mRNA_Ecto-sp13_S_contig9580.21194.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9580.21194.1
Unique NamemRNA_Ecto-sp13_S_contig9580.21194.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9580.21194.1 vs. uniprot
Match: A0A6H5JH87_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH87_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 2.740e-6
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 1 
Query:  148 SPWVEIIGIALGISTGWYFRRRDVITKRE 234
            S   EIIGIALGISTGWYFRRRDVIT+RE
Sbjct:   12 STNTEIIGIALGISTGWYFRRRDVITERE 40
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9580.21194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JH87_9PHAE2.740e-686.21Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9580contigEcto-sp13_S_contig9580:983..2004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size236
Hectar predicted targeting categorysignal peptide
Exons2
Cds size234
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464223.30637-CDS-Ecto-sp13_S_contig9580:982..10621681464223.30637-CDS-Ecto-sp13_S_contig9580:982..1062Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9580 983..1062 +
1681464223.3168774-CDS-Ecto-sp13_S_contig9580:1848..20021681464223.3168774-CDS-Ecto-sp13_S_contig9580:1848..2002Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9580 1849..2002 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9580.21194.1prot_Ecto-sp13_S_contig9580.21194.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9580 983..2002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9580.21194.1

>prot_Ecto-sp13_S_contig9580.21194.1 ID=prot_Ecto-sp13_S_contig9580.21194.1|Name=mRNA_Ecto-sp13_S_contig9580.21194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=78bp
FSRLRHKQAGRMLLLGRLLGRPVAAAIIEVDGGVDVYVLLRRCLVVAFSS
PWVEIIGIALGISTGWYFRRRDVITKRE
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mRNA from alignment at Ecto-sp13_S_contig9580:983..2004+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9580.21194.1 ID=mRNA_Ecto-sp13_S_contig9580.21194.1|Name=mRNA_Ecto-sp13_S_contig9580.21194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1022bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9580:983..2004+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTCGCGCTTGAGACACAAGCAGGCGGGCAGGATGCTTCTCTTGGGGCG
GCTCCTGGGCCGACCTGTAGCTGCAGCGATGTGAGTGCGATAACCTTTTG
TGACGTCAACGAAACGCTACCGGTTTGTGCCGGTTTCTGTATGCCCCAGG
AACGGCGTTGCGTATGATGCCAGCCTGGTCGAGCATTAGATGGTGTTAAC
TGGTTTTCACGAGGATTGTGCGCGTATCTTCGATGTACCCCTACAGCAGT
ACATGGTAGATTATCAGCTTACGCCCGCTGACGCCCGCTGCCGCGGGCGC
GCCGACTAACCCCAAGGATGCACGCCGGTATTGGCATTTCAACGACACGT
TGAAGGATGAAGTCGTGATCAGGTGGCGCGGGGGAGCTTGCATGCCCTAC
TCCTGCTGCTGAGGTGTTGGCCAAGGGTGTGGGACGAAGTATAGTCAGCA
GCAGCAGACGTATCATAGAGCCTGAGGACCGCCCAACATCCGTTTGTCAA
CCCCCCGCCCTCCACCTTTCGAAAGATAGCGGCGCCCAATAGAAATTCAG
CGTATCTGCCAAAGCGCGCCCCACTTAGCAATGGGACAATCAATCCATCA
GGCGATCAGCCGATAATCCTGGTGTCCGAAGTAGAACGAGGTATCCTCGG
ATGGATCGTTTTCCCGTACAGACCACGCTTCGAGCTTAGCATGATCTCAT
TCCCACGGAAATCCTAAACTCAAGTCGAGAACCTTGATCCCGCGCGTGAC
TCGCGCCATGCCTCCCCCCCACCCACCCACCCCCGCTGCCCGGCCCTTCG
TTGGCCTCTCCACGAACATAAATTGGCGTGAAACCTACCGGTACATACAA
TCAAAACAATCGTCAGCATCGAAGTCGATGGCGGCGTCGACGTGTATGTC
CTACTCCGGCGGTGTCTCGTCGTGGCCTTTTCCTCGCCGTGGGTGGAGAT
CATCGGCATCGCACTCGGGATAAGCACGGGCTGGTACTTCCGACGGCGTG
ATGTCATCACCAAGAGGGAGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9580:983..2004+

>mRNA_Ecto-sp13_S_contig9580.21194.1 ID=mRNA_Ecto-sp13_S_contig9580.21194.1|Name=mRNA_Ecto-sp13_S_contig9580.21194.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=234bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9580:983..2004+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTCTCGCGCTTGAGACACAAGCAGGCGGGCAGGATGCTTCTCTTGGGGCG
GCTCCTGGGCCGACCTGTAGCTGCAGCGATCATCGAAGTCGATGGCGGCG
TCGACGTGTATGTCCTACTCCGGCGGTGTCTCGTCGTGGCCTTTTCCTCG
CCGTGGGTGGAGATCATCGGCATCGCACTCGGGATAAGCACGGGCTGGTA
CTTCCGACGGCGTGATGTCATCACCAAGAGGGAG
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