mRNA_Ecto-sp13_S_contig9388.20984.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9388.20984.1
Unique NamemRNA_Ecto-sp13_S_contig9388.20984.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9388.20984.1 vs. uniprot
Match: A0A6H5JW76_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW76_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 2.110e-51
Identity = 86/89 (96.63%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:    1 LVQMIRAILTYIQKKAEKSGNKVVQYIACCCVCCFWCLENCLRFINKNAYVQTAIFSTNFCTSARNAFYLIARNIARVAAVSILGEFVL 267
            +V+MIRAILTYIQKKAEKSGNKVVQYIACCCVCCFWCLENCLRFINKNAYVQTAIFSTNFCTSARNAFYLIARNIARVAAV+ILGEFVL
Sbjct:  413 IVEMIRAILTYIQKKAEKSGNKVVQYIACCCVCCFWCLENCLRFINKNAYVQTAIFSTNFCTSARNAFYLIARNIARVAAVTILGEFVL 501
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BLAST of mRNA_Ecto-sp13_S_contig9388.20984.1 vs. uniprot
Match: A0A835Z6J7_9STRA (Choline transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J7_9STRA)

HSP 1 Score: 135 bits (339), Expect = 4.310e-35
Identity = 57/89 (64.04%), Postives = 74/89 (83.15%), Query Frame = 1 
Query:    1 LVQMIRAILTYIQKKAEKSGNKVVQYIACCCVCCFWCLENCLRFINKNAYVQTAIFSTNFCTSARNAFYLIARNIARVAAVSILGEFVL 267
            ++QMIRAI+ + QKKA+ SGNK+ QY  CCC CCFWCL+ C++FINKNAY+QTA+FST FC S + AF+LIARNI RV AVS++ EF++
Sbjct:  434 IIQMIRAIIAWFQKKAKASGNKIAQYALCCCQCCFWCLQKCMQFINKNAYIQTALFSTGFCKSGKEAFFLIARNIVRVGAVSMVSEFMI 522
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BLAST of mRNA_Ecto-sp13_S_contig9388.20984.1 vs. uniprot
Match: A0A7S1XUX7_9STRA (Choline transporter-like protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XUX7_9STRA)

HSP 1 Score: 129 bits (324), Expect = 1.250e-34
Identity = 56/88 (63.64%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:    1 LVQMIRAILTYIQKKAEKSGNKVVQYIACCCVCCFWCLENCLRFINKNAYVQTAIFSTNFCTSARNAFYLIARNIARVAAVSILGEFV 264
            LVQ++R  + Y Q+KA++SG+KV +Y+  CC CC WCLE  L+F+N+NAY+QTAIFST+FC SARNAF+LIARNIARV AV+++G FV
Sbjct:  135 LVQIVRTAIAYAQRKAKESGSKVAEYVLACCTCCIWCLEKFLKFLNRNAYIQTAIFSTSFCPSARNAFFLIARNIARVGAVTLVGGFV 222
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BLAST of mRNA_Ecto-sp13_S_contig9388.20984.1 vs. uniprot
Match: A0A7S3Y6D2_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6D2_HETAK)

HSP 1 Score: 124 bits (311), Expect = 3.560e-31
Identity = 52/89 (58.43%), Postives = 75/89 (84.27%), Query Frame = 1 
Query:    1 LVQMIRAILTYIQKKAEKSGNKVVQYIACCCVCCFWCLENCLRFINKNAYVQTAIFSTNFCTSARNAFYLIARNIARVAAVSILGEFVL 267
            +++ IRA++ Y+QKKA++SGNK+ Q + C   CC WCLE C++F+NKNAY+QTAIF  +FC++A+ AF+LIARNI R+AAVS++G+FVL
Sbjct:  500 IIKTIRAVIAYMQKKAKQSGNKLAQIVLCVIQCCMWCLEKCMKFLNKNAYIQTAIFGKSFCSAAKAAFFLIARNILRIAAVSLVGDFVL 588
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BLAST of mRNA_Ecto-sp13_S_contig9388.20984.1 vs. uniprot
Match: D8LIJ7_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ7_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 8.440e-31
Identity = 53/88 (60.23%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    1 LVQMIRAILTYIQKKAEKSGNKVVQYIACCCVCCFWCLENCLRFINKNAYVQTAIFSTNFCTSARNAFYLIARNIARVAAVSILGEFV 264
            +++ IRA+LTY+QKK +KSG+K  Q + CC  C FWCLE C++FINKNAY+Q AIFST+FC S++NAF+LIARN+ RV AV+++ +FV
Sbjct:  443 IIKTIRAMLTYMQKKLQKSGSKAAQAVLCCLSCFFWCLEKCVKFINKNAYIQVAIFSTSFCRSSKNAFWLIARNLGRVGAVTVVTDFV 530
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BLAST of mRNA_Ecto-sp13_S_contig9388.20984.1 vs. uniprot
Match: A0A6H5L007_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L007_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 9.320e-31
Identity = 54/84 (64.29%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:   13 IRAILTYIQKKAEKSGNKVVQYIACCCVCCFWCLENCLRFINKNAYVQTAIFSTNFCTSARNAFYLIARNIARVAAVSILGEFV 264
            IRA+LTY+QKK +KSG+K  Q + CC  C FWCLE C+RFINKNAY+Q AIFST+FC S++NAF+LIARN+ RV AV+++ +FV
Sbjct:  488 IRAVLTYMQKKLQKSGSKAAQAVLCCLSCFFWCLEKCVRFINKNAYIQVAIFSTSFCRSSKNAFWLIARNLGRVGAVTVVTDFV 571
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BLAST of mRNA_Ecto-sp13_S_contig9388.20984.1 vs. uniprot
Match: A0A7R9YAE8_9STRA (Choline transporter-like protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YAE8_9STRA)

HSP 1 Score: 123 bits (308), Expect = 9.420e-31
Identity = 51/89 (57.30%), Postives = 73/89 (82.02%), Query Frame = 1 
Query:    1 LVQMIRAILTYIQKKAEKSGNKVVQYIACCCVCCFWCLENCLRFINKNAYVQTAIFSTNFCTSARNAFYLIARNIARVAAVSILGEFVL 267
            +VQ+IRA++TY+QKKA++SGNKV +YI C C CCFWC E C++F+++NAY+QTAIF   FC+ A++AF+LI RN  RV A++ +G FV+
Sbjct:  532 IVQIIRAVITYMQKKAKESGNKVAEYILCLCQCCFWCFEKCVKFLSQNAYIQTAIFGKGFCSGAKDAFFLILRNFLRVGALTAVGGFVM 620
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BLAST of mRNA_Ecto-sp13_S_contig9388.20984.1 vs. uniprot
Match: A0A1Z5JIP5_FISSO (Choline transporter-like protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JIP5_FISSO)

HSP 1 Score: 122 bits (307), Expect = 1.220e-30
Identity = 55/89 (61.80%), Postives = 70/89 (78.65%), Query Frame = 1 
Query:    1 LVQMIRAILTYIQKKAEKSGNKVVQYIACCCVCCFWCLENCLRFINKNAYVQTAIFSTNFCTSARNAFYLIARNIARVAAVSILGEFVL 267
            +VQ IR I+  +QKKA+++ NK+ +YI CCC CCFWCLE CL+FINKNAY+QTAIFST+FC S R +F+LI RN ARV AV+ +   VL
Sbjct:  499 IVQFIRYIIAKLQKKAKETQNKIAEYILCCCQCCFWCLERCLKFINKNAYIQTAIFSTSFCKSCRASFFLIFRNAARVGAVTYVSSAVL 587
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9388.20984.1 vs. uniprot
Match: A0A7S4QYJ3_9STRA (Choline transporter-like protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYJ3_9STRA)

HSP 1 Score: 115 bits (288), Expect = 7.270e-30
Identity = 46/81 (56.79%), Postives = 66/81 (81.48%), Query Frame = 1 
Query:    1 LVQMIRAILTYIQKKAEKSGNKVVQYIACCCVCCFWCLENCLRFINKNAYVQTAIFSTNFCTSARNAFYLIARNIARVAAV 243
            ++++IR I+ Y QKKA+++ +K+   + CCC CCF+CLE C++F+NKNAY+ TAIF+TNFCTSAR AF+LI RN AR+ A+
Sbjct:   75 IIKLIRTIIAYFQKKAKEADSKIATAVLCCCQCCFYCLEKCVKFLNKNAYIHTAIFATNFCTSAREAFFLILRNAARIGAI 155
[Close]
BLAST of mRNA_Ecto-sp13_S_contig9388.20984.1 vs. uniprot
Match: A7RWE1_NEMVE (Choline transporter-like protein n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7RWE1_NEMVE)

HSP 1 Score: 120 bits (301), Expect = 7.630e-30
Identity = 55/91 (60.44%), Postives = 71/91 (78.02%), Query Frame = 1 
Query:    1 LVQMIRAILTYIQKKAEKSG--NKVVQYIACCCVCCFWCLENCLRFINKNAYVQTAIFSTNFCTSARNAFYLIARNIARVAAVSILGEFVL 267
            +VQ IRA+L YI +K ++SG  NK V++I CCC CCFWCLE CLRF+NKNAY+  AI+  NFCTSA++AF L+ RNI RVAAV+ +  F+L
Sbjct:  455 IVQFIRAVLEYIDRKLKESGHDNKAVKFIMCCCKCCFWCLEKCLRFLNKNAYIMIAIYGKNFCTSAKDAFQLLLRNILRVAAVNSVTSFLL 545
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9388.20984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JW76_9PHAE2.110e-5196.63Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A835Z6J7_9STRA4.310e-3564.04Choline transporter-like protein n=1 Tax=Tribonema... [more]
A0A7S1XUX7_9STRA1.250e-3463.64Choline transporter-like protein n=1 Tax=Phaeomona... [more]
A0A7S3Y6D2_HETAK3.560e-3158.43Choline transporter-like protein n=1 Tax=Heterosig... [more]
D8LIJ7_ECTSI8.440e-3160.23Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A6H5L007_9PHAE9.320e-3164.29Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A7R9YAE8_9STRA9.420e-3157.30Choline transporter-like protein n=1 Tax=Pinguioco... [more]
A0A1Z5JIP5_FISSO1.220e-3061.80Choline transporter-like protein n=2 Tax=Fistulife... [more]
A0A7S4QYJ3_9STRA7.270e-3056.79Choline transporter-like protein n=1 Tax=Ditylum b... [more]
A7RWE1_NEMVE7.630e-3060.44Choline transporter-like protein n=3 Tax=Nematoste... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9388contigEcto-sp13_S_contig9388:4929..5699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score119.4
Seed ortholog evalue8.3e-25
Seed eggNOG ortholog2880.D8LIJ7
Model size267
KEGG koko:K06515,ko:K15377
KEGG TC2.A.92.1,2.A.92.1.1
KEGG Pathwayko05231,map05231
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.choline transmembrane transporter activity
EggNOG OGsKOG1362@1,KOG1362@2759
Cds size258
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04090,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464206.7015138-CDS-Ecto-sp13_S_contig9388:4928..50391681464206.7015138-CDS-Ecto-sp13_S_contig9388:4928..5039Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9388 4929..5039 -
1681464206.720152-CDS-Ecto-sp13_S_contig9388:5543..56901681464206.720152-CDS-Ecto-sp13_S_contig9388:5543..5690Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9388 5544..5690 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464206.7360535-UTR-Ecto-sp13_S_contig9388:5690..56991681464206.7360535-UTR-Ecto-sp13_S_contig9388:5690..5699Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9388 5691..5699 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9388.20984.1prot_Ecto-sp13_S_contig9388.20984.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9388 4929..5690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9388.20984.1

>prot_Ecto-sp13_S_contig9388.20984.1 ID=prot_Ecto-sp13_S_contig9388.20984.1|Name=mRNA_Ecto-sp13_S_contig9388.20984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=86bp
MIRAILTYIQKKAEKSGNKVVQYIACCCVCCFWCLENCLRFINKNAYVQT
AIFSTNFCTSARNAFYLIARNIARVAAVSILGEFVL
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mRNA from alignment at Ecto-sp13_S_contig9388:4929..5699-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9388.20984.1 ID=mRNA_Ecto-sp13_S_contig9388.20984.1|Name=mRNA_Ecto-sp13_S_contig9388.20984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=771bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9388:4929..5699- (Ectocarpus species13 EcNAP12_S_4_19m)
CTCGTGCAGATGATCCGAGCTATCCTGACGTACATCCAGAAGAAGGCCGA
AAAGTCGGGCAACAAGGTCGTGCAGTACATCGCCTGCTGTTGCGTGTGCT
GCTTCTGGTGCCTGGAGAACTGCCTTCGGTTCATCAACAAGAACGCCTAC
GTCCAGGTAGGTAACCGTCTCAACGGTCCCGGTTGCGTTTCCTCCTTCCC
CCCGATCTGCTTTCACCCCTGCGGTTTCTGCTCTTGACGCTATATGTTGC
CCGGTTGTCATCGGAGCAATGTCACCCTCCATCTTGAGGGGGTAGACCAA
GCCGGGGTGCCTGCGGACGATCAAGAGCTACTGTTTCGTTCTTATCTACG
GGGCGAAGCCCTTGGTTCATGTGAATCGCGAAAGGCCGGCCTCGGTTATT
CCCTTTTAAAGCACAACATACTTGCCTCCTTTTGTGGGCCCCGGGGACGT
TTTCGGTACTCCCTTTGCCCCCGTGCGTATCCGCCCGAACCCGACATATT
GTTCGTACCTAGATACTAACAAAATTTTGTTCGGTGAAGACTTCGAACCG
TGCAAAACGCGTCTGCTTGCTAATGCATCTCACTACAACCGACGAACTTG
GTGAGTCGCAATAAGGCTCAGCCCTTTCTTCTCCCCCTGGTTGCTGTTTT
CACGCCACAGACTGCCATCTTCTCTACGAACTTCTGCACCTCGGCGAGAA
ACGCCTTCTACCTCATCGCTAGGAACATCGCCAGGGTCGCCGCTGTGTCT
ATCCTGGGGGAGTTCGTCCTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9388:4929..5699-

>mRNA_Ecto-sp13_S_contig9388.20984.1 ID=mRNA_Ecto-sp13_S_contig9388.20984.1|Name=mRNA_Ecto-sp13_S_contig9388.20984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=258bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9388:4929..5699- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCCGAGCTATCCTGACGTACATCCAGAAGAAGGCCGAAAAGTCGGG
CAACAAGGTCGTGCAGTACATCGCCTGCTGTTGCGTGTGCTGCTTCTGGT
GCCTGGAGAACTGCCTTCGGTTCATCAACAAGAACGCCTACGTCCAGACT
GCCATCTTCTCTACGAACTTCTGCACCTCGGCGAGAAACGCCTTCTACCT
CATCGCTAGGAACATCGCCAGGGTCGCCGCTGTGTCTATCCTGGGGGAGT
TCGTCCTC
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