mRNA_Ecto-sp13_S_contig9410.21008.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9410.21008.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE) HSP 1 Score: 217 bits (552), Expect = 3.360e-55 Identity = 124/193 (64.25%), Postives = 135/193 (69.95%), Query Frame = 2
Query: 413 KWKVGVLDEMVLRLKVQHVVEAQRHLQKEVLDKVQGSRSQHRAYARVGSVPEIVEGDYVLMAGVRRRGFTPKILITWRGPWRVVAAERPQVYGVQNIVSGEVRNVHVARLRFDADAALEITAELKETFQHAFAQDRGYVGG-------EDGPGFDVEVEWVRFRQRRQTWEKLS*VRDAA*QFVKSDLPRLGL 970
+WKV VLDE LRLKVQHVVEAQRHL KEVLDKVQ SRS+HRA ARVGS+P+ V GDYV +VAAER VYGVQNIVSGEVR+VHVARLRF ADAALEITAELKE FQHAF Q + EDGPGFDVEVEWV F + TWE+LS + DAA QFVKS+L RLGL
Sbjct: 1543 EWKVDVLDEKSLRLKVQHVVEAQRHLHKEVLDKVQASRSKHRASARVGSLPDFVVGDYV-----------------------IVAAERLHVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAEDGPGFDVEVEWVGFDKEENTWEELSKMWDAAPQFVKSELRRLGL 1712
BLAST of mRNA_Ecto-sp13_S_contig9410.21008.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE) HSP 1 Score: 171 bits (432), Expect = 9.460e-43 Identity = 86/194 (44.33%), Postives = 122/194 (62.89%), Query Frame = 2
Query: 410 DKWKVGVLDEMVLRLKVQHVVEAQRHLQKEVLDKVQGSRSQHRAYARVGSVPEIVEGDYVLMAGVRRRGFTPKILITWRGPWRVVAAERPQVYGVQNIVSGEVRNVHVARLRFDADAALEITAELKETFQHAFAQDRGYVGG-------EDGPGFDVEVEWVRFRQRRQTWEKLS*VRDAA*QFVKSDLPRLGL 970
+ W + LD L+ +VQ+V++ Q L K++ KV +R++ RA A G +P GDYV++A VRR G TPK+ TW GPWRVV+A + VYGVQNIV+G+VR+VHVARLRF AD+ L +T++LK+ FQH+F Q + DG G+ V V W F + TW+ LS + A QF+K +L ++ L
Sbjct: 217 EAWNIDTLDATKLKQQVQNVIQTQAVLHKQIQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKMKL 410
BLAST of mRNA_Ecto-sp13_S_contig9410.21008.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 171 bits (433), Expect = 3.120e-40 Identity = 87/194 (44.85%), Postives = 122/194 (62.89%), Query Frame = 2
Query: 410 DKWKVGVLDEMVLRLKVQHVVEAQRHLQKEVLDKVQGSRSQHRAYARVGSVPEIVEGDYVLMAGVRRRGFTPKILITWRGPWRVVAAERPQVYGVQNIVSGEVRNVHVARLRFDADAALEITAELKETFQHAFAQDRGYVGG-------EDGPGFDVEVEWVRFRQRRQTWEKLS*VRDAA*QFVKSDLPRLGL 970
+ W + LD L+ +VQ+V++ Q L K+V KV +R++ RA A G +P GDYV++A VRR G TPK+ TW GPWRVV+A + VYGVQNIV+G+VR+VHVARLRF AD+ L +T++LK+ FQH+F Q + DG G+ V V W F + TW+ LS + A QF+K +L ++ L
Sbjct: 1440 EAWNIDTLDATKLKQQVQNVIQTQAVLHKQVQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKMKL 1633
BLAST of mRNA_Ecto-sp13_S_contig9410.21008.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE) HSP 1 Score: 147 bits (370), Expect = 3.730e-37 Identity = 73/152 (48.03%), Postives = 97/152 (63.82%), Query Frame = 2
Query: 536 RAYARVGSVPEIVEGDYVLMAGVRRRGFTPKILITWRGPWRVVAAERPQVYGVQNIVSGEVRNVHVARLRFDADAALEITAELKETFQHAFAQDRGYVGG-------EDGPGFDVEVEWVRFRQRRQTWEKLS*VRDAA*QFVKSDLPRLGL 970
RA A G +P GDYV++A VRR G TPK+ TW GPWRVV+A + VYGVQNIV+G+VR+VHVARLRF AD+ L +T++LK+ FQH+F Q + DG G+ V V W F + TW+ LS + A QF+K +L ++ L
Sbjct: 4 RAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIGPAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFLKQELRKMKL 155
BLAST of mRNA_Ecto-sp13_S_contig9410.21008.1 vs. uniprot
Match: A0A6H5LBX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBX7_9PHAE) HSP 1 Score: 90.1 bits (222), Expect = 2.000e-18 Identity = 43/61 (70.49%), Postives = 50/61 (81.97%), Query Frame = 2
Query: 635 ITWRGPWRVVAAERPQVYGVQNIVSGEVRNVHVARLRFDADAALEITAELKETFQHAFAQD 817
+TW GPWR+VAA RP V GVQNIV GE R+VHVARLRF ADA+LEITA K+ F+HAF Q+
Sbjct: 1 MTWTGPWRIVAAVRPHVCGVQNIVWGEDRDVHVARLRFYADASLEITAGSKDVFKHAFTQE 61
BLAST of mRNA_Ecto-sp13_S_contig9410.21008.1 vs. uniprot
Match: A0A6H5L994_9PHAE (Chromo domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L994_9PHAE) HSP 1 Score: 88.6 bits (218), Expect = 9.470e-18 Identity = 46/75 (61.33%), Postives = 51/75 (68.00%), Query Frame = 2
Query: 710 GEVRNVHVARLRFDADAALEITAELKETFQHAFAQDRGYVGG-------EDGPGFDVEVEWVRFRQRRQTWEKLS 913
GEVR+VHV RLRF ADAALEITAEL + FQHAF Q + EDGPGFDVEVEWV F + WE+LS
Sbjct: 4 GEVRDVHVKRLRFYADAALEITAELNDDFQHAFTQGAFEMAAIVDVSESEDGPGFDVEVEWVGFDKDENIWEELS 78
BLAST of mRNA_Ecto-sp13_S_contig9410.21008.1 vs. uniprot
Match: A0A6G0ML56_9STRA (Chromo domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0ML56_9STRA) HSP 1 Score: 65.9 bits (159), Expect = 6.830e-8 Identity = 43/143 (30.07%), Postives = 76/143 (53.15%), Query Frame = 2
Query: 500 VLDKVQGSRSQHRAYARVGSVPEIVEGDYVLMAGVRRRGFTPKILITWRGPWRVVAAERPQVYGVQNIVSGEVRNVHVARLRFDADAALEITAELKETFQH-----AFAQDRGYVGGEDGPGFDVEVEWVRFRQRRQTWEKLS 913
V DK R ++ R +V EGDYVL + V + K+L+TW GP+RV+ A+ + +Q++++G +VH +RL+F ADA+L++T EL+E A + + + + ++V V+W ++E L+
Sbjct: 5 VKDKRLKQRLLNKKRERGENVINFTEGDYVLRSRVDEKSGN-KLLVTWVGPYRVLRADAHS-FLIQHLITGAELDVHASRLKFYADASLDVTEELREHISSQGIVLAIEKLKEHRWNDQIRDYEVLVQWKGLEAIEDSYEPLT 145
BLAST of mRNA_Ecto-sp13_S_contig9410.21008.1 vs. uniprot
Match: A0A6A3PYH1_9STRA (Chromo domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3PYH1_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 1.020e-7 Identity = 42/143 (29.37%), Postives = 75/143 (52.45%), Query Frame = 2
Query: 500 VLDKVQGSRSQHRAYARVGSVPEIVEGDYVLMAGVRRRGFTPKILITWRGPWRVVAAERPQVYGVQNIVSGEVRNVHVARLRFDADAALEITAELKETFQH-----AFAQDRGYVGGEDGPGFDVEVEWVRFRQRRQTWEKLS 913
V DK R ++ R +V EGDYVL + V + K+L+TW G +RV+ A+ + +Q++++G +VH +RL+F ADA+L++T EL+E A + + + + ++V V+W ++E L+
Sbjct: 5 VQDKRLKQRLLNKKRERGENVINFTEGDYVLRSRVDEKSGN-KLLVTWVGSYRVLRADAHS-FLIQHLITGAELDVHASRLKFYADASLDVTEELREHISSQGIVLAIEKLKEHRWSDQIRDYEVLVQWKGLEAIEDSYEPLT 145
BLAST of mRNA_Ecto-sp13_S_contig9410.21008.1 vs. uniprot
Match: A0A6A4E2Q0_9STRA (Chromo domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4E2Q0_9STRA) HSP 1 Score: 65.1 bits (157), Expect = 1.440e-7 Identity = 43/143 (30.07%), Postives = 75/143 (52.45%), Query Frame = 2
Query: 500 VLDKVQGSRSQHRAYARVGSVPEIVEGDYVLMAGVRRRGFTPKILITWRGPWRVVAAERPQVYGVQNIVSGEVRNVHVARLRFDADAALEITAELKETFQH-----AFAQDRGYVGGEDGPGFDVEVEWVRFRQRRQTWEKLS 913
V DK R ++ R +V EGDYVL + V + K+L+TW GP+RV+ A+ + +Q++++G +VH +RL+F ADA+L++T EL+E A + + + ++V V+W ++E L+
Sbjct: 5 VKDKRLKQRLLNKKRERGENVINFTEGDYVLRSRVDEKSGN-KLLVTWVGPYRVLRADAHS-FLIQHLITGAELDVHASRLKFYADASLDVTEELREHISSQGIVLAIEKLKEHRWNHQIRDYEVLVQWKGLEAIEDSYEPLT 145
BLAST of mRNA_Ecto-sp13_S_contig9410.21008.1 vs. uniprot
Match: A0A225VF53_9STRA (Chromo domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VF53_9STRA) HSP 1 Score: 64.3 bits (155), Expect = 2.010e-7 Identity = 47/168 (27.98%), Postives = 86/168 (51.19%), Query Frame = 2
Query: 425 GVLDEMVLRLKVQHVVEAQRHLQKEVLDKVQGSRSQHRAYARVGSVPEIVEGDYVLMAGVRRRGFTPKILITWRGPWRVVAAERPQVYGVQNIVSGEVRNVHVARLRFDADAALEITAELKETFQH-----AFAQDRGYVGGEDGPGFDVEVEWVRFRQRRQTWEKLS 913
G LD + + H V + L++ +L+K + R +V EGDYVL + V + T K+L+TW GP+RVV A+ + ++++++G ++H +RL+F ADA+L++T EL E A + + + + F++ V+W ++E L+
Sbjct: 75 GFLDGLRSSIHAMHNVVDDQRLKQRLLNKKR---------ERGENVVNFTEGDYVLRSRVDEKK-THKLLVTWVGPFRVVRADAHS-FLIKHLITGAELDIHASRLKFYADASLDVTEELLEHISSQGIILAVEKLKDHRWNDAIGDFEILVQWRGLEAIEDSYEPLT 231 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9410.21008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9410.21008.1 >prot_Ecto-sp13_S_contig9410.21008.1 ID=prot_Ecto-sp13_S_contig9410.21008.1|Name=mRNA_Ecto-sp13_S_contig9410.21008.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=206bp MPEARATTYWNSFIAVVVVAVVDVVVIVGDGVSFAVADKWKVGVLDEMVLback to top mRNA from alignment at Ecto-sp13_S_contig9410:363..2652+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9410.21008.1 ID=mRNA_Ecto-sp13_S_contig9410.21008.1|Name=mRNA_Ecto-sp13_S_contig9410.21008.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2290bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9410:363..2652+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9410:363..2652+ >mRNA_Ecto-sp13_S_contig9410.21008.1 ID=mRNA_Ecto-sp13_S_contig9410.21008.1|Name=mRNA_Ecto-sp13_S_contig9410.21008.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=618bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9410:363..2652+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |