mRNA_Ecto-sp13_S_contig9393.20990.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9393.20990.1
Unique NamemRNA_Ecto-sp13_S_contig9393.20990.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9393.20990.1 vs. uniprot
Match: D8LKR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR8_ECTSI)

HSP 1 Score: 106 bits (265), Expect = 8.830e-29
Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 3 
Query:   33 MARDKSAWIHTDIQARGLRGRWEASRGYDGGWASSTVPSRPGLARQGSVAVVGQ 194
            MA DKSAWIH+ IQARGLRGRWEASRGYDGGWASST PSRPGLARQGSVAVVGQ
Sbjct:    1 MAPDKSAWIHSVIQARGLRGRWEASRGYDGGWASSTAPSRPGLARQGSVAVVGQ 54
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BLAST of mRNA_Ecto-sp13_S_contig9393.20990.1 vs. uniprot
Match: D8LG34_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG34_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 8.760e-10
Identity = 26/31 (83.87%), Postives = 27/31 (87.10%), Query Frame = 3 
Query:   33 MARDKSAWIHTDIQARGLRGRWEASRGYDGG 125
            MA DK AWIH+ IQARGLRGRWEA RGYDGG
Sbjct:    1 MAPDKFAWIHSVIQARGLRGRWEACRGYDGG 31
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9393.20990.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKR8_ECTSI8.830e-2992.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LG34_ECTSI8.760e-1083.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9393contigEcto-sp13_S_contig9393:2053..2614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size264
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size165
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464207.05603-UTR-Ecto-sp13_S_contig9393:2052..20841681464207.05603-UTR-Ecto-sp13_S_contig9393:2052..2084Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9393 2053..2084 +
1681464207.0863936-UTR-Ecto-sp13_S_contig9393:2547..26141681464207.0863936-UTR-Ecto-sp13_S_contig9393:2547..2614Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9393 2548..2614 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464207.0663729-CDS-Ecto-sp13_S_contig9393:2084..21261681464207.0663729-CDS-Ecto-sp13_S_contig9393:2084..2126Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9393 2085..2126 +
1681464207.0764196-CDS-Ecto-sp13_S_contig9393:2424..25471681464207.0764196-CDS-Ecto-sp13_S_contig9393:2424..2547Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9393 2425..2547 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9393.20990.1prot_Ecto-sp13_S_contig9393.20990.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9393 2085..2547 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9393.20990.1

>prot_Ecto-sp13_S_contig9393.20990.1 ID=prot_Ecto-sp13_S_contig9393.20990.1|Name=mRNA_Ecto-sp13_S_contig9393.20990.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=55bp
MARDKSAWIHTDIQARGLRGRWEASRGYDGGWASSTVPSRPGLARQGSVA
VVGQ*
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mRNA from alignment at Ecto-sp13_S_contig9393:2053..2614+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9393.20990.1 ID=mRNA_Ecto-sp13_S_contig9393.20990.1|Name=mRNA_Ecto-sp13_S_contig9393.20990.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=562bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9393:2053..2614+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCGTCCTCCTTCACGACACACCCCCGGCTCCATGGCTCGTGACAAGTCC
GCTTGGATACATACCGATATCCAGGTTGGTTGTGGGTTCTGTCTCTTGTC
GAAGTTGCGTTTTGGCGTGATGTGGCCTTTACTCCGTTTTTTGTTAGGGA
CCAGTCGATCTTTGAGCATGGAACGAGGAGGCATGTGAGACCACCAGATG
TCGAGGTAACCGCGCGTTTTTCTAGTTCCTTTCCATTCGTGGCGTGATTG
CCTGTACTCCAGTACCCCCGCGCGACTCGTACGCCGGTCGATGTTTTCAC
CTCCAGTAACGCCCCGCGTACCTTTCTTGATCAACGATTTGCTCTCCTCT
TGCTGCCACCGGTGGCTTGCAGGCAAGGGGCCTACGGGGGCGGTGGGAGG
CGAGTCGAGGATATGATGGTGGATGGGCATCTTCGACAGTTCCCTCGCGC
CCGGGTCTTGCAAGGCAGGGGTCGGTGGCGGTGGTAGGGCAGTAGAGAGG
GCAGAGGGAGAGTCTCTACTGCTGCCGCTGTCAACAGGCGTGTTAGAGGT
GGACGAGGCCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9393:2053..2614+

>mRNA_Ecto-sp13_S_contig9393.20990.1 ID=mRNA_Ecto-sp13_S_contig9393.20990.1|Name=mRNA_Ecto-sp13_S_contig9393.20990.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=165bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9393:2053..2614+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCGTGACAAGTCCGCTTGGATACATACCGATATCCAGGCAAGGGG
CCTACGGGGGCGGTGGGAGGCGAGTCGAGGATATGATGGTGGATGGGCAT
CTTCGACAGTTCCCTCGCGCCCGGGTCTTGCAAGGCAGGGGTCGGTGGCG
GTGGTAGGGCAGTAG
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