mRNA_Ecto-sp13_S_contig95637.21173.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig95637.21173.1
Unique NamemRNA_Ecto-sp13_S_contig95637.21173.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig95637.21173.1 vs. uniprot
Match: A0A6H5L4A3_9PHAE (TYR_PHOSPHATASE_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4A3_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 2.020e-33
Identity = 102/112 (91.07%), Postives = 103/112 (91.96%), Query Frame = 1 
Query:    1 SRGTRMSRARRKSAPGKPPADVLAXXXXXXXXXXXXXXXXXXXXXXXXXXS---LLLLSPAKGINCRQTPSNAACSTPGDDSAAAASPGSCTGVERCVTRSSGGGGTSCRAR 327
            SRG RMSRARRKSAPGKPPADVLA  XXXXXXXXXXXXXXXXXXXXXXXX    LLLLSPAKGINCRQT SNAACSTPGDD+AAA SPGSCTGVERCVTRSSGGGGTSCRAR
Sbjct:  468 SRGMRMSRARRKSAPGKPPADVLAARXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLLLSPAKGINCRQTSSNAACSTPGDDAAAAPSPGSCTGVERCVTRSSGGGGTSCRAR 579
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig95637.21173.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L4A3_9PHAE2.020e-3391.07TYR_PHOSPHATASE_2 domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig95637contigEcto-sp13_S_contig95637:40..434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size395
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464221.2880557-UTR-Ecto-sp13_S_contig95637:39..541681464221.2880557-UTR-Ecto-sp13_S_contig95637:39..54Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig95637 40..54 +
1681464221.312541-UTR-Ecto-sp13_S_contig95637:369..4341681464221.312541-UTR-Ecto-sp13_S_contig95637:369..434Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig95637 370..434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464221.3014774-CDS-Ecto-sp13_S_contig95637:54..3691681464221.3014774-CDS-Ecto-sp13_S_contig95637:54..369Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig95637 55..369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig95637.21173.1prot_Ecto-sp13_S_contig95637.21173.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig95637 55..369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig95637.21173.1

>prot_Ecto-sp13_S_contig95637.21173.1 ID=prot_Ecto-sp13_S_contig95637.21173.1|Name=mRNA_Ecto-sp13_S_contig95637.21173.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MSRARRKSAPGKPPADVLAACAAAAAAADAASSSGKEDNDDGSTKSLLLL
SPAKGINCRQTPSNAACSTPGDDSAAAASPGSCTGVERCVTRSSGGGGTS
CRAR*
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mRNA from alignment at Ecto-sp13_S_contig95637:40..434+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig95637.21173.1 ID=mRNA_Ecto-sp13_S_contig95637.21173.1|Name=mRNA_Ecto-sp13_S_contig95637.21173.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=395bp|location=Sequence derived from alignment at Ecto-sp13_S_contig95637:40..434+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGAGAGGGACGAGGATGAGCCGCGCGCGGCGGAAGTCGGCGCCGGGCAA
GCCGCCGGCCGACGTGCTTGCGGCATGCGCGGCTGCTGCTGCTGCTGCTG
ATGCCGCGTCGTCGTCGGGCAAAGAGGACAACGATGACGGCTCGACGAAG
TCGCTCCTGTTGCTGAGCCCCGCGAAGGGGATCAACTGCCGCCAGACGCC
GTCGAACGCCGCGTGCTCGACGCCAGGGGATGATTCCGCGGCCGCCGCGT
CCCCGGGTTCGTGCACGGGCGTGGAGCGGTGCGTGACGAGGTCTAGCGGC
GGCGGGGGAACCTCCTGCCGCGCGAGGTGATAGGGTCATGCCGTGCTTGT
CGCTTCCGTCGGTGGATCCAGTTTTCCGTTCTTGGGATGCGAGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig95637:40..434+

>mRNA_Ecto-sp13_S_contig95637.21173.1 ID=mRNA_Ecto-sp13_S_contig95637.21173.1|Name=mRNA_Ecto-sp13_S_contig95637.21173.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig95637:40..434+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGCCGCGCGCGGCGGAAGTCGGCGCCGGGCAAGCCGCCGGCCGACGT
GCTTGCGGCATGCGCGGCTGCTGCTGCTGCTGCTGATGCCGCGTCGTCGT
CGGGCAAAGAGGACAACGATGACGGCTCGACGAAGTCGCTCCTGTTGCTG
AGCCCCGCGAAGGGGATCAACTGCCGCCAGACGCCGTCGAACGCCGCGTG
CTCGACGCCAGGGGATGATTCCGCGGCCGCCGCGTCCCCGGGTTCGTGCA
CGGGCGTGGAGCGGTGCGTGACGAGGTCTAGCGGCGGCGGGGGAACCTCC
TGCCGCGCGAGGTGA
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