mRNA_Ecto-sp13_S_contig9492.21113.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9492.21113.1 vs. uniprot
Match: A0A6H5L631_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L631_9PHAE) HSP 1 Score: 140 bits (353), Expect = 2.240e-36 Identity = 74/85 (87.06%), Postives = 76/85 (89.41%), Query Frame = 2
Query: 1124 MLTGTAAPSPPQPKY*MSTAAPASSTGLESLLPTVQSRSIALSARMGRRERMAWSGPRYTCTVRPAGTVQCFTRTMSIS*GKAGN 1378
MLT TAAPSPPQP + MSTAAPASSTGLE LLPTVQS S ALSA MG+RERMAWSGPRYT TVRPAGTVQCFTRTMSIS GKAGN
Sbjct: 1 MLTSTAAPSPPQPNHLMSTAAPASSTGLEDLLPTVQSSSKALSAPMGKRERMAWSGPRYTSTVRPAGTVQCFTRTMSISWGKAGN 85
BLAST of mRNA_Ecto-sp13_S_contig9492.21113.1 vs. uniprot
Match: D8LU81_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU81_ECTSI) HSP 1 Score: 119 bits (297), Expect = 9.100e-29 Identity = 62/69 (89.86%), Postives = 62/69 (89.86%), Query Frame = 2
Query: 1172 MSTAAPASSTGLESLLPTVQSRSIALSARMGRRERMAWSGPRYTCTVRPAGTVQCFTRTMSIS*GKAGN 1378
MSTAAPASSTGLE LLPTVQS SIALS RMGRRERMAWSGPRYT TVRPAGT QC TRTMSIS GKAGN
Sbjct: 1 MSTAAPASSTGLEGLLPTVQSSSIALSGRMGRRERMAWSGPRYTFTVRPAGTAQCVTRTMSISWGKAGN 69
BLAST of mRNA_Ecto-sp13_S_contig9492.21113.1 vs. uniprot
Match: D8LU80_ECTSI (Carboxyl ester lipase (Bile salt-stimulated lipase), isoform CRA_b n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU80_ECTSI) HSP 1 Score: 89.0 bits (219), Expect = 8.310e-17 Identity = 47/52 (90.38%), Postives = 47/52 (90.38%), Query Frame = -2
Query: 1659 SKPDQNVRKSSLRACMEPWSSNIGAASRPFLPLESSIPLLSPSKARAGAATG 1814
SKPDQNVRKSSLRA MEPWSSN AASRPF PLESSIPLLSPS ARAGAATG
Sbjct: 130 SKPDQNVRKSSLRASMEPWSSNTRAASRPFPPLESSIPLLSPSLARAGAATG 181
BLAST of mRNA_Ecto-sp13_S_contig9492.21113.1 vs. uniprot
Match: UPI001F1F2B9F (hypothetical protein n=1 Tax=Sinobacterium norvegicum TaxID=1641715 RepID=UPI001F1F2B9F) HSP 1 Score: 63.5 bits (153), Expect = 1.070e-8 Identity = 39/121 (32.23%), Postives = 53/121 (43.80%), Query Frame = 1
Query: 1300 HVHGAACGHRAVLHENHVDFLREGGQLECYAGKERIGGDWVSVIKEGGXXXXXXCGCDDSSKKESNGPGKPTN-ALVHWDGARFDRTRDRCESNNHGPHCGHEVVHHDGHLDYVVNGRLLH 1659
H HG+ CGH A+ H +H+D+L +G + G CD+ S + SN TN A H C + HGP CGHE + HD H D++V+GRL H
Sbjct: 12 HTHGSNCGHTAIRHGDHIDYLADGKLHHPHGGH-----------------------CDEHSIELSN-----TNPAQCH--------PTQGCAGHVHGPDCGHEAIQHDDHTDFIVDGRLHH 96
BLAST of mRNA_Ecto-sp13_S_contig9492.21113.1 vs. uniprot
Match: A0A7C4BV65_9BACT (Uncharacterized protein n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=A0A7C4BV65_9BACT) HSP 1 Score: 62.8 bits (151), Expect = 2.320e-8 Identity = 37/124 (29.84%), Postives = 47/124 (37.90%), Query Frame = 1
Query: 1291 AKVHVHGAACGHRAVLHENHVDFLREGGQLECYAGKERIGGDWVSVIKEGGXXXXXXCGCDDSSKKESNGPGKPTNALVHWDGARFDRTRDRCESNNHGPHCGHEVVHHDGHLDYVVNGRLLHP 1662
A H+HG CGH+AVLH +HVD+L +G VS G CG + + HGP CGHE + H H+DY+V G L HP
Sbjct: 10 AHAHIHGPGCGHKAVLHGDHVDYLHDGXXXXXXXXXXDEHAIEVSARNPGVCTPQHACGAHEPAHV-------------------------------HGPGCGHEAIPHGDHVDYLVAGHLHHP 102
BLAST of mRNA_Ecto-sp13_S_contig9492.21113.1 vs. uniprot
Match: UPI000A05AADA (hypothetical protein n=1 Tax=Coraliomargarita akajimensis TaxID=395922 RepID=UPI000A05AADA) HSP 1 Score: 61.6 bits (148), Expect = 5.330e-8 Identity = 37/121 (30.58%), Postives = 52/121 (42.98%), Query Frame = 1
Query: 1300 HVHGAACGHRAVLHENHVDFLREGGQLECYAGKERIGGDWVSVIKEGGXXXXXXCGCDDSSKKESNGPGKPTNALVHWDGARFDRTRDRCESNNHGPHCGHEVVHHDGHLDYVVNGRLLHP 1662
H HG CGH A+ H +HVD+L + G L + ++V +++ P N H DG + HGP CGHE + H H+DY+V+GRL HP
Sbjct: 11 HQHGKGCGHTAIQHGDHVDYLHD-GHLHHQNADGTVEKHILAV--------------------DASHPSGCCNHATHSDG------------HVHGPDCGHEAIQHGDHIDYIVDGRLHHP 98
BLAST of mRNA_Ecto-sp13_S_contig9492.21113.1 vs. uniprot
Match: A0A380MVT5_9GAMM (Uncharacterized protein n=1 Tax=Suttonella indologenes TaxID=13276 RepID=A0A380MVT5_9GAMM) HSP 1 Score: 62.0 bits (149), Expect = 6.840e-8 Identity = 44/129 (34.11%), Postives = 57/129 (44.19%), Query Frame = 1
Query: 1300 HVHGAACGHRAVLHENHVDFLREGGQL--------ECYAGKERIGGDWVSVIKEGGXXXXXXCGCDDSSKKESNGPGKPTNALVHWDGARFDRTRDRCESNNHGPHCGHEVVHHDGHLDYVVNGRLLHP 1662
HVHG CGH A+ H +HVD+L E Y D + +K+ G GCD + N H + A+ R+ HGP+CGHE V H H+DY+VNGRL HP
Sbjct: 11 HVHGKDCGHTAIQHGDHVDYLXXXXXXXXXXXXXXEHYLEVNAQNPDQCTAMKDCGCV----AGCDXXCEAG--------NCDCHQN-AQGCHDREHV----HGPNCGHEAVPHGDHVDYLVNGRLHHP 122
BLAST of mRNA_Ecto-sp13_S_contig9492.21113.1 vs. uniprot
Match: A0A0K1NBC6_9BURK (Uncharacterized protein n=2 Tax=unclassified Ottowia TaxID=2645081 RepID=A0A0K1NBC6_9BURK) HSP 1 Score: 61.6 bits (148), Expect = 7.000e-8 Identity = 39/121 (32.23%), Postives = 51/121 (42.15%), Query Frame = 1
Query: 1300 HVHGAACGHRAVLHENHVDFLREGGQLECYAGKERIGGDWVSVIKEGGXXXXXXCGCDDSSKKESNGPGKPTNALVHWDGARFDRTRDRCESNNHGPHCGHEVVHHDGHLDYVVNGRLLHP 1662
H HG CGH A+ H HVD+L+EG + G+ + VS ++N G H G + HGP CGHE V H H+D++VNGRL HP
Sbjct: 21 HQHGPGCGHTAIRHNGHVDYLQEGHLHHPHEGRVQEHSIAVS---------------------DTNPEGCTPPCAGHEPG------------HVHGPGCGHEAVPHGNHIDFLVNGRLHHP 108
BLAST of mRNA_Ecto-sp13_S_contig9492.21113.1 vs. uniprot
Match: A0A6I7Q8Z0_9BACT (Uncharacterized protein n=1 Tax=Balneolaceae bacterium TaxID=2053516 RepID=A0A6I7Q8Z0_9BACT) HSP 1 Score: 61.2 bits (147), Expect = 7.840e-8 Identity = 39/136 (28.68%), Postives = 53/136 (38.97%), Query Frame = 1
Query: 1267 TRKDGLVGAKVHVHGAACGHRAVLHENHVDFLREGGQLECYAGKERIGGDWVSVI-----KEGGXXXXXXCGCDDSSKKESNGPGKPTNALVHWDGARFDRTRDRCESNNHGPHCGHEVVHHDGHLDYVVNGRLLH 1659
T++ + G H H ACGH + HE+H+D+L +G E + + G WV + K CGC NH CGHE+V H H+DY+VNGRL H
Sbjct: 5 TKEHAVKGDHSHQHSIACGHTKIKHEDHIDYLHDG---ELHREND---GKWVKCVIPVTEKNPAESKTLPCGC------------------------------------NHTDACGHEMVPHGDHMDYLVNGRLHH 98
BLAST of mRNA_Ecto-sp13_S_contig9492.21113.1 vs. uniprot
Match: UPI000A84D30B (hypothetical protein n=1 Tax=Candidatus Thiosymbion oneisti TaxID=589554 RepID=UPI000A84D30B) HSP 1 Score: 61.2 bits (147), Expect = 8.440e-8 Identity = 38/123 (30.89%), Postives = 50/123 (40.65%), Query Frame = 1
Query: 1300 HVHGAACGHRAVLHENHVDFLREGGQLECYAGKERIGGDWVSVIKEGGXXXXXXCGCDDSSKKESNGPGKPTNALVHWDGARFDRTRDRCESNNH--GPHCGHEVVHHDGHLDYVVNGRLLHP 1662
H HG CGHRAV H +H+D+L +G + R+ D + E G CG T C+ H G CGHE + H H+DY+V+GRL HP
Sbjct: 13 HEHGPGCGHRAVRHGDHIDYLHDGHLHHAHELDNRVHYD--EHVIEVGTSNPDGCG----------------------------HTTTTCQKTGHVHGLGCGHEAIPHGDHVDYIVDGRLHHP 105 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9492.21113.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9492.21113.1 >prot_Ecto-sp13_S_contig9492.21113.1 ID=prot_Ecto-sp13_S_contig9492.21113.1|Name=mRNA_Ecto-sp13_S_contig9492.21113.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=605bp MGVCQIGLAGEKPYACVHPLCGRKFARISDLRSHERTHNADAKSFECKLCback to top mRNA from alignment at Ecto-sp13_S_contig9492:3..2463- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9492.21113.1 ID=mRNA_Ecto-sp13_S_contig9492.21113.1|Name=mRNA_Ecto-sp13_S_contig9492.21113.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2461bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9492:3..2463- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9492:3..2463- >mRNA_Ecto-sp13_S_contig9492.21113.1 ID=mRNA_Ecto-sp13_S_contig9492.21113.1|Name=mRNA_Ecto-sp13_S_contig9492.21113.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1815bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9492:3..2463- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |