mRNA_Ecto-sp13_S_contig95840.21199.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig95840.21199.1 vs. uniprot
Match: A0A6H5L0V2_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0V2_9PHAE) HSP 1 Score: 97.4 bits (241), Expect = 2.330e-21 Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 2
Query: 194 LIIWDEIVMSGKYSPEALDLTLKDLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 406
LIIWDE+ M+ +Y EALD TLKDL++NDR FGG +L SGDWRQ P++K G+P++ V+ A +SSH WKH
Sbjct: 28 LIIWDELPMTHRYCVEALDRTLKDLMRNDRLFGGKTILFSGDWRQTGPIVKHGSPTDTVDAAVISSHRWKH 98
BLAST of mRNA_Ecto-sp13_S_contig95840.21199.1 vs. uniprot
Match: A0A6H5JNR7_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNR7_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 9.010e-18 Identity = 45/107 (42.06%), Postives = 66/107 (61.68%), Query Frame = 2
Query: 89 TLHSSYHLVMQQLKEVYATSRLNPR-ERMSSRTPLSLIIWDEIVMSGKYSPEALDLTLKDLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 406
T HS + L +++ A ++ +R LI+WDEI MS ++S EAL+LTL+DL+ ND GG VL+SGD RQ+ PV+K G P+E ++ + +SS LW H
Sbjct: 46 TAHSMFKLPLEEKNVSGAMCNISAESQRAEVLRKCDLIVWDEIPMSHRFSVEALNLTLQDLMGNDNIMGGKTVLLSGDLRQIGPVVKHGGPAETIDASLISSPLWPH 152
BLAST of mRNA_Ecto-sp13_S_contig95840.21199.1 vs. uniprot
Match: A0A6H5L0I5_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0I5_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 2.450e-16 Identity = 46/108 (42.59%), Postives = 66/108 (61.11%), Query Frame = 2
Query: 89 TLHSSYHLVMQQLKEVYATSRLNPR-ERMSSRTPLSLIIWDEIVMSGKYSPEALDLTLK-DLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 406
T HS + L +++ A ++ +R LI+WDEI MS ++S EAL+LTL+ DLL ND GG VL+SGD RQ+ PV+K G P+E ++ + +SS LW H
Sbjct: 524 TAHSMFKLPLEEKNVSGAMCNISAESQRAEVLRKCDLIVWDEIPMSHRFSVEALNLTLQADLLGNDNIMGGKTVLLSGDLRQIGPVVKHGGPAETIDASLISSPLWPH 631
BLAST of mRNA_Ecto-sp13_S_contig95840.21199.1 vs. uniprot
Match: A0A6H5JZJ6_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZJ6_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 6.190e-16 Identity = 43/107 (40.19%), Postives = 63/107 (58.88%), Query Frame = 2
Query: 89 TLHSSYHLVMQQLKEVYATSRLNPR-ERMSSRTPLSLIIWDEIVMSGKYSPEALDLTLKDLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 406
T HS + L ++ A ++ +R LI+WDEI MS ++S EAL+LTL+DL+ ND GG VL+SGD RQ+ P +K G P+ ++ + +SS LW H
Sbjct: 361 TAHSMFKLPLEDKNVSGAMCNISAESQRAEVLRKCDLIVWDEIPMSHRFSVEALNLTLQDLMGNDNIMGGKTVLLSGDLRQIGPFIKHGGPAGTIDASLISSPLWPH 467
BLAST of mRNA_Ecto-sp13_S_contig95840.21199.1 vs. uniprot
Match: UPI00053FF0F2 (uncharacterized protein LOC104901240 n=1 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FF0F2) HSP 1 Score: 82.4 bits (202), Expect = 1.110e-15 Identity = 41/109 (37.61%), Postives = 71/109 (65.14%), Query Frame = 2
Query: 89 TLHSSYHLVMQQLKEVYATSRLNPRERMSSRTPL---SLIIWDEIVMSGKYSPEALDLTLKDLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 406
T HS++ L +Q + S + +R + T L ++IIWDE M+ +Y EA+D +L+DL++ND PFGG ++ GD+RQV PV++ GT +++++ +F+ S +W+H
Sbjct: 249 TSHSTFQLPLQP----DSNSTCSFTKRSKTATILKHYTIIIWDEAPMTHRYQFEAVDRSLRDLMENDLPFGGKIIVFGGDFRQVLPVVRNGTRTQMIDASFVKSPIWRH 353
BLAST of mRNA_Ecto-sp13_S_contig95840.21199.1 vs. uniprot
Match: A0A833W332_PHYIN (ATP-dependent DNA helicase n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833W332_PHYIN) HSP 1 Score: 79.7 bits (195), Expect = 1.220e-15 Identity = 35/72 (48.61%), Postives = 51/72 (70.83%), Query Frame = 2
Query: 191 SLIIWDEIVMSGKYSPEALDLTLKDLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 406
SLI+WDE M+ ++ EA+D TL+DLLKND+PFGG +L+SG +RQ PV+ P+E++ + S LW+H
Sbjct: 140 SLIVWDEAPMTHRFQYEAVDRTLRDLLKNDKPFGGVTMLLSGVFRQTLPVIPRAGPAEVIAASLKKSTLWRH 211
BLAST of mRNA_Ecto-sp13_S_contig95840.21199.1 vs. uniprot
Match: UPI0010A34E83 (uncharacterized protein LOC114724484 n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A34E83) HSP 1 Score: 82.0 bits (201), Expect = 1.640e-15 Identity = 42/107 (39.25%), Postives = 65/107 (60.75%), Query Frame = 2
Query: 89 TLHSSYHLVMQQLK-EVYATSRLNPRERMSSRTPLSLIIWDEIVMSGKYSPEALDLTLKDLLKNDRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 406
T HS + + +Q + V A + +P + LIIWDE M +Y EA+D + KD++ +++PFGG C+LM GD+RQ+ PV+ GT + +V + SSHLW+H
Sbjct: 1075 TAHSRFAIPIQVNEFSVCAIKQNSPLANLIQSA--KLIIWDEAPMIQRYCIEAVDRSFKDIMHSNKPFGGKCMLMGGDFRQILPVIPKGTRAVVVNASISSSHLWRH 1179
BLAST of mRNA_Ecto-sp13_S_contig95840.21199.1 vs. uniprot
Match: UPI001C3FBCBC (ATP-dependent DNA helicase PIF7-like n=2 Tax=Callorhinchus milii TaxID=7868 RepID=UPI001C3FBCBC) HSP 1 Score: 81.6 bits (200), Expect = 2.070e-15 Identity = 38/73 (52.05%), Postives = 54/73 (73.97%), Query Frame = 2
Query: 191 SLIIWDEIVMSGKYSPEALDLTLKDLLKN-DRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 406
SLI+WDE M+ +++ EA+D TL+D+L N PFGG V++SGD+RQ+ PV+K GTP++ V+ F SS LW H
Sbjct: 244 SLIVWDEAPMTHRFAFEAVDRTLRDILDNLHEPFGGKVVVLSGDFRQILPVVKKGTPADTVDACFKSSDLWSH 316
BLAST of mRNA_Ecto-sp13_S_contig95840.21199.1 vs. uniprot
Match: UPI0007F026E6 (uncharacterized protein LOC108226331 n=1 Tax=Daucus carota subsp. sativus TaxID=79200 RepID=UPI0007F026E6) HSP 1 Score: 81.6 bits (200), Expect = 2.220e-15 Identity = 44/113 (38.94%), Postives = 68/113 (60.18%), Query Frame = 2
Query: 89 TLHSSYHLVMQQLKEVYATSRL-NPRERMSSRTPLSLIIWDEIVMSGKYSPEALDLTLKDLLKN------DRPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLWKH 406
T HS +H+ + E R +P ++ +T SLIIWDE M+ K+ EALD +L+D+L+ D+PFGG ++ GD+RQ+ PV+ GT EI++ + +SS+LW H
Sbjct: 964 TAHSRFHIPLDITAESTCEIRHGSPLAKLLLKT--SLIIWDEAPMTNKFCFEALDKSLRDILRTRFEHSTDKPFGGLTIVCGGDFRQILPVVPKGTKDEIIDASLISSYLWPH 1074
BLAST of mRNA_Ecto-sp13_S_contig95840.21199.1 vs. uniprot
Match: H3G665_PHYRM (ATP-dependent DNA helicase n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G665_PHYRM) HSP 1 Score: 77.4 bits (189), Expect = 2.360e-15 Identity = 41/106 (38.68%), Postives = 69/106 (65.09%), Query Frame = 2
Query: 89 TLHSSYHLVMQQLKEVYATSRLNPRERMSS-RTPLSLIIWDEIVMSGKYSPEALDLTLKDLLKND-RPFGGTCVLMSGDWRQVAPVLKFGTPSEIVEHAFLSSHLW 400
T HS++ + ++ E +T +N R +++ SLI+WDE M+ +++ EA+D TL+D+L N+ PFGG V++SGD+RQ+ PV+K G+ +E ++ SS LW
Sbjct: 12 TAHSTFKIPLKIDGE--STCNMNKRSQVTELMRKASLIVWDEAPMAHRHAFEAVDRTLRDVLDNEAEPFGGKVVVLSGDFRQILPVVKGGSATETIDACLKSSELW 115 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig95840.21199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig95840.21199.1 >prot_Ecto-sp13_S_contig95840.21199.1 ID=prot_Ecto-sp13_S_contig95840.21199.1|Name=mRNA_Ecto-sp13_S_contig95840.21199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp MQQLKEVYATSRLNPRERMSSRTPLSLIIWDEIVMSGKYSPEALDLTLKDback to top mRNA from alignment at Ecto-sp13_S_contig95840:3..408- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig95840.21199.1 ID=mRNA_Ecto-sp13_S_contig95840.21199.1|Name=mRNA_Ecto-sp13_S_contig95840.21199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=406bp|location=Sequence derived from alignment at Ecto-sp13_S_contig95840:3..408- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig95840:3..408- >mRNA_Ecto-sp13_S_contig95840.21199.1 ID=mRNA_Ecto-sp13_S_contig95840.21199.1|Name=mRNA_Ecto-sp13_S_contig95840.21199.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig95840:3..408- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |