mRNA_Ecto-sp13_S_contig9452.21064.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9452.21064.1
Unique NamemRNA_Ecto-sp13_S_contig9452.21064.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9452.21064.1 vs. uniprot
Match: A0A6H5L2M4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2M4_9PHAE)

HSP 1 Score: 341 bits (874), Expect = 5.020e-116
Identity = 166/176 (94.32%), Postives = 169/176 (96.02%), Query Frame = 3 
Query:  126 MFWSRRSSSCLVLLAAALVGITPGSEGFLGAPRFAVAAGRSGTAGKRGCCRTTSARQGGQVIVAANSGDSEDTAATGGDVHVVSASTATSTCRNCKQQFNPDDNVDGSCSYHPGLVSGRLNRINDVDTSGLEYFWSCCGETDPFHPGCVKGKHASYDDPPEGGDGAWRSPLTGTLR 653
            MFW RRS+SCLVLLAAALVGITPGSEGFLGAPR AVAAGRSGTAG+RGCCRTTSARQGGQVIVAANS D EDTAATGGDVH+VSASTATSTCRNCKQQFNPDDNVDGSCSYHPGL SGRLNRINDVDTSGLEYFWSCCGETDP HPGCV GKHASYDDPPEGGDGAWRSPLTGTLR
Sbjct:    1 MFWLRRSASCLVLLAAALVGITPGSEGFLGAPRSAVAAGRSGTAGRRGCCRTTSARQGGQVIVAANSRDGEDTAATGGDVHLVSASTATSTCRNCKQQFNPDDNVDGSCSYHPGLFSGRLNRINDVDTSGLEYFWSCCGETDPSHPGCVNGKHASYDDPPEGGDGAWRSPLTGTLR 176
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BLAST of mRNA_Ecto-sp13_S_contig9452.21064.1 vs. uniprot
Match: D7G2H8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H8_ECTSI)

HSP 1 Score: 327 bits (839), Expect = 2.670e-109
Identity = 161/183 (87.98%), Postives = 165/183 (90.16%), Query Frame = 3 
Query:  105 PFLSKSLMFWSRRSSSCLVLLAAALVGITPGSEGFLGAPRFAVAAGRSGTAGKRGCCRTTSARQGGQVIVAANSGDSEDTAATGGDVHVVSASTATSTCRNCKQQFNPDDNVDGSCSYHPGLVSGRLNRINDVDTSGLEYFWSCCGETDPFHPGCVKGKHASYDDPPEGGDGAWRSPLTGTLR 653
            P    SLMFWSRRS+SCLVLLAAALVG+TPGSEGFLGAP+FAVAAGRSG  G RGCCRTT ARQGGQV+VA  SGD E TAATGGDV  V  STATSTCRNCKQQFNPDDNVDGSCSYHPGL SGRLNRINDVDTSGLEYFWSCCGETDP HPGCVKGKHASYDDPPEGGDGAWRSPLTGTLR
Sbjct:   89 PPFQNSLMFWSRRSASCLVLLAAALVGVTPGSEGFLGAPQFAVAAGRSGMTGTRGCCRTTGARQGGQVVVATKSGDGEATAATGGDV--VRTSTATSTCRNCKQQFNPDDNVDGSCSYHPGLFSGRLNRINDVDTSGLEYFWSCCGETDPSHPGCVKGKHASYDDPPEGGDGAWRSPLTGTLR 269
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BLAST of mRNA_Ecto-sp13_S_contig9452.21064.1 vs. uniprot
Match: A0A0G4GZ08_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GZ08_VITBC)

HSP 1 Score: 112 bits (279), Expect = 1.060e-24
Identity = 48/83 (57.83%), Postives = 59/83 (71.08%), Query Frame = 3 
Query:  396 TCRNCKQQFNPDDNVDGSCSYHPGLVSGRLNRINDVDTSGLEYFWSCCGETDPFHPGCVKGKHASYDDPPEGGDGAWRSPLTG 644
            TCR CK+ F P+ N   +C YH G+ SGRLNR+NDVDTS LE+FWSCCGE D  HPGCV  +H S+D+  +     WRSP+TG
Sbjct:  264 TCRQCKRSFVPEHNHSLACCYHAGVFSGRLNRVNDVDTSDLEFFWSCCGEYDREHPGCVVTRHMSFDEADDAT--TWRSPMTG 344
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BLAST of mRNA_Ecto-sp13_S_contig9452.21064.1 vs. uniprot
Match: A0A0G4H9F9_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4H9F9_9ALVE)

HSP 1 Score: 107 bits (267), Expect = 1.320e-24
Identity = 51/98 (52.04%), Postives = 59/98 (60.20%), Query Frame = 3 
Query:  357 GDVHVVSASTATSTCRNCKQQFNPDDNVDGSCSYHPGLVSGRLNRINDVDTSGLEYFWSCCGETDPFHPGCVKGKHASYDDPPEGGDGAWRSPLTGTL 650
            GD    S S   STCR CK+ F    N +  C +HPG  +GRLNR+NDVDTS LE+FWSCCGE D  HPGC    H SYDD     +G   S LTG +
Sbjct:   80 GDSAPSSLSEPESTCRQCKKPFLKSQNAETGCVFHPGFYTGRLNRVNDVDTSDLEFFWSCCGEYDRGHPGCTNTHHVSYDD-----EGPTWSVLTGKI 172
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BLAST of mRNA_Ecto-sp13_S_contig9452.21064.1 vs. uniprot
Match: A0A1X6PJI3_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PJI3_PORUM)

HSP 1 Score: 101 bits (252), Expect = 1.120e-22
Identity = 41/67 (61.19%), Postives = 48/67 (71.64%), Query Frame = 3 
Query:  399 CRNCKQQFNPDDNVDGSCSYHPGLVSGRLNRINDVDTSGLEYFWSCCGETDPFHPGCVKGKHASYDD 599
            CR CKQQ++P+ N  GSC YH     GRLNRI   +TSGLEYFW CCG+TD    GCVK +H+SYDD
Sbjct:   89 CRQCKQQYDPEANEPGSCRYHGAQYRGRLNRIEPTETSGLEYFWHCCGDTDVNAEGCVKARHSSYDD 155
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BLAST of mRNA_Ecto-sp13_S_contig9452.21064.1 vs. uniprot
Match: W7TLU8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TLU8_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 3.700e-20
Identity = 42/82 (51.22%), Postives = 55/82 (67.07%), Query Frame = 3 
Query:  390 TSTCRNCKQQFNPDDNVDGSCSYHPGLVSGRLNRINDVDTSGL-EYFWSCCGETDPFHPGCVKGKHASYDDPPEGGDGAWRS 632
            T TCR C +QFNP +N   +C++HPG+ +GRL RI+D D SG  ++FWSCCG  +  HPGC    H S+DDPP    G W+S
Sbjct:   82 TKTCRACLKQFNPSENPPSACTFHPGIYTGRLARIDDTDPSGAKDFFWSCCGG-EREHPGCTHDHHRSFDDPP----GPWQS 158
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BLAST of mRNA_Ecto-sp13_S_contig9452.21064.1 vs. uniprot
Match: A0A7S1TIL7_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TIL7_9RHOD)

HSP 1 Score: 93.6 bits (231), Expect = 4.180e-20
Identity = 39/67 (58.21%), Postives = 44/67 (65.67%), Query Frame = 3 
Query:  399 CRNCKQQFNPDDNVDGSCSYHPGLVSGRLNRINDVDTSGLEYFWSCCGETDPFHPGCVKGKHASYDD 599
            CR CK Q++P  N   SC  H G  SGRLNR+NDVDTS LEYFW+CCGE      GC  G H SYD+
Sbjct:   48 CRLCKGQYDPGQNTGRSCRRHSGYYSGRLNRVNDVDTSDLEYFWNCCGEESKHAHGCEWGHHVSYDE 114
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BLAST of mRNA_Ecto-sp13_S_contig9452.21064.1 vs. uniprot
Match: A0A1Y1IN21_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IN21_KLENI)

HSP 1 Score: 66.6 bits (161), Expect = 3.030e-10
Identity = 27/78 (34.62%), Postives = 36/78 (46.15%), Query Frame = 3 
Query:  396 TCRNCKQQFNPDDNVDGSCSYHPGLVSGRLNR----------INDVDTSGLEYFWSCCGETDPFHPGCVKGKHASYDD 599
            TC+ CKQQ++P+ N   +C YH     G   R          +   D   +  +W CCG  DP  PGC    H SYD+
Sbjct:   30 TCKQCKQQYDPESNHPRACKYHTAHYGGETRRKFESVYEGGTLTTADGGKITAYWHCCGNQDPTDPGCEAAPHRSYDE 107
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9452.21064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5L2M4_9PHAE5.020e-11694.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2H8_ECTSI2.670e-10987.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A0G4GZ08_VITBC1.060e-2457.83Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A0G4H9F9_9ALVE1.320e-2452.04Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A1X6PJI3_PORUM1.120e-2261.19Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
W7TLU8_9STRA3.700e-2051.22Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S1TIL7_9RHOD4.180e-2058.21Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A1Y1IN21_KLENI3.030e-1034.62Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9452contigEcto-sp13_S_contig9452:2461..4556 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score327.0
Seed ortholog evalue5.4e-87
Seed eggNOG ortholog2880.D7G2H8
Model size953
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG OGs2BDDZ@1,2S12C@2759
Cds size531
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464213.2958202-UTR-Ecto-sp13_S_contig9452:2460..27571681464213.2958202-UTR-Ecto-sp13_S_contig9452:2460..2757Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9452 2461..2757 -
1681464213.3452172-UTR-Ecto-sp13_S_contig9452:4431..45561681464213.3452172-UTR-Ecto-sp13_S_contig9452:4431..4556Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9452 4432..4556 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464213.3081472-CDS-Ecto-sp13_S_contig9452:2757..29591681464213.3081472-CDS-Ecto-sp13_S_contig9452:2757..2959Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9452 2758..2959 -
1681464213.319875-CDS-Ecto-sp13_S_contig9452:3517..36711681464213.319875-CDS-Ecto-sp13_S_contig9452:3517..3671Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9452 3518..3671 -
1681464213.3303583-CDS-Ecto-sp13_S_contig9452:4256..44311681464213.3303583-CDS-Ecto-sp13_S_contig9452:4256..4431Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9452 4257..4431 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9452.21064.1prot_Ecto-sp13_S_contig9452.21064.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9452 2758..4431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9452.21064.1

>prot_Ecto-sp13_S_contig9452.21064.1 ID=prot_Ecto-sp13_S_contig9452.21064.1|Name=mRNA_Ecto-sp13_S_contig9452.21064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=177bp
MFWSRRSSSCLVLLAAALVGITPGSEGFLGAPRFAVAAGRSGTAGKRGCC
RTTSARQGGQVIVAANSGDSEDTAATGGDVHVVSASTATSTCRNCKQQFN
PDDNVDGSCSYHPGLVSGRLNRINDVDTSGLEYFWSCCGETDPFHPGCVK
GKHASYDDPPEGGDGAWRSPLTGTLR*
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mRNA from alignment at Ecto-sp13_S_contig9452:2461..4556-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9452.21064.1 ID=mRNA_Ecto-sp13_S_contig9452.21064.1|Name=mRNA_Ecto-sp13_S_contig9452.21064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2096bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9452:2461..4556- (Ectocarpus species13 EcNAP12_S_4_19m)
ATCCCGTCTCCCTTTCTTTTCATCTCTGTCGCTTCAAGCGTCTTATCCTG
CTGGCTGCGGGATTACAGCAGTTTTTGGCGCAGTACGCTCTCTTGGACGT
TCAACCCTTTCTTTCAAAATCGCTCATGTTTTGGTCACGACGCAGTTCGT
CGTGCCTGGTGCTGCTGGCTGCGGCGCTCGTGGGGATTACTCCAGGATCT
GAAGGCTTCCTTGGCGCACCTCGGTTCGCTGTCGCTGCTGGTCGGTCGGG
TACGGCGGGAAAAAGGGGTTGCTGCAGAACAACGAGCGCGCGGCAAGGAG
GTTGGTGTGCACTCCGGTTGCTCTTCATTGTCATGTGTTCTGCTGTGCTG
TGGACCTCTATTGCGGCAACGGCAAAATTCTCTTGAAGGTGTAGTCCACA
CACACTTCTCTATCAGTGCGTTCCTTTCACACAAGCACCCTAATGCTGGA
ATGTTTTGTTCGGACTACAATAGAAACCCAACACCTCGTGCACTGCACCA
AACTGCTTCTTTTATGTACACCTCCGACGGCGTGGACATGTGTAGCTCTT
GTACAGAGCGCACGTACGAACAGAGGTCCTGCAACTCATCAGGATGGCCG
CATATGTGTCATGTGTCTTGTCAATAATGTCGGTTGGCATCGATCATGCG
TACAACTGCAACCCACAATTGGAAAGAGTAACCACACACACATACTACTG
CATGTTGGAGTGTTCGCCGCTACTACTTCGCGAGAATCTAATCCAGCCCC
CCCCCCCACCCCCCCCTCGCGCGCGCCTTTTCGTCCCCCCGTGGAACCAA
CGAAATATTCATGCATACGACGTTGTCTTCTGCTGTGGAACCCATGACAA
ATGCAACCCTTTATTCGACAACCAACGTTGGTCAGGACAAGTGATAGTCG
CAGCAAACAGCGGCGACAGTGAGGATACAGCGGCAACCGGAGGCGACGTA
CATGTAGTGAGCGCCTCTACTGCCACTTCCACCTGCCGTAACTGCAAGCA
ACAGTTCAACCCAGACGACAACGTTGACGGATCTTGCTCGTGAGTTCTAG
GCTGTTGGTCCATCGGATGCGTGAGCTGGTAGCTGCTTGCGTCCTGTTTG
TTTGGGCGTACCGACGTGGGTGTTGGTGTCCGCATGTGTTGGGCAGAACC
TGACCGTTATGAATGGGGCGGATGGACGTGTCGATGAGTCTTTTTCGACG
CGAACAGAAGAATTTGGTGCTGGCCCTCGATGTTTTTTTTGCCGGGACTT
CACGCGCGTGCTTAGATCCCGCGTGTTTTTTTAAGAACACAACAACATAG
ATGAGGTTGCCTGAAGACGTTTTCTTCGCCGTCCTTCGTTACTGAGGTTC
TTTTGCGTCTCCTCGTCCTCCTGGTCCTCCTCCTTCTTTCTCCCTCTACC
CCCCTTTTTATTTCCCTGTCGACCTGACTGCCTGTCTGCCTCTTATTATC
TGTCGTGCCTCTGCTGCCTCTGTCTCCGCACCCACCCCCTCAACTTGTTC
CCCCCTCCATGCACTCGGGTGCTTTCGGACCGACTAAATTCCACCACGCC
GCCACCATCATCACCATCACCATCAACATCACCGCAACAACAAGCAGGTA
TCACCCTGGTCTTGTCAGCGGTCGACTGAACCGTATCAACGACGTCGACA
CCTCCGGTCTGGAGTACTTCTGGTCTTGCTGCGGAGAGACCGACCCTTTC
CACCCGGGGTGCGTCAAGGGGAAACACGCTTCCTACGATGACCCCCCCGA
GGGAGGGGATGGAGCGTGGAGATCCCCGCTTACCGGCACCCTTCGGTAGT
GGCGTACCGCTGGTGATCACAGCGAGTTCAAACCGGCCGCGCAGCAGAAT
GATACGTAGCCGTGTGCACGATACCCTCCACGGCGGTGGATGATTTTAAC
CTTGGCCGTCGGGTACATGCTTCGATCACGTCGGCCACCGTATGATAGAA
GCGTCGGCCCGGAGCTTGATCTCTTGAGTGATTCATCACCAAACTAACGT
ACGAATAAACTACATTTTATGCTATAGCATAGTGTGTGGCCGCTTGCTTG
TCTGTTGCTCTGTTTGCCATCGGGTGGGTAGGTTGTAGGGTTGGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9452:2461..4556-

>mRNA_Ecto-sp13_S_contig9452.21064.1 ID=mRNA_Ecto-sp13_S_contig9452.21064.1|Name=mRNA_Ecto-sp13_S_contig9452.21064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=531bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9452:2461..4556- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTGGTCACGACGCAGTTCGTCGTGCCTGGTGCTGCTGGCTGCGGC
GCTCGTGGGGATTACTCCAGGATCTGAAGGCTTCCTTGGCGCACCTCGGT
TCGCTGTCGCTGCTGGTCGGTCGGGTACGGCGGGAAAAAGGGGTTGCTGC
AGAACAACGAGCGCGCGGCAAGGAGGACAAGTGATAGTCGCAGCAAACAG
CGGCGACAGTGAGGATACAGCGGCAACCGGAGGCGACGTACATGTAGTGA
GCGCCTCTACTGCCACTTCCACCTGCCGTAACTGCAAGCAACAGTTCAAC
CCAGACGACAACGTTGACGGATCTTGCTCGTATCACCCTGGTCTTGTCAG
CGGTCGACTGAACCGTATCAACGACGTCGACACCTCCGGTCTGGAGTACT
TCTGGTCTTGCTGCGGAGAGACCGACCCTTTCCACCCGGGGTGCGTCAAG
GGGAAACACGCTTCCTACGATGACCCCCCCGAGGGAGGGGATGGAGCGTG
GAGATCCCCGCTTACCGGCACCCTTCGGTAG
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