mRNA_Ecto-sp13_S_contig94031.20999.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig94031.20999.1
Unique NamemRNA_Ecto-sp13_S_contig94031.20999.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig94031.20999.1 vs. uniprot
Match: D8LH89_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH89_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 2.690e-51
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 1 
Query:    1 FFSAPAVKSGSFAPPAVRATSMVAPKMTMGIEQIADVLPLVPSEAHNAGFEMANNPLLLSVSAESFGGLIGPIGGCLAVAIFIVVMAPPRVD 276
            F +  AVKSGSFA PAVRATSMVAPKMTMG+EQIADVLPLVPSEAHNAGFEMANNPLLLSVSA+SFGGLIGPIGGCLAVAIFIVVMAPPRVD
Sbjct:   20 FIAPSAVKSGSFATPAVRATSMVAPKMTMGLEQIADVLPLVPSEAHNAGFEMANNPLLLSVSADSFGGLIGPIGGCLAVAIFIVVMAPPRVD 111
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig94031.20999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH89_ECTSI2.690e-5192.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig94031contigEcto-sp13_S_contig94031:63..341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size279
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001000.1
Cds size279
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464208.1453967-CDS-Ecto-sp13_S_contig94031:62..3411681464208.1453967-CDS-Ecto-sp13_S_contig94031:62..341Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig94031 63..341 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig94031.20999.1prot_Ecto-sp13_S_contig94031.20999.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig94031 63..341 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig94031.20999.1

>prot_Ecto-sp13_S_contig94031.20999.1 ID=prot_Ecto-sp13_S_contig94031.20999.1|Name=mRNA_Ecto-sp13_S_contig94031.20999.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=93bp
FFSAPAVKSGSFAPPAVRATSMVAPKMTMGIEQIADVLPLVPSEAHNAGF
EMANNPLLLSVSAESFGGLIGPIGGCLAVAIFIVVMAPPRVD*
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mRNA from alignment at Ecto-sp13_S_contig94031:63..341-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig94031.20999.1 ID=mRNA_Ecto-sp13_S_contig94031.20999.1|Name=mRNA_Ecto-sp13_S_contig94031.20999.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig94031:63..341- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTTTTCCGCACCCGCAGTCAAGTCCGGATCCTTCGCTCCCCCAGCCGT
GCGTGCCACCTCCATGGTGGCACCCAAGATGACGATGGGCATCGAGCAGA
TCGCGGACGTCCTCCCCCTGGTGCCGTCCGAGGCACACAACGCAGGGTTC
GAGATGGCGAACAACCCCCTGCTGCTTTCGGTTAGCGCGGAATCGTTCGG
CGGATTGATCGGCCCCATCGGCGGCTGCCTCGCCGTGGCGATCTTCATCG
TCGTCATGGCGCCCCCGCGGGTCGACTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig94031:63..341-

>mRNA_Ecto-sp13_S_contig94031.20999.1 ID=mRNA_Ecto-sp13_S_contig94031.20999.1|Name=mRNA_Ecto-sp13_S_contig94031.20999.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=279bp|location=Sequence derived from alignment at Ecto-sp13_S_contig94031:63..341- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTTTTCCGCACCCGCAGTCAAGTCCGGATCCTTCGCTCCCCCAGCCGT
GCGTGCCACCTCCATGGTGGCACCCAAGATGACGATGGGCATCGAGCAGA
TCGCGGACGTCCTCCCCCTGGTGCCGTCCGAGGCACACAACGCAGGGTTC
GAGATGGCGAACAACCCCCTGCTGCTTTCGGTTAGCGCGGAATCGTTCGG
CGGATTGATCGGCCCCATCGGCGGCTGCCTCGCCGTGGCGATCTTCATCG
TCGTCATGGCGCCCCCGCGGGTCGACTAA
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