mRNA_Ecto-sp13_S_contig958.21192.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig958.21192.1
Unique NamemRNA_Ecto-sp13_S_contig958.21192.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig958.21192.1 vs. uniprot
Match: D7G092_ECTSI (Smr domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G092_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 4.410e-49
Identity = 75/76 (98.68%), Postives = 76/76 (100.00%), Query Frame = 1
Query:    1 MGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFAELSEHSTGGWG 228
            MGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFA+LSEHSTGGWG
Sbjct:   52 MGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFAKLSEHSTGGWG 127          
BLAST of mRNA_Ecto-sp13_S_contig958.21192.1 vs. uniprot
Match: A0A6H5JKG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKG2_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 5.570e-44
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 1
Query:    1 MGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFAELSEHSTGGWG 228
            MGALA RGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFAELSEHSTGGWG
Sbjct:  579 MGALAARGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDVQFAELSEHSTGGWG 654          
BLAST of mRNA_Ecto-sp13_S_contig958.21192.1 vs. uniprot
Match: A0A024GR71_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GR71_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.790e-12
Identity = 34/59 (57.63%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
            LAE GL  +R++TG GHHSKGP N ARLLPAVE F    GY ++ V D+  GHVG + V
Sbjct:  943 LAEDGLELIRIVTGAGHHSKGPQNTARLLPAVEQFLRSEGYEYKSVVDRK-GHVGMLQV 1000          
BLAST of mRNA_Ecto-sp13_S_contig958.21192.1 vs. uniprot
Match: F0WYU9_9STRA (Uncharacterized protein AlNc14C400G11359 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WYU9_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 6.960e-12
Identity = 34/59 (57.63%), Postives = 42/59 (71.19%), Query Frame = 1
Query:   10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
            LAE GL +VR++TGTGHHS+GP N ARLLPAVE+F    GY    V D+  G+VG + V
Sbjct:  481 LAEDGLDTVRIVTGTGHHSRGPQNTARLLPAVEHFLRTEGYESESVADRK-GYVGMLQV 538          
BLAST of mRNA_Ecto-sp13_S_contig958.21192.1 vs. uniprot
Match: A0A8K1CIW3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CIW3_PYTOL)

HSP 1 Score: 65.9 bits (159), Expect = 8.440e-11
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1
Query:   10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
            LA+ GL S+ ++TG+GHHSKGPT  ARLLPAVE F    GY F  V D+  G+VG + V
Sbjct:  466 LADDGLESIYLVTGSGHHSKGPTGNARLLPAVEQFLTAEGYRFSPVADRR-GYVGMLMV 523          
BLAST of mRNA_Ecto-sp13_S_contig958.21192.1 vs. uniprot
Match: K3WV24_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WV24_GLOUD)

HSP 1 Score: 65.5 bits (158), Expect = 1.160e-10
Identity = 31/59 (52.54%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
            LA+ GL ++ ++TG+GHHSKGP   ARLLPA+E F    GY F  VPD   G+VG + V
Sbjct:  554 LADEGLETIYLVTGSGHHSKGPQGNARLLPAIEQFLAAEGYQFSSVPD-GRGYVGMLLV 611          
BLAST of mRNA_Ecto-sp13_S_contig958.21192.1 vs. uniprot
Match: A0A3M6VB56_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VB56_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.600e-9
Identity = 31/59 (52.54%), Postives = 37/59 (62.71%), Query Frame = 1
Query:   10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
            LA+ G+  + V+TG+GHHSKGP   ARLLPAVE F    GY F  V D   G VG + V
Sbjct:  535 LADEGVDEIYVVTGSGHHSKGPHGNARLLPAVERFLAAEGYQFTPVAD-GAGFVGMLLV 592          
BLAST of mRNA_Ecto-sp13_S_contig958.21192.1 vs. uniprot
Match: A0A0W8DKZ9_PHYNI (Membrane metallo-endopeptidase 1 n=1 Tax=Phytophthora nicotianae TaxID=4790 RepID=A0A0W8DKZ9_PHYNI)

HSP 1 Score: 60.8 bits (146), Expect = 4.450e-9
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
            LA+ G+ S+ ++TG+GHHSKGP   ARLLPAVE F    GY +  V D++ G VG + V
Sbjct:  281 LADEGVDSIYLVTGSGHHSKGPDGNARLLPAVERFLAGEGYQYTPVADEA-GFVGMLLV 338          
BLAST of mRNA_Ecto-sp13_S_contig958.21192.1 vs. uniprot
Match: A0A0W8C524_PHYNI (NEDD4-binding protein 2 n=7 Tax=Phytophthora TaxID=4783 RepID=A0A0W8C524_PHYNI)

HSP 1 Score: 60.8 bits (146), Expect = 4.910e-9
Identity = 30/59 (50.85%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
            LA+ G+ S+ ++TG+GHHSKGP   ARLLPAVE F    GY +  V D++ G VG + V
Sbjct:  511 LADEGVDSIYLVTGSGHHSKGPDGNARLLPAVERFLAGEGYQYTPVADEA-GFVGMLLV 568          
BLAST of mRNA_Ecto-sp13_S_contig958.21192.1 vs. uniprot
Match: D0MT46_PHYIT (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=D0MT46_PHYIT)

HSP 1 Score: 60.5 bits (145), Expect = 6.730e-9
Identity = 31/59 (52.54%), Postives = 39/59 (66.10%), Query Frame = 1
Query:   10 LAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVPDQSTGHVGAIDV 186
            LA+ G+ S+ ++TG+GHHSKGP   ARLLPAVE F    GY +  V D S G VG + V
Sbjct:  535 LADEGVDSIYLVTGSGHHSKGPDGNARLLPAVERFLAGEGYQYTPVADGS-GFVGMLLV 592          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig958.21192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 22
Match NameE-valueIdentityDescription
D7G092_ECTSI4.410e-4998.68Smr domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JKG2_9PHAE5.570e-4498.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A024GR71_9STRA2.790e-1257.63Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
F0WYU9_9STRA6.960e-1257.63Uncharacterized protein AlNc14C400G11359 n=1 Tax=A... [more]
A0A8K1CIW3_PYTOL8.440e-1155.93Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WV24_GLOUD1.160e-1052.54Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3M6VB56_9STRA3.600e-952.54Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A0W8DKZ9_PHYNI4.450e-950.85Membrane metallo-endopeptidase 1 n=1 Tax=Phytophth... [more]
A0A0W8C524_PHYNI4.910e-950.85NEDD4-binding protein 2 n=7 Tax=Phytophthora TaxID... [more]
D0MT46_PHYIT6.730e-952.54Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig958contigEcto-sp13_S_contig958:3380..4171 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score67.4
Seed ortholog evalue3.3e-09
Seed eggNOG ortholog653948.CCA26658
Model size231
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.2',3'-cyclic-nucleotide 3'-phosphodiesterase activity
EggNOG OGsKOG2401@1,KOG2401@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-24_000370.1
Cds size231
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464223.1321952-CDS-Ecto-sp13_S_contig958:3379..34631681464223.1321952-CDS-Ecto-sp13_S_contig958:3379..3463Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig958 3380..3463 +
1681464223.1433425-CDS-Ecto-sp13_S_contig958:4024..41711681464223.1433425-CDS-Ecto-sp13_S_contig958:4024..4171Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig958 4025..4171 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig958.21192.1prot_Ecto-sp13_S_contig958.21192.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig958 3380..4171 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig958.21192.1

>prot_Ecto-sp13_S_contig958.21192.1 ID=prot_Ecto-sp13_S_contig958.21192.1|Name=mRNA_Ecto-sp13_S_contig958.21192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
MGALAERGLCSVRVLTGTGHHSKGPTNKARLLPAVENFCLIRGYLFRKVP
DQSTGHVGAIDVQFAELSEHSTGGWG*
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mRNA from alignment at Ecto-sp13_S_contig958:3380..4171+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig958.21192.1 ID=mRNA_Ecto-sp13_S_contig958.21192.1|Name=mRNA_Ecto-sp13_S_contig958.21192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=792bp|location=Sequence derived from alignment at Ecto-sp13_S_contig958:3380..4171+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGCGTTGGCGGAGAGGGGTTTGTGCAGCGTGAGAGTCCTGACCGG CACGGGACATCACAGCAAGGGACCCACCAACAAGGTAAAACACCAGGCTT GTGTCACCCTTGAGATGGATCTCTCCGGTCGCAGTCGGAAGTCGAATCAT GCGCTTCTTGCAGCACGTGTTTCTGCCGGTGGTCGCGTGTGTCTGCTTTC GCTTGGTTGCTGTTGTTGTTGTTGTTGTTGTTGTTGTCTTCACATTAACA ACCCGTTCCGGTCTCCACTCGTACCTTCTAAGGTTCGTACTTTGTTTGCT TTCTATATTTCGAGGACAAATCTGCACGTGCGTCTCGGACGGCGAAAGCG TTTTGATTTCCTGTGGGGTATCCCAGCACCAACTACATTGGTTGTAGTCC AGGATTGTCGACACTGCCTGCACCCATCCGGAATTTGTGTTCGTACGGTT CGAGTTTTATTCAGCTCACTTTCTGCATTGCCGATTTCTCAAGTGATGAT GCTGTACTCCGGTATATGGTCCATCCGGAATACCTCACGAGTGCTTCGCC ATCGAAGAGCTTTTGCTGATGAGTGCGGGTATGATCACGCCCCCCTCCAC CCGGCCGTGCGTGCATGCACTGCCGCACTTGAAACACGTCAACAGGCGCG TCTTTTGCCAGCGGTGGAAAACTTTTGCTTGATTCGCGGTTATCTCTTCA GAAAGGTACCGGATCAAAGCACCGGCCACGTCGGGGCGATCGACGTCCAA TTCGCGGAACTGTCGGAACACTCGACAGGAGGATGGGGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig958:3380..4171+

>mRNA_Ecto-sp13_S_contig958.21192.1 ID=mRNA_Ecto-sp13_S_contig958.21192.1|Name=mRNA_Ecto-sp13_S_contig958.21192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig958:3380..4171+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGAGCGTTGGCGGAGAGGGGTTTGTGCAGCGTGAGAGTCCTGACCGG
CACGGGACATCACAGCAAGGGACCCACCAACAAGGCGCGTCTTTTGCCAG
CGGTGGAAAACTTTTGCTTGATTCGCGGTTATCTCTTCAGAAAGGTACCG
GATCAAAGCACCGGCCACGTCGGGGCGATCGACGTCCAATTCGCGGAACT
GTCGGAACACTCGACAGGAGGATGGGGTTAA
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