mRNA_Ecto-sp13_S_contig95.21119.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig95.21119.1
Unique NamemRNA_Ecto-sp13_S_contig95.21119.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig95.21119.1 vs. uniprot
Match: A0A3B8JJF2_9CYAN (Tetratricopeptide repeat-containing protein (Fragment) n=1 Tax=Cyanobacteria bacterium UBA8553 TaxID=2055771 RepID=A0A3B8JJF2_9CYAN)

HSP 1 Score: 54.7 bits (130), Expect = 5.460e-7
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 2 
Query:  197 NSATLYTTACQGIYAEAEPLYAQCQAIFEKTLGSGHPNVATLLNNRAEM 343
            N A LY    QG Y++AEPLY +  AI+EK LGS HPNVAT LNN A++
Sbjct:    1 NLAALYKV--QGNYSQAEPLYQRSLAIWEKALGSEHPNVATSLNNLADL 47
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BLAST of mRNA_Ecto-sp13_S_contig95.21119.1 vs. uniprot
Match: A0A6H5K3K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3K8_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 1.400e-6
Identity = 27/44 (61.36%), Postives = 32/44 (72.73%), Query Frame = 2 
Query:  227 QGIYAEAEPLYAQCQAIFEKTLGSGHPNVATLLNNRAEMLSKQM 358
            QG Y EAEPLY + QAI EK LG  HP+VA+ LNNR E+L  Q+
Sbjct:   18 QGKYMEAEPLYERSQAIQEKVLGLEHPDVASSLNNRVELLRAQV 61
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BLAST of mRNA_Ecto-sp13_S_contig95.21119.1 vs. uniprot
Match: A0A6H5K5H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5H9_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.450e-6
Identity = 28/45 (62.22%), Postives = 34/45 (75.56%), Query Frame = 2 
Query:  212 YTTACQGIYAEAEPLYAQCQAIFEKTLGSGHPNVATLLNNRAEML 346
            Y   CQG YAEA+PLY + QAI +K LG  HP+VAT+LNNRA +L
Sbjct:  200 YEYICQGNYAEAKPLYERSQAIRKKVLGPDHPDVATVLNNRAGLL 244
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BLAST of mRNA_Ecto-sp13_S_contig95.21119.1 vs. uniprot
Match: A0A6H5JIH9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIH9_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 1.010e-5
Identity = 32/55 (58.18%), Postives = 36/55 (65.45%), Query Frame = 2 
Query:  188 SASNSATLYT------TACQGIYAEAEPLYAQCQAIFEKTLGSGHPNVATLLNNR 334
            S+S SA+ Y       TACQG YAE EPLY Q QAI EK LG  HP+VAT+L  R
Sbjct: 1260 SSSGSASRYLPWLSVRTACQGKYAEPEPLYEQSQAITEKVLGPEHPDVATVLKKR 1314
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BLAST of mRNA_Ecto-sp13_S_contig95.21119.1 vs. uniprot
Match: A0A6H5KHN5_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHN5_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 4.600e-5
Identity = 32/77 (41.56%), Postives = 41/77 (53.25%), Query Frame = 2 
Query:  116 RHISGNGSAPHNEEKVIETTLGLNSASNSATLYTTACQGIYAEAEPLYAQCQAIFEKTLGSGHPNVATLLNNRAEML 346
            R +  NG+    E  +     GL              +G YAEAE LYAQCQAI EK LG  HP++AT L+N A++L
Sbjct: 1735 RGVEDNGNTESREASLRSAKAGLGCV--------LGLKGKYAEAEALYAQCQAIEEKVLGPEHPSLATTLHNLADLL 1803
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig95.21119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A3B8JJF2_9CYAN5.460e-759.18Tetratricopeptide repeat-containing protein (Fragm... [more]
A0A6H5K3K8_9PHAE1.400e-661.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5H9_9PHAE1.450e-662.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JIH9_9PHAE1.010e-558.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHN5_9PHAE4.600e-541.56CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig95contigEcto-sp13_S_contig95:29519..30134 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size616
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464217.5673563-UTR-Ecto-sp13_S_contig95:29518..295611681464217.5673563-UTR-Ecto-sp13_S_contig95:29518..29561Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig95 29519..29561 +
1681464217.588846-UTR-Ecto-sp13_S_contig95:29906..301341681464217.588846-UTR-Ecto-sp13_S_contig95:29906..30134Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig95 29907..30134 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464217.5784335-CDS-Ecto-sp13_S_contig95:29561..299061681464217.5784335-CDS-Ecto-sp13_S_contig95:29561..29906Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig95 29562..29906 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig95.21119.1prot_Ecto-sp13_S_contig95.21119.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig95 29562..29906 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig95.21119.1

>prot_Ecto-sp13_S_contig95.21119.1 ID=prot_Ecto-sp13_S_contig95.21119.1|Name=mRNA_Ecto-sp13_S_contig95.21119.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
MRKKHFSAVVDQCFCWIPTLWCIVRHISGNGSAPHNEEKVIETTLGLNSA
SNSATLYTTACQGIYAEAEPLYAQCQAIFEKTLGSGHPNVATLLNNRAEM
LSKQMRDVYQFEDS*
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mRNA from alignment at Ecto-sp13_S_contig95:29519..30134+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig95.21119.1 ID=mRNA_Ecto-sp13_S_contig95.21119.1|Name=mRNA_Ecto-sp13_S_contig95.21119.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=616bp|location=Sequence derived from alignment at Ecto-sp13_S_contig95:29519..30134+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGATACAGCTCAACAACTGGGCGGCATCGTTGTACCGGCAGATGAGAA
AGAAACATTTCTCCGCAGTTGTAGATCAATGTTTTTGCTGGATTCCGACT
CTTTGGTGCATTGTTCGCCACATATCAGGAAATGGTTCTGCGCCCCACAA
CGAGGAAAAGGTGATTGAGACCACCCTTGGATTGAACTCTGCATCTAACT
CTGCCACGCTGTATACAACTGCATGCCAGGGTATATACGCTGAGGCTGAA
CCTCTGTATGCACAGTGCCAGGCGATTTTCGAAAAAACCTTGGGTTCGGG
GCACCCGAACGTGGCCACATTGCTCAACAACCGGGCCGAGATGTTGAGCA
AGCAGATGAGAGACGTCTACCAATTCGAGGATAGTTGACGGGATGTCCAT
CTCTGATGGTGGTTAAGTGTTTCTTGTCGTGGGTTGGCCACTGGCTTACA
CCAACGTGTCAAATTGAGAAATTTGAGAGAAATGGAGACATTTGCGAAAA
ACGGACACATTTGCGAGAAATGGAGACATTTGCGAGAAATGGAGACATTT
GAGAGATTCTCTGGGCGGGATCACCCCAATGCCGCAACAATTGGAAGTCC
CAGGTGAGAACCCGAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig95:29519..30134+

>mRNA_Ecto-sp13_S_contig95.21119.1 ID=mRNA_Ecto-sp13_S_contig95.21119.1|Name=mRNA_Ecto-sp13_S_contig95.21119.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig95:29519..30134+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAAAGAAACATTTCTCCGCAGTTGTAGATCAATGTTTTTGCTGGAT
TCCGACTCTTTGGTGCATTGTTCGCCACATATCAGGAAATGGTTCTGCGC
CCCACAACGAGGAAAAGGTGATTGAGACCACCCTTGGATTGAACTCTGCA
TCTAACTCTGCCACGCTGTATACAACTGCATGCCAGGGTATATACGCTGA
GGCTGAACCTCTGTATGCACAGTGCCAGGCGATTTTCGAAAAAACCTTGG
GTTCGGGGCACCCGAACGTGGCCACATTGCTCAACAACCGGGCCGAGATG
TTGAGCAAGCAGATGAGAGACGTCTACCAATTCGAGGATAGTTGA
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