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Homology
BLAST of mRNA_Ecto-sp13_S_contig9559.21167.1 vs. uniprot
Match: D7FR34_ECTSI (4HBT domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FR34_ECTSI) HSP 1 Score: 334 bits (856), Expect = 9.150e-113 Identity = 172/184 (93.48%), Postives = 175/184 (95.11%), Query Frame = 1
Query: 253 AAAASMSSEKRELRRVALAHLTKSIGTGAVTDNLNNQSQDSTVGVYEEGGGVGGTVALAAALLRPGEREDEEASQSDGGEEDTVPLPPNVHDVDKILVKTPLLRTDNAFHDTLNNDNGISCPFVLNRPDQDGEGIEAVVRFGKSIAGHPKIVHGGVTALTFDNLFGMALFLQNTGAVFTAYIKV 804
AAAASMSSEKRELRRVALAHLTKS+ GAV DNL NQSQDSTVG YEEGGGVGGTVALAAALLRPGE EDEEA+QS GGE DTVPLPPNVHDVDKILVKTPLLR DNAFHDTLNND+GISCPFVLNRPDQDGEGIEAVVRFGKSIAGHPKIVHGGVTALTFDNLFGMALFLQNTGAVFTAYIKV
Sbjct: 3 AAAASMSSEKRELRRVALAHLTKSVRAGAVNDNLKNQSQDSTVGAYEEGGGVGGTVALAAALLRPGESEDEEANQSVGGEGDTVPLPPNVHDVDKILVKTPLLRNDNAFHDTLNNDSGISCPFVLNRPDQDGEGIEAVVRFGKSIAGHPKIVHGGVTALTFDNLFGMALFLQNTGAVFTAYIKV 186
BLAST of mRNA_Ecto-sp13_S_contig9559.21167.1 vs. uniprot
Match: A0A835YMX9_9STRA (HotDog domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMX9_9STRA) HSP 1 Score: 102 bits (253), Expect = 2.910e-22 Identity = 47/93 (50.54%), Postives = 63/93 (67.74%), Query Frame = 1
Query: 526 DVDKILVKTPLLRTDNAFHDTLNNDNGISCPFVLNRPDQDGEGIEAVVRFGKSIAGHPKIVHGGVTALTFDNLFGMALFLQNTGAVFTAYIKV 804
DVD++L P + D+ FHDTLN+ G+ CP+V D+D ++AVVRFG+ GHP +VHGG+T+LTFDNL G FL+ AV TAY+ V
Sbjct: 97 DVDRLLATNPAYKRDHVFHDTLNHYQGVQCPYVTY--DRDSNSLKAVVRFGEQTRGHPNLVHGGITSLTFDNLLGWLQFLEGRMAVLTAYLHV 187
BLAST of mRNA_Ecto-sp13_S_contig9559.21167.1 vs. uniprot
Match: A0A836CB13_9STRA (HotDog domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB13_9STRA) HSP 1 Score: 89.7 bits (221), Expect = 1.130e-18 Identity = 45/95 (47.37%), Postives = 60/95 (63.16%), Query Frame = 1
Query: 520 VHDVDKILVKTPLLRTDNAFHDTLNNDNGISCPFVLNRPDQDGEGIEAVVRFGKSIAGHPKIVHGGVTALTFDNLFGMALFLQNTGAVFTAYIKV 804
+HDV +L + P D+ HDTLN +G+ CP V + D G ++AVVRFG+ GHP +VHGG+TALTFDNL G +F+ V TAY+ V
Sbjct: 1 LHDVTDLLRRYPEYWRDHVLHDTLNYRHGVQCPVVSH--DSAGCRLQAVVRFGQQTRGHPDLVHGGITALTFDNLQGWCMFMDGRTNVLTAYLHV 93
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 339.0 |
| Seed ortholog evalue | 2.1e-90 |
| Seed eggNOG ortholog | 2880.D7FR34 |
| Preferred name | THEM4 |
| Model size | 810 |
| KEGG ko | ko:K16339 |
| KEGG Pathway | ko04151,map04151 |
| Hectar predicted targeting category | mitochondrion |
| GOs | GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005886,GO:0006082,GO:0006139,GO:0006163,GO:0006629,GO:0006631,GO:0006637,GO:0006644,GO:0006650,GO:0006725,GO:0006732,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006839,GO:0006915,GO:0006996,GO:0007005,GO:0007006,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009117,GO:0009150,GO:0009259,GO:0009966,GO:0009968,GO:0009987,GO:0010646,GO:0010648,GO:0012501,GO:0016020,GO:0016043,GO:0016289,GO:0016290,GO:0016787,GO:0016788,GO:0016790,GO:0019637,GO:0019693,GO:0019752,GO:0023051,GO:0023052,GO:0023057,GO:0031974,GO:0032048,GO:0032787,GO:0033865,GO:0033875,GO:0034032,GO:0034641,GO:0035336,GO:0035337,GO:0035383,GO:0035556,GO:0035965,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043436,GO:0043491,GO:0043603,GO:0044237,GO:0044238,GO:0044255,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046471,GO:0046483,GO:0046486,GO:0046902,GO:0047617,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051186,GO:0051234,GO:0051716,GO:0051896,GO:0051898,GO:0055086,GO:0061024,GO:0065007,GO:0065008,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0090559,GO:1901135,GO:1901360,GO:1901564,GO:1901568,GO:1902108,GO:1902531,GO:1902532 |
| Exons | 5 |
| EggNOG free text desc. | thioesterase |
| EggNOG OGs | KOG4781@1,KOG4781@2759 |
| Ec32 ortholog description | Thioesterase superfamily |
| Ec32 ortholog | Ec-09_003660.1 |
| Cds size | 810 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681464220.6524193-CDS-Ecto-sp13_S_contig9559:96..204 | 1681464220.6524193-CDS-Ecto-sp13_S_contig9559:96..204 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9559 97..204 - |
| 1681464220.6657734-CDS-Ecto-sp13_S_contig9559:447..554 | 1681464220.6657734-CDS-Ecto-sp13_S_contig9559:447..554 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9559 448..554 - |
| 1681464220.6751518-CDS-Ecto-sp13_S_contig9559:1196..1452 | 1681464220.6751518-CDS-Ecto-sp13_S_contig9559:1196..1452 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9559 1197..1452 - |
| 1681464220.6877286-CDS-Ecto-sp13_S_contig9559:4135..4227 | 1681464220.6877286-CDS-Ecto-sp13_S_contig9559:4135..4227 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9559 4136..4227 - |
| 1681464220.699797-CDS-Ecto-sp13_S_contig9559:5150..5397 | 1681464220.699797-CDS-Ecto-sp13_S_contig9559:5150..5397 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig9559 5151..5397 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9559.21167.1 >prot_Ecto-sp13_S_contig9559.21167.1 ID=prot_Ecto-sp13_S_contig9559.21167.1|Name=mRNA_Ecto-sp13_S_contig9559.21167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=270bp
MAFRCLLARGRHLSTSFLTWRYSTRQRTTSSAASAAAAAVAVPGSRTSVS AIPGGLLLLTTMVVSWERESGEVQCDSVTDEEVMAAAASMSSEKRELRRV ALAHLTKSIGTGAVTDNLNNQSQDSTVGVYEEGGGVGGTVALAAALLRPG EREDEEASQSDGGEEDTVPLPPNVHDVDKILVKTPLLRTDNAFHDTLNND NGISCPFVLNRPDQDGEGIEAVVRFGKSIAGHPKIVHGGVTALTFDNLFG MALFLQNTGAVFTAYIKVG* back to topmRNA from alignment at Ecto-sp13_S_contig9559:97..5397- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig9559.21167.1 ID=mRNA_Ecto-sp13_S_contig9559.21167.1|Name=mRNA_Ecto-sp13_S_contig9559.21167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5301bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9559:97..5397- (Ectocarpus species13 EcNAP12_S_4_19m) ATGGCATTCCGGTGTCTGCTGGCCCGTGGCCGCCATTTGTCTACCTCCTT
CCTCACCTGGAGATATAGCACTCGACAACGTACCACCTCATCAGCAGCAT
CAGCAGCAGCAGCAGCAGTAGCTGTCCCTGGCTCTCGCACATCAGTTTCA
GCAATTCCGGGGGGCCTTCTGCTATTGACTACCATGGTTGTGAGCTGGGA
AAGAGAGTCTGGGGAGGTGCAGTGCGATTCGGTCACAGACGAGGAAGGTG
TGTGACGGTGTACGACAGCAGTAGGTTTGGGCCTGTATGGGGTGCGTGAG
GGAACTGGCATTGCCCTTGATATGCGGCGATGACGCTGCCTGTTGCTGTT
TCTGTAGATCGCCATCTGTATTTTTAGTACAACGGCCCCGCCCTCTGCTG
TTTGGAATTTGGAACAGCCGATCACAGCAGCAACATAACGAACGAGCACG
TGTTCCAGCGTATTCTTCACCTCTCCCGGTGCTCCTGCGCGTCTGAATCC
CCCTCCGATGCAATCCGATGCGATGCGGTGTTTTGCATTTTGTAGTTTTC
CAACCGGTCGGGGATTGGAGTCTAGAAATACCCCGCGAGCTGCATCTCGG
CCTACAAGGCACCAATTGATGTAGGACATGCACAACGGTGTTGCTGCGTT
TTGAGGCTATCGTGGCACCCATCGTACAGCCGAACGGATCAGGTTTGGTG
CAGCCATGGCTGATGGGGGAAATTTATCAGCTGCCCCGACCTGCCCCACC
CGTCGGGTACATAGCTTTCAATACCTCACCAGCTGCATCTGGCCCTACAA
GGCTCCAACAGCCACACAAATCACGGTAGGGGTGTTTGGTACATGAATGC
ACAGCACACAGGAGCGGACAGGAGGTGGGGCGGCGAGCCCGTCAAATTCC
CACCAACACAGTATTTTCAGACACCAATCCCCCACCGGTGAGGGAAACTA
CGAAATACCCCATCGGTGGGTGATGAAGAAACATCGTCACCCTGCTTGAT
GTGTACGGCCAAGACCCAAACAGACATGCACCTGTAGGTTCCATCCACCA
CCATCCTCCCGGGTGACTCGCGCCTGAGTCTGTAGAGTTGCCCGTGTTCC
GTAAAAAATGGCGGAATTCCCCCCTACACGCTAACCCCCGCCTGTGCTGC
CGAAAATTTTGCTTTATCAGTCATGGCGGCGGCTGCGTCAATGTCTTCGG
AGAAGAGGGAGCTGAGGCGCGTGGCACTGGCGCATCTGACCAAGTCCATC
GGCACGGGGGCGGTGAGTAAACTGGCTGTTGCGCGAAATCACGCCGGCGG
AACGAAGGAGAAACAAAGAAAGGAGTCTACTTCTGAACAGCAGAGCTGTA
GTAGACTACGGTAGACTGTGGGTAGACTTCCATTCGTACTCCCGACGTGG
GTGTTTGCAGCTGCAAACGCCTCAAATAAAAAAAAACATGCAGTAACCAA
GGCAGCAATCTATCATACGACACTGCGCCGCGTTCCCTGTGAAGATCGCA
TTTTATAACACACGACATAATTGAAGGCTTTCTCCCTGATAGTTTTGTCG
TTGACCCAGTAAAGTACTACTCGGGATGAGTTGTAAAATGGATCTGCACC
TACGTGCAGATATTCTAATGCGCACCAGCTGGTATCACTGGTATACTGTA
GATGACACAAGATAATACACCACAGTGGTAACATTTTTGGGTTAAAAAAA
TATACTCTATATGTATATTATCACCGGTTGTGGTATCCTGTGGAGGGTGT
GGTATCTTGTGTTCCCGGGTGATAACGTGCAGCTCGCAGGGGCCCCCATG
GGGGCGTGATAAACCGGGGTGTGTGATAGCACGTCTGAACACCCACAGGG
TGTGTTTCGGGGTGTGATAATTGAGGAGGTGTGATGAAGGGGGTGTGATG
TTCATTGTAGCATGTCCGAACACCCACAGGGTGTGTTTGAGGGTGTGGTA
ATGAGGGGGTGTCCACCAACACCAGCTGAGAGGCTTTGGTAGTGCGTGTT
GACTCGTCTGGGGTAGTCGCACGTGCTGCTGAGAGCGAGTCAGCAACCGG
CGGTTGGTGAGGCGAGGCGGTGGCTGTCATGTTGGTGCCTGCTGCTGCGC
CAGCTGCTGCTGCTGTTGATCTAATGATCAGCAGCAGCAGGAGGAGGAGC
CGTAGCAGGAGCCGCTTGCGTAGAAGTAGTGTGCTCGGCTTGAAAGAACA
AGATGATCTGTTGCGCCTGTGCTGCGGTCGAAGCAGTTGTGCGAGAAGCG
GACGTACTTGCAGCGCGGCAGCCTGCTCTTCCTCCTGCACGTTCATGCTG
TTGAAGGTCTCCAAGCGGGGCGTTTCCCGCCCACGGAGGGTATGTGTTGT
GTGTGACGTCCACAGGGGCAGATGCTGTCACCCCGGTGATGAAAGGCGGG
GCCCCTTGAATGTATGCGGCGTACAAGTATCCTTATTTTATCAACGGGGT
GTGTTATCTTGTGTATCCCGGGTGATAAATCGATCATTTGTCATAAACGC
CCAAAAGTATCACAGGGGTGTCGTTTTCTGTGGGGCGTGTGGTTTCTTAT
TAGTATAGGTGTGTTATCGGGTGTCATTTACGGTAATTCAGTGAATAGAC
TTGAACAGACTCGAAATAAGTCCAGGTTCCAGCTGGTTTACCTCCACTTG
CTGAAATGACTTCAGCATATATCAACTGTGGTTTATCTCTCACACGGGTA
GTCTTCCTGTGTGTTTGTGGATATTTTCTAGAAACAATACCGCCGTGTAC
ATGCATCCGCCAACACCATTTCCAGGAATGTTACAATGCTATCAGAAGGG
TGCGATACCCAGCTGTCACGGAAGCCCCTTCTCTGTATCCTTGCCAGAAA
CGACCTAAATGTAGTCGTGCCACGCTACATATCTCGCAGAGGGCAAGCAC
TTGCGATTTCGTATCGTGTTTTAGAGACCAAGTGAAAATATCTTGGACCA
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNCATGATGATCATCGGCGGTCACACCGCATGCATTCATG
GCACGGAGCCCCTGCATACCCCGTACTTGCAAATCATTCAAACCAGGGGG
GGGTGGGGGGCAACGCCTCCGGACATATGGTCCGTCGTGGTCCTCCGATC
CACTTTGTAACCCTTCTCTTCGGTGCACTTTTCTCGGGGTAGGAGGGGTT
GTTCTGAATTTCAAAAGCACCGTAAAAAAAAGTCTCTCCAGGCACAGAAA
TCTAAGGATTGTTTGCTTCGAGTGGCCAGAGAGGGTTCGGCAATCATGAC
TAAAAAATTCTGTTGTTTGCTGAAGAAAAAAGGGCGCGGATCCGTCATAG
ATAGAAGCGTGCCACCAACATCAGTCTCGCTATTTATGTTTTGCCCCTCC
GCTGGTACAAACAGGTGAAGAGCTCCCGCTGCTTTCTCACTGCCGTCCCA
CTACAGGCCGTTTCGGTCCGTATGCTATGTTGACACGCATGCCTGTTCCT
CGAAAGGCAGGCGAGCGGTTCCCTCGGGCTGCTCGCCGCAGTTTGATTCG
GGCGTGGAACTCATGTCGCACGCACAAAGTGCAAGCTTGCGCCTACCTCT
AGCGTTGTTCGTAGGCCGATCGGTGGTGTTCGAAAGCCGCGTTTTTCGCT
CACTGTTTGGGTGTGACCTCCCTGTCCTGACATTAACTCCCGCAGGTTAC
CGACAACCTCAACAACCAAAGCCAAGATTCAACGGTAGGTGTGTATGAGG
AGGGGGGCGGGGTTGGTGGCACCGTCGCCCTTGCGGCGGCTCTGCTGCGA
CCCGGCGAGAGGGAGGACGAGGAGGCCAGCCAATCAGATGGAGGAGAGGA
GGACACGGTGCCGCTGCCCCCGAACGTGCACGACGTAGACAAGATCTTGG
TCAAGACGCCACTGCTGCGGACCGACAACGCGTTCCACGATACCTTGAAC
AGTGAGACAATTTCCTCGTTCTTTTGTGTATCGTTGTGTTCAGTGTTTGC
CTTGACAGCAGCAGCAAGACTGCGGGTGGGAAGGGTGGGCAATTCCACAG
GGCGATATCCTCAACGAGATCTCCTGGCCACTTCTTTGTTTAAGGTTTTT
TGGTGTTTTCGTGGAGTTGCAAACATTTTCGTTTCTCCAAAAGAGTGTGG
AGCGTCAGCTTGTGTTAGGACTTAAGAGTACCGCTCTCTACGCAAAGGTG
GAGAGCGTTTCATTGTCGAAGGGGTATTTGCAAACTGTGACATGGACTGT
GGGGTGTCTGATGGAACAAAATTGGCGGGACGGGGACGGGTTGTAATGGC
GTACGGAGACCCTGAAGGGGGAGAGGAAGCAAGCGAAGTGAGAAGGGAGG
AGTGGCAAAGAGGAGGAGAAAGAGAGAACGGACGTGGAACCGACAGCCAA
AAGTTCCGAATGTTCGGACGTCGCTCAGACACGATCCGTACATGACCTCC
CTCCAACCTCTTTCATCTCCTGCTTATCTGCTTGCATGGAGACCTCGTTT
ACCTTGGTTGGGCATCCGACACCTCTGGATGTGTAAAAAAGCAGTGTTTC
CGCCGCAACCCCCCGGCGCGTCTTTCTTACGCTCGTTCTCCAGACGACAA
TGGCATCAGCTGCCCGTTTGTGCTCAACAGACCGGACCAGGATGGCGAGG
GAATCGAAGCCGTGGTGCGATTCGGAAAGTCTATCGCTGGGCACCCAAAG
GTTCGTGTGTTTGCGCGAGTGCGTGTCTGTATTTTTTGGCGTGTGTCGCC
CCGACCGGCTGACCAATGAAAACGTGCGATCCCGCGTGCGGGAGGGTGGC
GAGCTACTGGCTGCTGTGGTGTCAAGTTTTTTTTGAAGTATTTCTCTACT
GCTCTCCTACCGTCGCTGTCAAGTCACGGCACGTTCTCCCCGTCATACAA
TACAACCCCCCCTCGGCCCAAATTTGCTGGTTTCCGTTCGCAGATCGTTC
ACGGTGGGGTGACGGCACTGACGTTCGACAACCTCTTCGGAATGGCGCTG
TTCTTGCAGAACACTGGCGCCGTGTTCACGGCGTACATCAAGGTTGGCTA
A back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig9559:97..5397- >mRNA_Ecto-sp13_S_contig9559.21167.1 ID=mRNA_Ecto-sp13_S_contig9559.21167.1|Name=mRNA_Ecto-sp13_S_contig9559.21167.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=810bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9559:97..5397- (Ectocarpus species13 EcNAP12_S_4_19m) ATGGCATTCCGGTGTCTGCTGGCCCGTGGCCGCCATTTGTCTACCTCCTT CCTCACCTGGAGATATAGCACTCGACAACGTACCACCTCATCAGCAGCAT CAGCAGCAGCAGCAGCAGTAGCTGTCCCTGGCTCTCGCACATCAGTTTCA GCAATTCCGGGGGGCCTTCTGCTATTGACTACCATGGTTGTGAGCTGGGA AAGAGAGTCTGGGGAGGTGCAGTGCGATTCGGTCACAGACGAGGAAGTCA TGGCGGCGGCTGCGTCAATGTCTTCGGAGAAGAGGGAGCTGAGGCGCGTG GCACTGGCGCATCTGACCAAGTCCATCGGCACGGGGGCGGTTACCGACAA CCTCAACAACCAAAGCCAAGATTCAACGGTAGGTGTGTATGAGGAGGGGG GCGGGGTTGGTGGCACCGTCGCCCTTGCGGCGGCTCTGCTGCGACCCGGC GAGAGGGAGGACGAGGAGGCCAGCCAATCAGATGGAGGAGAGGAGGACAC GGTGCCGCTGCCCCCGAACGTGCACGACGTAGACAAGATCTTGGTCAAGA CGCCACTGCTGCGGACCGACAACGCGTTCCACGATACCTTGAACAACGAC AATGGCATCAGCTGCCCGTTTGTGCTCAACAGACCGGACCAGGATGGCGA GGGAATCGAAGCCGTGGTGCGATTCGGAAAGTCTATCGCTGGGCACCCAA AGATCGTTCACGGTGGGGTGACGGCACTGACGTTCGACAACCTCTTCGGA ATGGCGCTGTTCTTGCAGAACACTGGCGCCGTGTTCACGGCGTACATCAA GGTTGGCTAA back to top
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