mRNA_Ecto-sp13_S_contig9399.20996.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9399.20996.1
Unique NamemRNA_Ecto-sp13_S_contig9399.20996.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9399.20996.1 vs. uniprot
Match: D8LCP2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP2_ECTSI)

HSP 1 Score: 704 bits (1817), Expect = 2.890e-250
Identity = 377/445 (84.72%), Postives = 386/445 (86.74%), Query Frame = 1
Query:   13 SDKTSDANREIRRRKTMELMSQGGLHLKDILADPSNDSTPVEAMRSIMVRGKEHGWTTSQLFGVFLETGSTEEKIPFEHFQGGLRTLGLTIPEEDECEIFKTFDTDRSGTIELSEFIRWCLDIDTMAWKAERVRRTTVGGTSGGHGNRGDGEIGIDEAAARMAGEVAQAQLPPQQPRYPLGTLIYEGSKLFWRTGESLRIAMHENKEKHCIAISTMLEGESEPFPVLKVDSRLIRVNGKDAVLERIAEMTEADKGEIQSLPEEARAKLFDKARGSVLSDYLLARLKLIDGRDADGSVTDTQASAAAISAAARLGLGGVGPGTAPESASIVLTSETTAESVEPPGEVSLPVTKSGSIFPRGTPTPVVVKLPEDDGGESGSFLLEDELVFSGLHTFSKHVSYKDFERVENEVSEGLKDGHERIENAERAQRRAHGSLENPHHRTSAF 1347
            S+ TS   RE   RKTMELMSQGGLHLKDIL DPSNDSTPVEAMRSIMVRGKEHGWTTSQLFGVFLET                                  FDTD SGTIELSEFIRWCLDIDTMAWKAERVRRTT G TSGGHG RGDGEIGIDEAAARMAGEVAQAQLPP+QPR+PLGTLIYEGSKLFWRTGESLRIAMHENKEKHCIAISTMLEGESEPFPVLKVDSRLIRVNGKDAVLERIAEMTEADKGEIQ LPE+ARAKLFDKAR SVLSDYLLARLKLIDGRDADG+ TDTQASAAAISAAARLGLGGVGPGTAPESAS     ET AE VEPPGEVSLPVTKS SIFP GTPTPVVVKLPEDDGGESGSFLLEDELVFS LHTFSKHVSYKDF+RVENEVSEGLKDGH+RIENA++AQRRAHGSLENPHHRTSAF
Sbjct:   69 SNSTSRKVREAPARKTMELMSQGGLHLKDILGDPSNDSTPVEAMRSIMVRGKEHGWTTSQLFGVFLET----------------------------------FDTDGSGTIELSEFIRWCLDIDTMAWKAERVRRTTGGQTSGGHGKRGDGEIGIDEAAARMAGEVAQAQLPPEQPRFPLGTLIYEGSKLFWRTGESLRIAMHENKEKHCIAISTMLEGESEPFPVLKVDSRLIRVNGKDAVLERIAEMTEADKGEIQRLPEDARAKLFDKARASVLSDYLLARLKLIDGRDADGNATDTQASAAAISAAARLGLGGVGPGTAPESASTARAPETPAEPVEPPGEVSLPVTKSDSIFPIGTPTPVVVKLPEDDGGESGSFLLEDELVFSELHTFSKHVSYKDFKRVENEVSEGLKDGHDRIENADKAQRRAHGSLENPHHRTSAF 479          
BLAST of mRNA_Ecto-sp13_S_contig9399.20996.1 vs. uniprot
Match: D8LSJ9_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSJ9_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 4.860e-25
Identity = 76/266 (28.57%), Postives = 134/266 (50.38%), Query Frame = 1
Query:  109 DPSNDSTPVEAMRSIMVRGKEHGWTTSQLFGVFLETGSTEEKIPFEHFQGGLRTLGLTIPEEDECEI---FKTFDTDRSGTIELSEFIRWCLDIDTMAWKAERVRRTTVGGTSGGHGNRGDGEIGIDEAAARMAGEVAQAQLPPQQPRYPLGTLIYEGSKLFWRTGESLRIAMHENKEKHCIAISTMLEGESEPFPVLKVDSRLIRVNGKDAVLERIAEMTEADKGEIQSLPEEARAKLFDKARGSVLSDYLLARLKLIDGRDADG 897
            + + D +PVE ++ ++ + KE G +  +LF  F   G  E  +    F+  LR LG    + DE E+      FDTD +GT+EL EF+ +CL I ++ W+AE+ RR           N  + +  ++ AA ++A   +  +        P+G L+++GS+ FWR+ E++ +A+H N ++  + IST        +P + VD   I V+  +AV    A       G+ +S+ ++ R +  DKA  ++  +YL  R +   G +  G
Sbjct:  103 EAAGDVSPVEKLQVLLTKAKERGMSAERLFEHFAPGG--EASVTPLMFESALRKLGQRAFDLDEMELEHLVTVFDTDGNGTVELDEFMTFCLSIPSLPWRAEKARRL----------NNAESKDELNVAARKIARRRSSLRA------VPIGELVHQGSRFFWRSKETIDVALHLNADEGLMTISTRCPERGYNYPAIFVDVSKIPVHKTEAVARANAV------GQFESMSKDERREATDKAMTALRVEYLQHRWRKSGGYNFHG 344          
BLAST of mRNA_Ecto-sp13_S_contig9399.20996.1 vs. uniprot
Match: A0A7S2BJX7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BJX7_9STRA)

HSP 1 Score: 109 bits (273), Expect = 2.320e-22
Identity = 83/287 (28.92%), Postives = 129/287 (44.95%), Query Frame = 1
Query:  109 DPSNDSTPVEAMRSIMVRGKEHGWTTSQLFGVFLETGSTEEKIPFEHFQGGLRTLG----LTIPEEDECEIFKTFDTDRSGTIELSEFIRWCLDIDTMAWKAERVRRTTVGGTSGGHGNRGDGEIGIDEAAARMAGEVAQAQLPP-----------QQPRYPLGT----------LIYEGSKLFWRTGESLRIAMHENKEKHCIAISTMLEGESEPFPVLKVDSRLIRVNGKDAVLERIAEMTEADKGEI--------QSLPEEARAKLFDKARGSVLSDYLLARLK 870
            D  +D T ++ M ++M + KE G +  Q+F  F  +    E  P + FQ GL  LG     TI E++  EIF+  D D  GTI++ EF   C +I  +AWKAE++R       S            I++AA     E     L P           +  R+   +          +IYEG+KLFWRT E + I MHE    HCI + +      E  P + ++  +I    +D   E + E   A + E         + L ++  A++ +  R  +LS+Y+L RL+
Sbjct:   13 DFKDDDTGIKKMWTVMTKAKESGMSVDQIFTFFKSSSGGSEIGPLD-FQEGLAALGPAITKTITEDELSEIFQDLDDDGGGTIDVDEFKAHCYNIPRLAWKAEKIRFEREKTKS------------IEDAAKMAEREATNLPLTPSGSTGAIMHALEDHRHQKDSAAAANMQSKEVIYEGTKLFWRTHEKIDIVMHEYSALHCIVMCSYNATTDEAHPNIIINKTMIEDTIED---EAVQEQLSAQRQEYCLRKQIVGRKLTDDEEAEVEESVRRGILSNYILLRLQ 283          
BLAST of mRNA_Ecto-sp13_S_contig9399.20996.1 vs. uniprot
Match: D7G5R3_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5R3_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 1.370e-21
Identity = 69/221 (31.22%), Postives = 110/221 (49.77%), Query Frame = 1
Query:  250 FQGGLRTLGLTIPEEDECEIFKTFDTDRSGTIELSEFIRWCLDIDTMAWKAERVRRTTVGGTSGGHGNRGDGEIGIDEAAARMAGEVAQA----------QLPPQQPRYPLGTLIYEGSKLFWRTGESLRIAMHENKEKHCIAISTMLEGESEPFPVLKVDSRLIRVNGKDAVLERIAEMTEADKGEIQSLPEEARAKLFDKARGSVLSDYLLARLKLIDG 882
            FQ GL TLG  I  E+  ++F   D +  G+I+L+EF R+CL+I +M WKAER RR  +G  +G      DG+  +++AA  MA E   A          +L   +P   LG + Y G K FWRT + + + +  N+ K  +AI      E+E    LK      +              ++A+K +     +E +A L +KA  + ++DY++ R+ + DG
Sbjct:  302 FQHGLATLGFNISTEETAKMFDQLDANGDGSIDLAEFTRFCLEIPSMTWKAERARRGILGNNAGE-----DGDRELEKAARDMANETVSANDAAEGGLGGELAKLEPLVHLGKIFYRGEKFFWRTKDLIEVVVQLNEAKGFLAIPASAAAEAEILNDLKAKRLAAKTEHAMGGSGSRGGESDANKEQAGDQQQEDQA-LSEKAHMAYIADYIVHRITMPDG 516          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9399.20996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LCP2_ECTSI2.890e-25084.72EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D8LSJ9_ECTSI4.860e-2528.57EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2BJX7_9STRA2.320e-2228.92Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
D7G5R3_ECTSI1.370e-2131.22EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9399contigEcto-sp13_S_contig9399:1..5683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score708.8
Seed ortholog evalue1.7e-201
Seed eggNOG ortholog2880.D8LCP2
Model size1347
Hectar predicted targeting categoryother localisation
Exons10
EggNOG OGs2E61A@1,2SCSX@2759
Cds size1347
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9399.20996.1prot_Ecto-sp13_S_contig9399.20996.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9399 1..5683 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464207.5752199-CDS-Ecto-sp13_S_contig9399:0..531681464207.5752199-CDS-Ecto-sp13_S_contig9399:0..53Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9399 1..53 +
1681464207.588637-CDS-Ecto-sp13_S_contig9399:830..9901681464207.588637-CDS-Ecto-sp13_S_contig9399:830..990Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9399 831..990 +
1681464207.606331-CDS-Ecto-sp13_S_contig9399:1461..15631681464207.606331-CDS-Ecto-sp13_S_contig9399:1461..1563Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9399 1462..1563 +
1681464207.6199472-CDS-Ecto-sp13_S_contig9399:2031..21481681464207.6199472-CDS-Ecto-sp13_S_contig9399:2031..2148Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9399 2032..2148 +
1681464207.6341548-CDS-Ecto-sp13_S_contig9399:2532..26161681464207.6341548-CDS-Ecto-sp13_S_contig9399:2532..2616Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9399 2533..2616 +
1681464207.6567657-CDS-Ecto-sp13_S_contig9399:3243..33511681464207.6567657-CDS-Ecto-sp13_S_contig9399:3243..3351Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9399 3244..3351 +
1681464207.6708252-CDS-Ecto-sp13_S_contig9399:3698..38391681464207.6708252-CDS-Ecto-sp13_S_contig9399:3698..3839Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9399 3699..3839 +
1681464207.686912-CDS-Ecto-sp13_S_contig9399:4302..44181681464207.686912-CDS-Ecto-sp13_S_contig9399:4302..4418Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9399 4303..4418 +
1681464207.7014625-CDS-Ecto-sp13_S_contig9399:4723..50451681464207.7014625-CDS-Ecto-sp13_S_contig9399:4723..5045Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9399 4724..5045 +
1681464207.7142804-CDS-Ecto-sp13_S_contig9399:5539..56831681464207.7142804-CDS-Ecto-sp13_S_contig9399:5539..5683Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9399 5540..5683 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9399.20996.1

>prot_Ecto-sp13_S_contig9399.20996.1 ID=prot_Ecto-sp13_S_contig9399.20996.1|Name=mRNA_Ecto-sp13_S_contig9399.20996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=449bp
ETERSDKTSDANREIRRRKTMELMSQGGLHLKDILADPSNDSTPVEAMRS
IMVRGKEHGWTTSQLFGVFLETGSTEEKIPFEHFQGGLRTLGLTIPEEDE
CEIFKTFDTDRSGTIELSEFIRWCLDIDTMAWKAERVRRTTVGGTSGGHG
NRGDGEIGIDEAAARMAGEVAQAQLPPQQPRYPLGTLIYEGSKLFWRTGE
SLRIAMHENKEKHCIAISTMLEGESEPFPVLKVDSRLIRVNGKDAVLERI
AEMTEADKGEIQSLPEEARAKLFDKARGSVLSDYLLARLKLIDGRDADGS
VTDTQASAAAISAAARLGLGGVGPGTAPESASIVLTSETTAESVEPPGEV
SLPVTKSGSIFPRGTPTPVVVKLPEDDGGESGSFLLEDELVFSGLHTFSK
HVSYKDFERVENEVSEGLKDGHERIENAERAQRRAHGSLENPHHRTSAF
back to top

mRNA from alignment at Ecto-sp13_S_contig9399:1..5683+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9399.20996.1 ID=mRNA_Ecto-sp13_S_contig9399.20996.1|Name=mRNA_Ecto-sp13_S_contig9399.20996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5683bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9399:1..5683+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGACGGAACGATCAGACAAAACCAGCGATGCCAACCGCGAGATTAGGAG AAGGTGCTTTTTGTCCCTCATAGTACTGACCCTCAAGGTCGTGTGTTTGT CAGGTGATGTGTTCTTGCTCCACGAGCTGCTCGTGCCTTTCCATCGTTTG CTGTTTTCACGAGAGACAACAGTCATTGCCGACCTTTGAATGAAGATGCC ATAGGTCCGGAAAGTTTGTTGGCACAAAATCGATCATCGCTTGTGATAGT CCTCGACGATGAAGAGGCGTAGTGTAACTACATCCATCGCGCTTAAACTG CCTTCAAGCATGTCGCGAATACTGCACTACGGAGCATACTTTTAGAGCAG GCACGCAGTCACGATTTGTAAACTACTCGAACGTCTTGTTATAACAATTG AAGATATAGCCACGGTGGTTTAGCATCGCACCTTTGTCCATTTTTTACGC ACATTGTACAGTCGATACACAAGCCGCCTAGCTACACGCCGCTCTTGGAC ATTGCACTTTCAGCGATGTTTCCCAGCCACCTACAACGCGTGACTTCAGC AGCGTTCCTTGAGCAGAATCAGGACATGTCGATTCCGTGTGGTCGGGGCC TTAGTCAATCTACCCCTCCTCCCCTCCGTCCTAGGTTTGTGTGCAGAAGC GGTTTACGACGTAGCTTGGCACTCAAGAACGATGAGGTTAGAGGCAAAAA CCGCACCACTCCAACGCTCCCATCGTCAGCAGTAGGTGGAACAAAAACCA ATGGAGTCAAGAGACAGCACAGCAGCGGCAACACTGTGCCTCAGCCCCAC GTCACCCCCCTGTCTCGCTGCTCGATAAAGAAAAACGATGGAGCTCATGA GCCAAGGCGGGCTGCACCTCAAGGATATCCTCGCGGACCCGAGCAACGAC AGCACTCCGGTGGAGGCGATGAGGTCCATCATGGTCCGCGGGAAGGAACA CGGCTGGACAACGTCTCAGCTCTTCGGCGTCTTTCTCGAGGTGAACAAAA GGAAGGAATGTGCTTGTGGATTGTCGTGGCGGATTTCAAGCGCAGAGTAC AGTTCTGTACGGAGACGGCAACACTCAACTGTATTGACGTGTACCGGTTG TGGTCAACTCCTCCTCCAAAGTCGTTCCGCCCGCACAAGGGCTTAGCTAG ACATTTTGACTTGTATCTTGAAACACAAAACACCCGTAGAATGTAGACTA GACCATATACCTAATGTCTTCCCACGTCGTTTGATCGCATGGCGCTTATT ATACGATTTCGTGCCCACCTTTGTTTAGCGCTTATGGAACAATTTCGTGC TCCCTGCTCTCGGCAAAATGTTGGCGTTTCAGAAACGAGCCTAATCACTC CCAGCCGCGACGCCTCCCCCTCACCTGAAACTCCCAACGATCCGCACTCA AATGCCTCGTCGGGAACACCACAATCACGACGACGACGACGACGGATAAC GATGACGAAAGACTGGTAGCACGGAAGAGAAGATTCCGTTCGAGCACTTT CAGGGGGGGCTTCGCACACTGGGGCTAACCATCCCCGAGGAAGACGAGTG TGAAATATTCAAGGTGAAGTCTTGTGGGCTACGTCATGGCAGAGCGCAGG TTACGGGGAGGGGGGGGGGGAGGGAACGGGAGGGGGGGGAGGGGGGTCGC GTGCTTTCCGGTTTTTCATGCGGGGGAGAATCGCGGGCTTTCTTCTAGTG GGGAATTGATGATACAGCCGAGGGACCCCATGTGAGCAGGGCTCCACGCA CGCAGCTGCTCGACTCAAGAAGATTTGGCTCAATCGTGGCAAGCGAACTT TCGACCCCGCTCCCACGCACCGTTCGTTGGGTCCACGAAACCCGCTTCTC GTCCACACAACCTTGTGCATCTGCCGCTTTTTCACCTTAGGTATGCCTGG TAACTCTGTTTGACGCTCCGCCACCGCAGGTAAGCCTGATCTCTCCGTGC TGCTCCAAACAATGCATTGCTGATCAGGCTGCTTGTAAGCCCCTGCTCCC GCTTTTGCTCGTTGCCTCTCTGCCACGAAAGACGTTCGATACGGATCGCA GCGGTACGATAGAGCTGAGCGAGTTCATCCGCTGGTGCCTCGACATCGAC ACGATGGCCTGGAAGGCCGAACGTGTGCGAAGGACAACGGTAGGCGGTGT CTCTGAGCTTGATTGTTGTTGTTGTTGTTGTTGTTGCTGTTGTTGTTGTG GTCGTCGTCGTCGTTGTATTTGTAGATGTTGTTGTTGCTGATGTTCTTGT TCTTGTCGATGCAATCCCATCAAGCCACTCAAAGTTGTCTTCCGCACACC GGCAAGCGCACCCTTTGCCGGAGTCGGCAGCTGCAGCGCGTTTCGGCACG CAGCCCATCCTTCAACACGTGAGATGCCACGCAGGAATGAAGGTAGCGAT GCCACGAAAATATGAAGGTAGCCCTTAAAACCCGCGATTTCCCTGCGATT CGAAGAGGCGTCAGTTCTACGGCTTCGGTACTCCCTTTACCCCCCATTCC CTCCTCGCTCCACCGCTAACTCGGGGGGACAGACCAGTGGTGGACACGGA AATCGTGGAGACGGGGAAATCGGTATCGACGAGGCGGCCGCTAGGATGGC CGGTGAAGTAGCGCAGGTGGGTGGATGGGTGGCAACGGAGTTCCAACGAT CCTGGTGGGGGTGTCCGTGTAGGCACCTTGTTGCTTCGGCCGCACCTACA TATCCTGTCTCTGTCTCCGGAGCAGCCCCGCTCCCATCTCCCCCCTTCTA ACCACCGTGTCCTAGTTTTCCAACTGGTAACGTCGCCGCCGTCGTGACGC CCAACCAAATCAGGTGCGCGTTCGATATTGTCATGCACTCGCCTGCCGTG TGCAACTACACATGTTCAATACCCCTTGCAGTGCGATGCTTCGTGTTGAG ATCGCGGAGTGCTCTCGCAGTCACCCCGCACAAAAACGGGGATTCAAAGG CCTTCGTCTTTATGATACCACCCGCACTCACCCGTAGTTGTAGAGCAAGG CCCACCCAAGACACGACGGTCAAGTTTTCGACCTTACAAGCATGAATCAG ACTGCTGAGGTTGTCTAGGAGTGTGCCGCACATATTTCCAATCCTCGCAT AGCTGCAGTTGTGGAACCGATCCAGTCCGTGGTATTGTCGTTTTTCACGT CCACCAGTGGGGGGTGGGGGGGGGGGAGGATCTCACGTGCTTTCCTTGGA CCGTTTGGGCCATGCCTCCGATTTCGCACCTGTTGCCCCTCAGGCACAGC TTCCTCCGCAACAGCCCCGGTACCCCCTGGGAACCCTAATCTACGAGGGC TCCAAGCTATTCTGGAGGACCGGGGAGAGTTTACGAATTGCCATGCACGA GGTGTGAGATTTACTCGCTACCATCTATTTCTCTCGACATCGCTGTACTT TTTGTCGCAGGCGTGTACATGGTGTACATCGCGGAGACAACAAACACCAC AAGTGCAGGTCGGCCCCGTGAAATCGAGACCAAGAGTTGCGAACACGACC GGAATCATCGAGACCATGTCCTTTCAAACTGGTTTTCAGCGGGGTAATGC GATGTCTATTCCACGGGGTGCCAACCGCAAGAAACCCTCCAACCCACGAT ACTGATCTTTGTATTTTGGAATACGCGCTTATTCGATTAGAGTTACACCC ACCAACGTTGCCCTGCTGGCCTCGGCTTTCCAACGTTCTGCGCGTCAGAA CAAGGAGAAGCATTGCATAGCGATCTCCACGATGCTTGAGGGGGAGTCAG AACCCTTCCCGGTGTTGAAGGTGGACTCCAGGCTGATTCGGGTCAATGGA AAGGATGCGGTGCTCGAGAGGATTGCTGAGATGACAGAAGTGAGTATTTG CAGTTGTTCCTTTGGTTGTACGATGTCTTTGTAGGTTCCCGTCGTGAGAT TCGGATGTGGTGCACGCTTGACCTCACGGGACAGGAACCAACGCCGCACA AATGGGCTTCTTTAGCCCGCTGAACTGTCTATCCCATTCATAGCCCCCGA AACAGAGTGCGAAGGAGAAACGATGCATTGCTCATCGTCTCACCACGTAG ACTTTGCATAGAACTCGCTTTTCGTTTCAAGACATCGACCACGGTTTTTG TTGTACAAACTTTTCGTCAGCTCATTTCCGTGTCCGTAGGTACAATGAAG GTGAACACTGAAACAATCCCCAACACTTTTCGACTTTGAGTTTGGTAAGA TGCAATCCCTCCCGTCACAGTGGGAGTGGCCAGAAAAAATACGTGGTTCA TTGAAATTATAGAAAAACTCCCTGTCACCATCCTTTCCTTCGACGATGGG AGGCGGACAAAGGTGAAATTCAAAGTTTGCCCGAGGAAGCCAGGGCGAAG CTTTTCGACAAGGCCAGGGGTTCCGTTCTCTCGGACTACCTGCTGGCCAG GCTCAAGTTGATCGATGGGTGAGGTGAATGTCTTGGTTGGATGTGTGCCA GGTTTCTCAATAACGGGTGACCCGGTACGACTAAGGAGACACACAATCTT CGGATAATACCAACTCAGAGGTGATGTAGTTGCCGTTCCCCTTGCTCCTA AACCGAACTGGACTGTGGGGATATTGACGCGGAAAAGCTTGCTGGGTGTT GGTCAAGGCCGTACGGCCCCTCCCTGTTGCACAGGATTATTCCGTCACCT GTGTCGTTTGCCCCTTCCCGCCCTACCCACCGGCGCTTCCCTCCCACGTC GAACTCCCCCGGGACAAGAAAAGACGCGACGCCGACGGGAGCGTCACAGA CACACAGGCCTCCGCGGCGGCGATATCCGCCGCAGCGCGCCTGGGTTTAG GTGGAGTGGGGCCAGGTACGGCTCCGGAATCCGCATCAATAGTGCTGACT TCGGAGACGACAGCGGAGTCTGTTGAACCACCCGGGGAGGTATCGCTACC TGTCACCAAGTCGGGCTCGATTTTCCCCAGAGGAACGCCGACGCCAGTGG TGGTCAAGCTACCTGAGGACGATGGCGGGGAATCGGGGTCGTTCCTGCTG GAGGATGAACTGGTTTTCTCCGGACTGCACACTTTCTCCAAGCATGTGAG TTGGCGTCCTCTTTTGCTCCTTGGCACTAGTCTATTTGAGCTGCGTATGT GGATAGCATTGACGTTTATAGAGCTATGGGTCCTCTCGAGGAGCCGTTAT TTCGAGGGTAATGCGTACCGGGCCATTCGGACGAGAGAAACAAAGCAGGG CGTCTGGGTGGCACGAAGCCTTCTTCTGTTGTAGCCTTTTATCGCAGGTT GAGCGGCCTTGGCGGATGTCTGGGTTCGTACAGAAGGTTTGGCACGCGCA AGCTATCAAGAATCATACGCTCGACAATTTCCTCGGTCATGCAACGCCAG CTTGAAATGTTGCTTCTAAGGGCATCAGTTCCGGCAGAGCACATGGTGTG GAACACCGCCCTCGAACTTTGCGTACGCCCAACCGTATAGTCTAGACAAT TCATTGTGCATTTCAGTTTCACCATTTTCCAACGAAACGTCTCCTCCTCT CCACTGTTTCGGATGCCCTCTGGTGACTGTTTTTTTCAGGTCTCCTACAA GGATTTCGAGCGTGTCGAGAACGAGGTATCCGAAGGGCTCAAAGATGGGC ACGAGAGGATTGAGAACGCCGAGAGAGCACAACGAAGAGCGCATGGCTCT CTGGAGAATCCCCATCACAGAACGTCGGCCTTT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9399:1..5683+

>mRNA_Ecto-sp13_S_contig9399.20996.1 ID=mRNA_Ecto-sp13_S_contig9399.20996.1|Name=mRNA_Ecto-sp13_S_contig9399.20996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1347bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9399:1..5683+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGACGGAACGATCAGACAAAACCAGCGATGCCAACCGCGAGATTAGGAG
AAGAAAAACGATGGAGCTCATGAGCCAAGGCGGGCTGCACCTCAAGGATA
TCCTCGCGGACCCGAGCAACGACAGCACTCCGGTGGAGGCGATGAGGTCC
ATCATGGTCCGCGGGAAGGAACACGGCTGGACAACGTCTCAGCTCTTCGG
CGTCTTTCTCGAGACTGGTAGCACGGAAGAGAAGATTCCGTTCGAGCACT
TTCAGGGGGGGCTTCGCACACTGGGGCTAACCATCCCCGAGGAAGACGAG
TGTGAAATATTCAAGACGTTCGATACGGATCGCAGCGGTACGATAGAGCT
GAGCGAGTTCATCCGCTGGTGCCTCGACATCGACACGATGGCCTGGAAGG
CCGAACGTGTGCGAAGGACAACGGTAGGCGGTACCAGTGGTGGACACGGA
AATCGTGGAGACGGGGAAATCGGTATCGACGAGGCGGCCGCTAGGATGGC
CGGTGAAGTAGCGCAGGCACAGCTTCCTCCGCAACAGCCCCGGTACCCCC
TGGGAACCCTAATCTACGAGGGCTCCAAGCTATTCTGGAGGACCGGGGAG
AGTTTACGAATTGCCATGCACGAGAACAAGGAGAAGCATTGCATAGCGAT
CTCCACGATGCTTGAGGGGGAGTCAGAACCCTTCCCGGTGTTGAAGGTGG
ACTCCAGGCTGATTCGGGTCAATGGAAAGGATGCGGTGCTCGAGAGGATT
GCTGAGATGACAGAAGCGGACAAAGGTGAAATTCAAAGTTTGCCCGAGGA
AGCCAGGGCGAAGCTTTTCGACAAGGCCAGGGGTTCCGTTCTCTCGGACT
ACCTGCTGGCCAGGCTCAAGTTGATCGATGGACGCGACGCCGACGGGAGC
GTCACAGACACACAGGCCTCCGCGGCGGCGATATCCGCCGCAGCGCGCCT
GGGTTTAGGTGGAGTGGGGCCAGGTACGGCTCCGGAATCCGCATCAATAG
TGCTGACTTCGGAGACGACAGCGGAGTCTGTTGAACCACCCGGGGAGGTA
TCGCTACCTGTCACCAAGTCGGGCTCGATTTTCCCCAGAGGAACGCCGAC
GCCAGTGGTGGTCAAGCTACCTGAGGACGATGGCGGGGAATCGGGGTCGT
TCCTGCTGGAGGATGAACTGGTTTTCTCCGGACTGCACACTTTCTCCAAG
CATGTCTCCTACAAGGATTTCGAGCGTGTCGAGAACGAGGTATCCGAAGG
GCTCAAAGATGGGCACGAGAGGATTGAGAACGCCGAGAGAGCACAACGAA
GAGCGCATGGCTCTCTGGAGAATCCCCATCACAGAACGTCGGCCTTT
back to top