mRNA_Ecto-sp13_S_contig9397.20995.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9397.20995.1
Unique NamemRNA_Ecto-sp13_S_contig9397.20995.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9397.20995.1 vs. uniprot
Match: A0A6H5K9M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M1_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 7.680e-47
Identity = 133/161 (82.61%), Postives = 140/161 (86.96%), Query Frame = 1 
Query:    1 AQLPSGEVDASLDVKKPRKGLLGAVGGLFKTSKAKIEVPDADVDXXXXXXXXXXXXXXAELPKVDGVSADLPAVEGGLKAPDLPNASGDVSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAEAPSVDLAGKVPSAEGGVGGELPSGDVSVT 483
            A+LPSGEVDASLDVKKP+KGLLGAVGGLFKTSKAKIEVPDADVD              A+LP VD VSADLPAVEGGLKAPD+PN SGDVSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  GSAEAPSVDLAGK+PS +GGV G+LPSGDVSVT
Sbjct:  859 AELPSGEVDASLDVKKPKKGLLGAVGGLFKTSKAKIEVPDADVDVSAPSLDVNVPSGGAKLPGVDDVSADLPAVEGGLKAPDMPNVSGDVSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPLGSAEAPSVDLAGKMPSVQGGVAGKLPSGDVSVT 1019
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BLAST of mRNA_Ecto-sp13_S_contig9397.20995.1 vs. uniprot
Match: D8LB94_ECTSI (Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB94_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 5.050e-8
Identity = 61/103 (59.22%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:  175 AELPKVDGVSADLPAVEGGLKAPDLPNASGDVSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSAEAPSVDLAGKVPSAEGGVGGELPSGDVSVT 483
            AELP V GVSADLP  EGGLK PD+P+       XXXXXXXXXXXXXXXXXX                        SVDLAGK+ S EGGVGGELPSGDVS+T
Sbjct:  999 AELPGVGGVSADLPTAEGGLKGPDMPDXXXXXXXXXXXXXXXXXXXXXXXXX------------------------SVDLAGKMHSVEGGVGGELPSGDVSMT 1077
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9397.20995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K9M1_9PHAE7.680e-4782.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB94_ECTSI5.050e-859.22Similar to AHNAK nucleoprotein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9397contigEcto-sp13_S_contig9397:2024..4017 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score63.5
Seed ortholog evalue1e-07
Seed eggNOG ortholog2880.D8LB94
Model size485
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.axon ensheathment
EggNOG OGs28M73@1,2QTQ3@2759
Cds size483
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464207.4919677-CDS-Ecto-sp13_S_contig9397:2025..23391681464207.4919677-CDS-Ecto-sp13_S_contig9397:2025..2339Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9397 2026..2339 -
1681464207.517192-CDS-Ecto-sp13_S_contig9397:3555..36131681464207.517192-CDS-Ecto-sp13_S_contig9397:3555..3613Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9397 3556..3613 -
1681464207.5323858-CDS-Ecto-sp13_S_contig9397:3906..40171681464207.5323858-CDS-Ecto-sp13_S_contig9397:3906..4017Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9397 3907..4017 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9397.20995.1prot_Ecto-sp13_S_contig9397.20995.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9397 2026..4017 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9397.20995.1

>prot_Ecto-sp13_S_contig9397.20995.1 ID=prot_Ecto-sp13_S_contig9397.20995.1|Name=mRNA_Ecto-sp13_S_contig9397.20995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
AQLPSGEVDASLDVKKPRKGLLGAVGGLFKTSKAKIEVPDADVDVSAPSL
DVNVPSGEAELPKVDGVSADLPAVEGGLKAPDLPNASGDVSVPGVSADVS
VPDVSGSLKVPDVSGDVSLPSVDMDVPLGSAEAPSVDLAGKVPSAEGGVG
GELPSGDVSVT
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mRNA from alignment at Ecto-sp13_S_contig9397:2024..4017-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9397.20995.1 ID=mRNA_Ecto-sp13_S_contig9397.20995.1|Name=mRNA_Ecto-sp13_S_contig9397.20995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1994bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9397:2024..4017- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCAACTGCCCTCGGGAGAGGTAGACGCCTCGCTTGACGTGAAGAAGCC
CAGGAAGGGTCTGCTGGGCGCAGTCGGCGGTCTGTTCAAGACCAGCAAGG
CGAAGATCGAGGTAAGATATTACGACCAGTCTCTACTTGGTAACTGAGGT
TTTCCTAAACACTCTTTTATTCTTTTTTTTTTTCATGTGTGAGTTTACGC
CTGGTGGTCTATTTCCAGGCCAGCAACTCAGAGTAGGAACTTTGAACTAA
TATCCATTTGGTATCTACGGTATCGGAAGACATTTTTTTTGTTGTGCGGC
CTGCGCGCGCAGTCGAGTCGCCATCGGATTCTTGGCTAGATGACCCTACA
AAACACTGCCCTCGCGTGCGCAACCGCTTACATGCCACCACGATCATGAC
GCAGGTGCCGGATGCCGATGTTGACGTCTCTGCGCCAAGCCTCGACGTCA
ACGTCCCCAGCGGTAAGATGCGAAGAATTTGATGTTGTTGTTGTTGTTGT
TGTTTTTGTTGGGACTCACCGACGTCTACAAGCACTGGGACGTCCACAAA
AACAAAAACAAATTATCTCTTCGTGAGAAACTTGTCTCTTGAGGCGAAAG
AACAATACTATCATGATTCAGAAGTCTAACCCAAATGGTTAATCAAAGAC
GTCATGGAACCACTAGTGTACGTTCCGGCACTGGCGACAAATTCCCCTCG
GAAGCCATTATTTGCTGCGGTGATTGAGGGCGACATGGGAAACGCTGGTT
TGCAGGAGAAGTCACATCCTCTTAAAAAAAAAATTCACCAGGGGGTAGCC
GGACGCACTTAGGGCGAACTGACACAGCTCGATTGCTCCAGGGGAGAAAC
CGTTCCGGTGCCGAAAGGGCGACGTTGACATTTGGTCGTCAAGAGTTTCC
GAACACGAATCGTTCGGCATTTGTCACCCCTTCGAAGGCGGAGCATCCGA
GCTTTCAACTCGTGCCGATACCAATGTGTCAAATGCACTTCGTATTGAAG
TCAGAGGCAGTACACACGGTCTGATACACGTACTGTAGCCGAATGCACTA
TTGTGTATACGTTCATTCTCCGATGCCAATGCTCGTCCTAATGTATGTAC
GACGAACATAATAAATACCGGTGGATTTCTGTTGATAGGAGTAAGAAGTG
TGTGCAGCGGTAAATTGTGATGACGAGATACCCCGGCGCACCGGATCGAC
GTGTTGCGAGAGAGCGAGACTCAAGGTCTCGCGAGTGTGTGCTGATTCCA
TTTCCACTTCACGCACCGAAAAAAATATGGATCCTACCGTGTAGATGCTT
GCACCGCCGCATCTGCAGTTTTGGCGCTGTGCGGGAACTTTTTCTTCCCG
TTTTTCGACAAGAAAAATCAACCACGGTCAAGGCAGTGCTGATCACACTT
TGCTCCCCTTGAGCGCTGAGTTCGTTTGACAATGGCATTCAGCTTTTGCG
CATACCCGAAACGCCCACAGAAGGAACCAATTCTTGAGGCCGCTTCGGTA
AATTGGAGGCGTGTGTGCGGCGAGTTGAGCAACCCTATCGATGTGCAATG
GGGTTCAGTATTGATGTGCACGCTATGTGCACCTCGAATGATCGAGTGTT
GTTTTGGGTGATGTGAATATACTGTGCGTGTTCCAAAGAGTATTCATCGC
CTTAACTTCTCGCTCGCGTTGACCACAGGAGAAGCCGAACTCCCTAAAGT
GGACGGCGTCTCCGCTGACCTTCCCGCCGTTGAAGGTGGCCTCAAGGCTC
CTGACTTGCCGAACGCGAGCGGCGACGTGTCCGTGCCGGGTGTGTCTGCC
GATGTGTCCGTACCGGACGTTTCTGGCTCTCTGAAGGTTCCCGATGTGAG
CGGAGACGTGTCCTTGCCTTCGGTGGACATGGACGTGCCGCTTGGCTCCG
CCGAAGCGCCTTCGGTGGACCTGGCCGGCAAGGTGCCCTCTGCGGAAGGA
GGCGTCGGTGGTGAGCTTCCCTCCGGCGATGTGAGCGTGACGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9397:2024..4017-

>mRNA_Ecto-sp13_S_contig9397.20995.1 ID=mRNA_Ecto-sp13_S_contig9397.20995.1|Name=mRNA_Ecto-sp13_S_contig9397.20995.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9397:2024..4017- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGCAACTGCCCTCGGGAGAGGTAGACGCCTCGCTTGACGTGAAGAAGCC
CAGGAAGGGTCTGCTGGGCGCAGTCGGCGGTCTGTTCAAGACCAGCAAGG
CGAAGATCGAGGTGCCGGATGCCGATGTTGACGTCTCTGCGCCAAGCCTC
GACGTCAACGTCCCCAGCGGAGAAGCCGAACTCCCTAAAGTGGACGGCGT
CTCCGCTGACCTTCCCGCCGTTGAAGGTGGCCTCAAGGCTCCTGACTTGC
CGAACGCGAGCGGCGACGTGTCCGTGCCGGGTGTGTCTGCCGATGTGTCC
GTACCGGACGTTTCTGGCTCTCTGAAGGTTCCCGATGTGAGCGGAGACGT
GTCCTTGCCTTCGGTGGACATGGACGTGCCGCTTGGCTCCGCCGAAGCGC
CTTCGGTGGACCTGGCCGGCAAGGTGCCCTCTGCGGAAGGAGGCGTCGGT
GGTGAGCTTCCCTCCGGCGATGTGAGCGTGACG
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