLIIWDEIVMSGKYSPEALDLTLKDLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 406
            SLI+WDE  M+ ++  EA+D TL+DLLKND+PFGG  +L+SG +RQ  PV+    P+E++  +   S LW+H
Sbjct:  140 SLIVWDEAPMTHRFQYEAVDRTLRDLLKNDKPFGGVTMLLSGVFRQTLPVIPRAGPAEVIAASLKKSTLWRH 211          
BLAST of mRNA_Ecto-sp13_S_contig95840.21199.1 vs. uniprot
Match: UPI0010A34E83 (uncharacterized protein LOC114724484 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A34E83)

HSP 1 Score: 82.0 bits (201), Expect = 1.640e-15
Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 2
Query:   89 TLHSSYHLVMQQLK-EVYATSRLNPRERMSSRTPLSLIIWDEIVMSGKYSPEALDLTLKDLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 406
            T HS + + +Q  +  V A  + +P   +       LIIWDE  M  +Y  EA+D + KD++ +++PFGG C+LM GD+RQ+ PV+  GT + +V  +  SSHLW+H
Sbjct: 1075 TAHSRFAIPIQVNEFSVCAIKQNSPLANLIQSA--KLIIWDEAPMIQRYCIEAVDRSFKDIMHSNKPFGGKCMLMGGDFRQILPVIPKGTRAVVVNASISSSHLWRH 1179          
BLAST of mRNA_Ecto-sp13_S_contig95840.21199.1 vs. uniprot
Match: UPI001C3FBCBC (ATP-dependent DNA helicase PIF7-like n=2 Tax=Callorhinchus milii TaxID=7868 RepID=UPI001C3FBCBC)

HSP 1 Score: 81.6 bits (200), Expect = 2.070e-15
Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 2
Query:  191 SLIIWDEIVMSGKYSPEALDLTLKDLLKN-DRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 406
            SLI+WDE  M+ +++ EA+D TL+D+L N   PFGG  V++SGD+RQ+ PV+K GTP++ V+  F SS LW H
Sbjct:  244 SLIVWDEAPMTHRFAFEAVDRTLRDILDNLHEPFGGKVVVLSGDFRQILPVVKKGTPADTVDACFKSSDLWSH 316          
BLAST of mRNA_Ecto-sp13_S_contig95840.21199.1 vs. uniprot
Match: UPI0007F026E6 (uncharacterized protein LOC108226331 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F026E6)

HSP 1 Score: 81.6 bits (200), Expect = 2.220e-15
Identity = 44/113 (38.94%), Postives = 68/113 (60.18%), Query Frame = 2
Query:   89 TLHSSYHLVMQQLKEVYATSRL-NPRERMSSRTPLSLIIWDEIVMSGKYSPEALDLTLKDLLKN------DRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 406
            T HS +H+ +    E     R  +P  ++  +T  SLIIWDE  M+ K+  EALD +L+D+L+       D+PFGG  ++  GD+RQ+ PV+  GT  EI++ + +SS+LW H
Sbjct:  964 TAHSRFHIPLDITAESTCEIRHGSPLAKLLLKT--SLIIWDEAPMTNKFCFEALDKSLRDILRTRFEHSTDKPFGGLTIVCGGDFRQILPVVPKGTKDEIIDASLISSYLWPH 1074          
BLAST of mRNA_Ecto-sp13_S_contig95840.21199.1 vs. uniprot
Match: H3G665_PHYRM (ATP-dependent DNA helicase n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G665_PHYRM)

HSP 1 Score: 77.4 bits (189), Expect = 2.360e-15
Identity = 41/106 (38.68%), Postives = 69/106 (65.09%), Query Frame = 2
Query:   89 TLHSSYHLVMQQLKEVYATSRLNPRERMSS-RTPLSLIIWDEIVMSGKYSPEALDLTLKDLLKND-RPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLW 400
            T HS++ + ++   E  +T  +N R +++      SLI+WDE  M+ +++ EA+D TL+D+L N+  PFGG  V++SGD+RQ+ PV+K G+ +E ++    SS LW
Sbjct:   12 TAHSTFKIPLKIDGE--STCNMNKRSQVTELMRKASLIVWDEAPMAHRHAFEAVDRTLRDVLDNEAEPFGGKVVVLSGDFRQILPVVKGGSATETIDACLKSSELW 115          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig95840.21199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0V2_9PHAE2.330e-2159.15ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JNR7_9PHAE9.010e-1842.06ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5L0I5_9PHAE2.450e-1642.59ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JZJ6_9PHAE6.190e-1640.19ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
UPI00053FF0F21.110e-1537.61uncharacterized protein LOC104901240 n=1 Tax=Beta ... [more]
A0A833W332_PHYIN1.220e-1548.61ATP-dependent DNA helicase n=1 Tax=Phytophthora in... [more]
UPI0010A34E831.640e-1539.25uncharacterized protein LOC114724484 n=1 Tax=Proso... [more]
UPI001C3FBCBC2.070e-1552.05ATP-dependent DNA helicase PIF7-like n=2 Tax=Callo... [more]
UPI0007F026E62.220e-1538.94uncharacterized protein LOC108226331 n=1 Tax=Daucu... [more]
H3G665_PHYRM2.360e-1538.68ATP-dependent DNA helicase n=2 Tax=Phytophthora ra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig95840contigEcto-sp13_S_contig95840:3..408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score83.2
Seed ortholog evalue7.4e-14
Seed eggNOG ortholog67593.Physo118995
Model size406
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Belongs to the helicase family
EggNOG OGs3QEKH@4776,COG0507@1,KOG0987@2759
Cds size291
COG Functional cat.D
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464223.6299696-CDS-Ecto-sp13_S_contig95840:2..2931681464223.6299696-CDS-Ecto-sp13_S_contig95840:2..293Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig95840 3..293 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464223.6421287-UTR-Ecto-sp13_S_contig95840:293..4081681464223.6421287-UTR-Ecto-sp13_S_contig95840:293..408Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig95840 294..408 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig95840.21199.1prot_Ecto-sp13_S_contig95840.21199.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig95840 3..293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig95840.21199.1

>prot_Ecto-sp13_S_contig95840.21199.1 ID=prot_Ecto-sp13_S_contig95840.21199.1|Name=mRNA_Ecto-sp13_S_contig95840.21199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
MQQLKEVYATSRLNPRERMSSRTPLSLIIWDEIVMSGKYSPEALDLTLKD
LLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH
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mRNA from alignment at Ecto-sp13_S_contig95840:3..408-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig95840.21199.1 ID=mRNA_Ecto-sp13_S_contig95840.21199.1|Name=mRNA_Ecto-sp13_S_contig95840.21199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=406bp|location=Sequence derived from alignment at Ecto-sp13_S_contig95840:3..408- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGAACTGGAGGCAGGACCGCCACTAGTTTTGTGCGCAGCATCCACCGG CATAGCTGCGCTGATATTGCCGGGAGGGCTGATAGCTCACTCTACATTCA AGTTACCATTTGGTGATGCAGCAGTTGAAGGAAGTGTATGCAACGTCAAG GCTGAATCCGAGAGAGCGCATGTCCTCCAGAACGCCTCTCTCACTCATTA TATGGGACGAGATTGTTATGAGCGGCAAATACAGCCCAGAAGCACTAGAT TTGACACTCAAAGACCTGTTGAAAAACGATAGACCTTTCGGGGGGACGTG TGTCCTCATGTCAGGAGATTGGCGTCAAGTTGCGCCCGTACTCAAATTCG GCACTCCATCAGAAATTGTAGAACACGCTTTTCTCTCGTCGCATTTATGG AAACAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig95840:3..408-

>mRNA_Ecto-sp13_S_contig95840.21199.1 ID=mRNA_Ecto-sp13_S_contig95840.21199.1|Name=mRNA_Ecto-sp13_S_contig95840.21199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig95840:3..408- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGCAGTTGAAGGAAGTGTATGCAACGTCAAGGCTGAATCCGAGAGA
GCGCATGTCCTCCAGAACGCCTCTCTCACTCATTATATGGGACGAGATTG
TTATGAGCGGCAAATACAGCCCAGAAGCACTAGATTTGACACTCAAAGAC
CTGTTGAAAAACGATAGACCTTTCGGGGGGACGTGTGTCCTCATGTCAGG
AGATTGGCGTCAAGTTGCGCCCGTACTCAAATTCGGCACTCCATCAGAAA
TTGTAGAACACGCTTTTCTCTCGTCGCATTTATGGAAACAC
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