mRNA_Ecto-sp13_S_contig9391.20988.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9391.20988.1
Unique NamemRNA_Ecto-sp13_S_contig9391.20988.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9391.20988.1 vs. uniprot
Match: A0A6H5K008_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K008_9PHAE)

HSP 1 Score: 890 bits (2299), Expect = 5.370e-316
Identity = 513/595 (86.22%), Postives = 528/595 (88.74%), Query Frame = 1 
Query:    1 STAASVAWSLRNPDDGKSVAPPAPHQQQEGKAGDVRGRFSRATVLALASLVLARRLARAGGPCLPPRVQATMGLGDDDALLLVSEGLRLARRAFETELCDDSQRQQHPPSAAAAEEGLRGRDLLGGEVLLERKVGGPAASHPSGTTVARSLLEWLTDSEDGRDAPEFAQGLPLSAATVSSSCSPRGKSPSPSGGSVDHDRAPSTGSVTASDSATRHSKRAHSSAYHDARGGRGVSGEEGGPAARKRQRLGSLPGGANGWDSGSASPCSRAADRGCAAPAEERAGSSTEEYASAADAFPSPPPSTEXXXXXRTPSQDAMYSDGATPRSPPSFSAGGASFVSGDTTLSSDRRPRGWGRVLFSAQSSDKMSEATQSPPRTRGPPTALSASSPEERNARWEVLADRVLEALDDRHGGVVGGSSAGADGSCGGLLTPEGEGNGSSSSGFAAEVAPILPDRCPLPRALAGDTVRSSPPGSRPFSPITPPAPPPVFHDLGAHGTPGEQGEEALTSSRVSSTADRRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGVRAQGLGVVAAGCTTLMSAVALAFRAAPSSTAAEADADAQEDWWW 1785
            STAA+VAWSLRNPDDG+SVAPPAPHQQQ+GKAGDVRGRFSRATVLALASLVLARRLARAGGPCLPPRVQATMGLGD DALLLVSEGLRLARRAFETELCDDSQ QQH  +AAAAE GLR +D LGGEVLLE+KV GPAASHPSGTT+ARSLLEWLTDSEDGRDAPEFAQG+PLSAATVSSSCSPR KSPSPSG SVDHDRAPS G VTASD ATR  KRA SSAYHD RGG GVSGEEGGP ARK QRLGS PGG NG DSGSASP SRAAD  CAAPAE+RAGSSTEEYASAADAFPS PPSTE     RTPSQDAMYSDGATPRSPPSFSAGGAS +SGDTTLS  RRPRGWGRVLFSAQSSDKMSEATQSPPRTRGPP ALSASSPEERNARWEVLADR+LEALD+RHGGVVGG SAGADG CGGL TPEGEGN SSSSGFAA VAPILPDRCPLPRALAGDTV+SSPPG  PFSPI      PVFHDLG HG P EQGEEALTSSRVSS     G XXXXXXXXX      XXXXXXXXXXXXGRGVRAQGLGVVAAGCTTLMSAVALA RAA SST A+ADADA+EDWWW
Sbjct:  351 STAAAVAWSLRNPDDGESVAPPAPHQQQQGKAGDVRGRFSRATVLALASLVLARRLARAGGPCLPPRVQATMGLGDGDALLLVSEGLRLARRAFETELCDDSQLQQHSATAAAAEGGLRRKDFLGGEVLLEKKVEGPAASHPSGTTIARSLLEWLTDSEDGRDAPEFAQGIPLSAATVSSSCSPREKSPSPSGCSVDHDRAPSPGGVTASDGATRRGKRALSSAYHDPRGGSGVSGEEGGPDARKWQRLGSPPGGPNGRDSGSASPRSRAADGDCAAPAEKRAGSSTEEYASAADAFPSLPPSTETSPPPRTPSQDAMYSDGATPRSPPSFSAGGASSISGDTTLSGGRRPRGWGRVLFSAQSSDKMSEATQSPPRTRGPPAALSASSPEERNARWEVLADRILEALDERHGGVVGGISAGADGCCGGLSTPEGEGNDSSSSGFAAGVAPILPDRCPLPRALAGDTVKSSPPGYPPFSPIXXXXXXPVFHDLGDHGAPDEQGEEALTSSRVSSAVACGGXXXXXXXXXXERTGGVXXXXXXXXXXXXGRGVRAQGLGVVAAGCTTLMSAVALACRAASSSTVADADADAREDWWW 945
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BLAST of mRNA_Ecto-sp13_S_contig9391.20988.1 vs. uniprot
Match: D7FYP4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYP4_ECTSI)

HSP 1 Score: 709 bits (1830), Expect = 1.670e-245
Identity = 457/608 (75.16%), Postives = 463/608 (76.15%), Query Frame = 1 
Query:    4 TAASVAWSLRNPDDGKSVAPPAPHQQQE--GKAGDVRGRFSRATVLALASLVLARRLARAGGPCLPPRVQATMGLGDDDALLLVSEGLRLARRAFETELCDDSQRQQHPPSAAAA-----EEGLRGRDLLGGEVLLERKVGGPAA-SHPSGTTVARSLLEWLTDSEDGRDAPEFAQGLPLSAATVSSSCSPRGKSPSPSGGSVDHDRAPSTGSVTASDSATRHSKRAHSSAYHDARGGRGVSGEEGGPAARKRQRLGSLPGGANGWDSGSASPCSRAADRGCAAPAEERAGSSTEEYASAADAFPSPPPSTEXXXXXRTPSQDAMYSDGATPRSPPSFSAGGASFVSGDTTLSSDRRPRGWGRVLFSAQSSDKMSEATQSPPRTRGPPTALSASSPEERNARWEVLADRVLEALDDRHGGVVGGSS-AGADGSCGGLLTPEGEGNGSSSSGFAAEVAPILPDRCPLPRALAGDTVRSSPPGSRPFSPITPPAPPPVFHDLGAHGTPGEQGEEALTSSRVSSTADRRGGXXXXXXXXXXXXXXXXXXXXXXXXXXXGR-----GVRAQGLGVVAAGCTTLMSAVALAFRAAPSSTAAEADADAQEDWWW 1785
            TAA+VAWSLRNPDDGKSVAPPAPHQQQ+  GKAGDVRGRFSRATVLALASLVLARRLARAGG CLPPRVQATMGLGD DALLLVSEGLRLARRAFETELCDDS                 E GLRGRD LGGEVLLERKV GPA  SHPSGTT+AR LLEWLTDS+DGRDAPEFAQGLPLS ATVSSSCSPR KSPSPS GSV HDR PS G VTASD ATR  KRA SSAYHDARGG GV  EEGGPAARKRQRLGS PGG +G  SGSASP SRAADR C APAEERAGSSTEEYASAADAFPSPPPST       TPSQDAM SDGATPRSPPSFSAGGASFVSGDTTLS  RRPRGWGRVLFSAQSSDKMSEATQSPPRTRGPP A SASSPEERNARWEVLADRVLEALDDRHGGVVGGSS AGADG CGGL TPE                                       GS PFSPITPP    VFHD                             XXXXXXXXXXXXXXXXXXXXXXXXXXX       G RAQGLGVVAAGCTTLMSAVALAFRAA SSTAAEA+ADAQEDWWW
Sbjct:  350 TAAAVAWSLRNPDDGKSVAPPAPHQQQQQHGKAGDVRGRFSRATVLALASLVLARRLARAGGACLPPRVQATMGLGDGDALLLVSEGLRLARRAFETELCDDSXXXXXXXXXXXXXXXXXEGGLRGRDFLGGEVLLERKVEGPATGSHPSGTTIARPLLEWLTDSDDGRDAPEFAQGLPLSTATVSSSCSPREKSPSPSRGSVAHDRVPSPGRVTASDGATRRGKRARSSAYHDARGGSGVPREEGGPAARKRQRLGSPPGGPSGRVSGSASPRSRAADRSCFAPAEERAGSSTEEYASAADAFPSPPPSTSPPP--HTPSQDAMDSDGATPRSPPSFSAGGASFVSGDTTLSGGRRPRGWGRVLFSAQSSDKMSEATQSPPRTRGPPAAPSASSPEERNARWEVLADRVLEALDDRHGGVVGGSSSAGADGCCGGLSTPE---------------------------------------GSPPFSPITPPGXXTVFHDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGARAQGLGVVAAGCTTLMSAVALAFRAASSSTAAEAEADAQEDWWW 916
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9391.20988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K008_9PHAE5.370e-31686.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FYP4_ECTSI1.670e-24575.16Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9391contigEcto-sp13_S_contig9391:4549..6336 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1788
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_004220.1
Cds size1788
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464206.999063-CDS-Ecto-sp13_S_contig9391:4548..63361681464206.999063-CDS-Ecto-sp13_S_contig9391:4548..6336Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9391 4549..6336 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9391.20988.1prot_Ecto-sp13_S_contig9391.20988.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9391 4549..6336 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9391.20988.1

>prot_Ecto-sp13_S_contig9391.20988.1 ID=prot_Ecto-sp13_S_contig9391.20988.1|Name=mRNA_Ecto-sp13_S_contig9391.20988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=596bp
STAASVAWSLRNPDDGKSVAPPAPHQQQEGKAGDVRGRFSRATVLALASL
VLARRLARAGGPCLPPRVQATMGLGDDDALLLVSEGLRLARRAFETELCD
DSQRQQHPPSAAAAEEGLRGRDLLGGEVLLERKVGGPAASHPSGTTVARS
LLEWLTDSEDGRDAPEFAQGLPLSAATVSSSCSPRGKSPSPSGGSVDHDR
APSTGSVTASDSATRHSKRAHSSAYHDARGGRGVSGEEGGPAARKRQRLG
SLPGGANGWDSGSASPCSRAADRGCAAPAEERAGSSTEEYASAADAFPSP
PPSTETSPPPRTPSQDAMYSDGATPRSPPSFSAGGASFVSGDTTLSSDRR
PRGWGRVLFSAQSSDKMSEATQSPPRTRGPPTALSASSPEERNARWEVLA
DRVLEALDDRHGGVVGGSSAGADGSCGGLLTPEGEGNGSSSSGFAAEVAP
ILPDRCPLPRALAGDTVRSSPPGSRPFSPITPPAPPPVFHDLGAHGTPGE
QGEEALTSSRVSSTADRRGGGGGGSGVSAEGTGGVGAASLATAAAAAGRG
VRAQGLGVVAAGCTTLMSAVALAFRAAPSSTAAEADADAQEDWWW*
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mRNA from alignment at Ecto-sp13_S_contig9391:4549..6336-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9391.20988.1 ID=mRNA_Ecto-sp13_S_contig9391.20988.1|Name=mRNA_Ecto-sp13_S_contig9391.20988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1788bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9391:4549..6336- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCACCGCCGCCTCTGTCGCGTGGTCTTTGCGGAACCCGGACGATGGGAA
AAGCGTCGCGCCGCCGGCACCGCATCAGCAGCAGGAAGGCAAGGCCGGCG
ACGTCCGCGGTCGGTTCTCGCGAGCCACCGTCCTCGCGCTGGCGTCTCTT
GTGCTGGCTCGGCGCCTCGCCCGCGCGGGGGGACCGTGCCTCCCTCCCAG
AGTGCAGGCGACGATGGGCCTGGGAGATGACGACGCTCTGCTGCTCGTGT
CGGAGGGGCTCCGGTTGGCGCGACGGGCGTTCGAGACAGAGCTGTGTGAC
GACTCGCAACGACAGCAACACCCCCCATCTGCTGCTGCTGCCGAGGAGGG
GCTCCGCGGAAGGGACTTACTCGGGGGGGAGGTCCTGCTGGAGAGGAAAG
TCGGGGGCCCGGCGGCGAGCCATCCGTCTGGAACCACCGTCGCGAGGTCT
CTGCTGGAGTGGCTCACGGACAGCGAGGACGGCCGCGATGCCCCCGAGTT
CGCCCAAGGGCTTCCCCTGTCGGCCGCGACCGTCTCTTCCTCTTGTTCCC
CTCGAGGAAAGAGTCCTTCCCCGAGCGGCGGCAGCGTGGATCATGATCGT
GCTCCTAGCACGGGGAGCGTTACCGCCAGCGACAGCGCAACCAGGCACAG
CAAACGGGCGCACAGCTCGGCCTACCACGACGCTCGCGGAGGTAGAGGCG
TCTCTGGGGAGGAAGGTGGTCCAGCCGCGCGGAAACGGCAGCGTTTGGGG
AGCCTGCCCGGGGGGGCCAACGGCTGGGATAGCGGCAGCGCTTCGCCCTG
CTCGCGAGCCGCCGACAGGGGTTGCGCCGCCCCGGCGGAAGAGCGGGCCG
GGTCTTCTACTGAGGAGTACGCGTCTGCCGCGGACGCGTTCCCTTCTCCG
CCCCCGTCCACGGAAACCTCGCCGCCGCCCCGCACACCGAGCCAGGACGC
CATGTACAGCGACGGCGCGACGCCCCGATCGCCACCATCGTTTTCGGCTG
GTGGGGCGAGCTTCGTTAGCGGGGACACCACTCTTTCCAGCGACCGGCGA
CCGCGAGGCTGGGGGAGGGTGTTATTCTCCGCACAATCCTCCGACAAGAT
GTCCGAAGCGACTCAATCCCCACCGCGGACGAGAGGACCGCCGACGGCAC
TGTCGGCTAGCAGCCCGGAGGAAAGGAACGCGCGGTGGGAAGTTCTAGCA
GACCGGGTTCTGGAGGCCTTGGACGACCGCCACGGTGGCGTAGTCGGCGG
TAGCTCGGCCGGCGCCGATGGTTCTTGCGGTGGGCTGTTGACACCGGAAG
GTGAGGGCAATGGTAGCAGCAGCAGCGGCTTCGCTGCCGAAGTGGCCCCG
ATCCTTCCCGATCGCTGTCCTCTCCCCCGGGCGCTCGCCGGTGACACCGT
CAGGTCTTCTCCACCAGGGTCCCGCCCGTTTTCCCCCATCACGCCCCCGG
CCCCCCCCCCGGTCTTTCACGACTTGGGCGCCCACGGTACCCCCGGCGAG
CAGGGAGAAGAGGCGTTGACGTCTTCTCGCGTGAGCTCCACTGCAGATCG
TCGTGGTGGCGGTGGTGGTGGCAGTGGTGTGTCGGCAGAGGGAACTGGAG
GGGTCGGGGCGGCGTCGCTCGCAACAGCTGCAGCCGCAGCAGGAAGAGGA
GTGAGGGCGCAGGGGCTAGGAGTTGTCGCCGCGGGGTGTACAACACTCAT
GTCAGCCGTGGCGTTGGCGTTTCGAGCAGCACCGTCCTCTACGGCGGCTG
AGGCTGACGCTGACGCTCAGGAGGACTGGTGGTGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9391:4549..6336-

>mRNA_Ecto-sp13_S_contig9391.20988.1 ID=mRNA_Ecto-sp13_S_contig9391.20988.1|Name=mRNA_Ecto-sp13_S_contig9391.20988.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1788bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9391:4549..6336- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCACCGCCGCCTCTGTCGCGTGGTCTTTGCGGAACCCGGACGATGGGAA
AAGCGTCGCGCCGCCGGCACCGCATCAGCAGCAGGAAGGCAAGGCCGGCG
ACGTCCGCGGTCGGTTCTCGCGAGCCACCGTCCTCGCGCTGGCGTCTCTT
GTGCTGGCTCGGCGCCTCGCCCGCGCGGGGGGACCGTGCCTCCCTCCCAG
AGTGCAGGCGACGATGGGCCTGGGAGATGACGACGCTCTGCTGCTCGTGT
CGGAGGGGCTCCGGTTGGCGCGACGGGCGTTCGAGACAGAGCTGTGTGAC
GACTCGCAACGACAGCAACACCCCCCATCTGCTGCTGCTGCCGAGGAGGG
GCTCCGCGGAAGGGACTTACTCGGGGGGGAGGTCCTGCTGGAGAGGAAAG
TCGGGGGCCCGGCGGCGAGCCATCCGTCTGGAACCACCGTCGCGAGGTCT
CTGCTGGAGTGGCTCACGGACAGCGAGGACGGCCGCGATGCCCCCGAGTT
CGCCCAAGGGCTTCCCCTGTCGGCCGCGACCGTCTCTTCCTCTTGTTCCC
CTCGAGGAAAGAGTCCTTCCCCGAGCGGCGGCAGCGTGGATCATGATCGT
GCTCCTAGCACGGGGAGCGTTACCGCCAGCGACAGCGCAACCAGGCACAG
CAAACGGGCGCACAGCTCGGCCTACCACGACGCTCGCGGAGGTAGAGGCG
TCTCTGGGGAGGAAGGTGGTCCAGCCGCGCGGAAACGGCAGCGTTTGGGG
AGCCTGCCCGGGGGGGCCAACGGCTGGGATAGCGGCAGCGCTTCGCCCTG
CTCGCGAGCCGCCGACAGGGGTTGCGCCGCCCCGGCGGAAGAGCGGGCCG
GGTCTTCTACTGAGGAGTACGCGTCTGCCGCGGACGCGTTCCCTTCTCCG
CCCCCGTCCACGGAAACCTCGCCGCCGCCCCGCACACCGAGCCAGGACGC
CATGTACAGCGACGGCGCGACGCCCCGATCGCCACCATCGTTTTCGGCTG
GTGGGGCGAGCTTCGTTAGCGGGGACACCACTCTTTCCAGCGACCGGCGA
CCGCGAGGCTGGGGGAGGGTGTTATTCTCCGCACAATCCTCCGACAAGAT
GTCCGAAGCGACTCAATCCCCACCGCGGACGAGAGGACCGCCGACGGCAC
TGTCGGCTAGCAGCCCGGAGGAAAGGAACGCGCGGTGGGAAGTTCTAGCA
GACCGGGTTCTGGAGGCCTTGGACGACCGCCACGGTGGCGTAGTCGGCGG
TAGCTCGGCCGGCGCCGATGGTTCTTGCGGTGGGCTGTTGACACCGGAAG
GTGAGGGCAATGGTAGCAGCAGCAGCGGCTTCGCTGCCGAAGTGGCCCCG
ATCCTTCCCGATCGCTGTCCTCTCCCCCGGGCGCTCGCCGGTGACACCGT
CAGGTCTTCTCCACCAGGGTCCCGCCCGTTTTCCCCCATCACGCCCCCGG
CCCCCCCCCCGGTCTTTCACGACTTGGGCGCCCACGGTACCCCCGGCGAG
CAGGGAGAAGAGGCGTTGACGTCTTCTCGCGTGAGCTCCACTGCAGATCG
TCGTGGTGGCGGTGGTGGTGGCAGTGGTGTGTCGGCAGAGGGAACTGGAG
GGGTCGGGGCGGCGTCGCTCGCAACAGCTGCAGCCGCAGCAGGAAGAGGA
GTGAGGGCGCAGGGGCTAGGAGTTGTCGCCGCGGGGTGTACAACACTCAT
GTCAGCCGTGGCGTTGGCGTTTCGAGCAGCACCGTCCTCTACGGCGGCTG
AGGCTGACGCTGACGCTCAGGAGGACTGGTGGTGGTAG
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