mRNA_Ecto-sp13_S_contig954.21148.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig954.21148.1
Unique NamemRNA_Ecto-sp13_S_contig954.21148.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig954.21148.1 vs. uniprot
Match: Q8QNA3_ESV1K (EsV-1-184 n=2 Tax=root TaxID=1 RepID=Q8QNA3_ESV1K)

HSP 1 Score: 87.4 bits (215), Expect = 6.350e-18
Identity = 55/166 (33.13%), Postives = 89/166 (53.61%), Query Frame = 1 
Query:   16 ADLSRMKQEVVYENYWTDSSLGLIENWYNKCEQAASDHTEAALRARRLNVRVALPSIILGAAATGLAFFSVGDEGNDTSQSEAT-AVSVSLAVLTSAFSVVGGMSSLFSLSERQSQHIAAAAGFSNLAKKIQVHLFLPMELRSQCEVVLTDISGEYTSLVTTSPLL 510
            A LS  ++E +Y+N W +S L L+EN   +C Q++  H EAA   RR    + +PSII+                           +   +A LT+   ++ G++S+++   + S++IAAA  F+NLA++ ++  FLP+ L+   EV LTDIS E   L ++SPLL
Sbjct:   72 ARLSHFQKEKLYQNDWNNSVLDLMENLLYECTQSSKAHAEAARGCRRKYRMLMIPSIIVAXXXXXXXXXXXXXXXXXXXXXXXXDGLKYVVASLTALVGIMSGIASVYNFKSKMSENIAAAGAFANLARRCKIICFLPIHLKPNSEVALTDISAEQAHLTSSSPLL 237
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig954.21148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QNA3_ESV1K6.350e-1833.13EsV-1-184 n=2 Tax=root TaxID=1 RepID=Q8QNA3_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig954contigEcto-sp13_S_contig954:17789..18313 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size525
Hectar predicted targeting categoryother localisation
Exons1
Cds size495
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464219.3489945-CDS-Ecto-sp13_S_contig954:17788..182831681464219.3489945-CDS-Ecto-sp13_S_contig954:17788..18283Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig954 17789..18283 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464219.3590791-UTR-Ecto-sp13_S_contig954:18283..183131681464219.3590791-UTR-Ecto-sp13_S_contig954:18283..18313Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig954 18284..18313 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig954.21148.1prot_Ecto-sp13_S_contig954.21148.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig954 17789..18283 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig954.21148.1

>prot_Ecto-sp13_S_contig954.21148.1 ID=prot_Ecto-sp13_S_contig954.21148.1|Name=mRNA_Ecto-sp13_S_contig954.21148.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=165bp
MKQEVVYENYWTDSSLGLIENWYNKCEQAASDHTEAALRARRLNVRVALP
SIILGAAATGLAFFSVGDEGNDTSQSEATAVSVSLAVLTSAFSVVGGMSS
LFSLSERQSQHIAAAAGFSNLAKKIQVHLFLPMELRSQCEVVLTDISGEY
TSLVTTSPLLYLGC*
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mRNA from alignment at Ecto-sp13_S_contig954:17789..18313-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig954.21148.1 ID=mRNA_Ecto-sp13_S_contig954.21148.1|Name=mRNA_Ecto-sp13_S_contig954.21148.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=525bp|location=Sequence derived from alignment at Ecto-sp13_S_contig954:17789..18313- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGAAGAGCAACAAGGCCGACCTCTCGCGGATGAAGCAAGAGGTAGTGTA
CGAGAATTATTGGACTGACAGCAGCCTCGGGTTGATTGAGAACTGGTACA
ACAAGTGCGAACAGGCTGCTAGCGATCATACGGAGGCGGCATTGCGTGCC
CGCCGACTGAACGTGCGCGTTGCTCTGCCCAGCATCATTTTGGGGGCCGC
CGCGACGGGACTGGCATTTTTTTCGGTTGGCGACGAGGGTAACGACACAA
GCCAGTCTGAAGCAACCGCCGTGAGTGTTTCTCTTGCCGTCCTCACATCG
GCTTTCTCGGTTGTGGGTGGAATGAGCTCTCTCTTTTCTCTGTCTGAGCG
ACAGAGCCAGCACATTGCTGCTGCGGCTGGGTTTTCAAACCTCGCAAAGA
AAATTCAAGTTCATCTCTTCTTGCCTATGGAACTACGTTCGCAGTGCGAA
GTGGTGCTCACGGACATCTCGGGCGAGTATACGAGCTTAGTGACAACCAG
CCCGCTCTTGTACCTAGGATGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig954:17789..18313-

>mRNA_Ecto-sp13_S_contig954.21148.1 ID=mRNA_Ecto-sp13_S_contig954.21148.1|Name=mRNA_Ecto-sp13_S_contig954.21148.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=495bp|location=Sequence derived from alignment at Ecto-sp13_S_contig954:17789..18313- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCAAGAGGTAGTGTACGAGAATTATTGGACTGACAGCAGCCTCGG
GTTGATTGAGAACTGGTACAACAAGTGCGAACAGGCTGCTAGCGATCATA
CGGAGGCGGCATTGCGTGCCCGCCGACTGAACGTGCGCGTTGCTCTGCCC
AGCATCATTTTGGGGGCCGCCGCGACGGGACTGGCATTTTTTTCGGTTGG
CGACGAGGGTAACGACACAAGCCAGTCTGAAGCAACCGCCGTGAGTGTTT
CTCTTGCCGTCCTCACATCGGCTTTCTCGGTTGTGGGTGGAATGAGCTCT
CTCTTTTCTCTGTCTGAGCGACAGAGCCAGCACATTGCTGCTGCGGCTGG
GTTTTCAAACCTCGCAAAGAAAATTCAAGTTCATCTCTTCTTGCCTATGG
AACTACGTTCGCAGTGCGAAGTGGTGCTCACGGACATCTCGGGCGAGTAT
ACGAGCTTAGTGACAACCAGCCCGCTCTTGTACCTAGGATGTTAA
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