mRNA_Ecto-sp13_S_contig937.20968.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig937.20968.1
Unique NamemRNA_Ecto-sp13_S_contig937.20968.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig937.20968.1 vs. uniprot
Match: D8LN79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN79_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 3.080e-82
Identity = 124/140 (88.57%), Postives = 128/140 (91.43%), Query Frame = 1 
Query:    1 MKYGIVACFVWLYTAADALISTAPIGSGAGASRRGRIHRHLSGATLLALPWRSASGREMETRRLCAADSIHRSYPMMCGVADYDQQELVLREFALPLQASPGSYERRVRAECLLEGGETATVVRWHISHADEATGRAHIE 420
            MKY IVA FVWLYTAADALISTAPIGS AGASRRGRIHRHLS  TLL LP RSA+ +EM TRRLCAADSIH+SY MMCGVADYDQQELVLREFALPLQASPGSYERRVRAECL EGGE ATVVRWHISHADEATGRAH+E
Sbjct:    1 MKYSIVAWFVWLYTAADALISTAPIGSSAGASRRGRIHRHLSAVTLLTLPRRSAARQEMGTRRLCAADSIHKSYSMMCGVADYDQQELVLREFALPLQASPGSYERRVRAECLREGGEAATVVRWHISHADEATGRAHVE 140
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BLAST of mRNA_Ecto-sp13_S_contig937.20968.1 vs. uniprot
Match: A0A6H5JKU9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKU9_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 2.080e-75
Identity = 121/140 (86.43%), Postives = 125/140 (89.29%), Query Frame = 1 
Query:    1 MKYGIVACFVWLYTAADALISTAPIGSGAGASRRGRIHRHLSGATLLALPWRSASGREMETRRLCAADSIHRSYPMMCGVADYDQQELVLREFALPLQASPGSYERRVRAECLLEGGETATVVRWHISHADEATGRAHIE 420
            MKY IVA FVW YTAADAL +TAPIGS AGAS RGRIHRHLS ATLLALP RS +G+ M TRRLCAADSIHRSYPMM GVAD D QELVLREFALPLQASPGSYERRVRAECL EGGETATVVRWHISHADEATGRAH+E
Sbjct:    1 MKYSIVAWFVW-YTAADALFATAPIGSSAGASHRGRIHRHLSAATLLALPRRSDAGQGMGTRRLCAADSIHRSYPMMRGVAD-DHQELVLREFALPLQASPGSYERRVRAECLREGGETATVVRWHISHADEATGRAHVE 138
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig937.20968.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LN79_ECTSI3.080e-8288.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKU9_9PHAE2.080e-7586.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig937contigEcto-sp13_S_contig937:3932..4351 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size420
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_003840.1
Cds size420
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464205.2867062-CDS-Ecto-sp13_S_contig937:3931..43511681464205.2867062-CDS-Ecto-sp13_S_contig937:3931..4351Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig937 3932..4351 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig937.20968.1prot_Ecto-sp13_S_contig937.20968.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig937 3932..4351 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig937.20968.1

>prot_Ecto-sp13_S_contig937.20968.1 ID=prot_Ecto-sp13_S_contig937.20968.1|Name=mRNA_Ecto-sp13_S_contig937.20968.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=140bp
MKYGIVACFVWLYTAADALISTAPIGSGAGASRRGRIHRHLSGATLLALP
WRSASGREMETRRLCAADSIHRSYPMMCGVADYDQQELVLREFALPLQAS
PGSYERRVRAECLLEGGETATVVRWHISHADEATGRAHIE
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mRNA from alignment at Ecto-sp13_S_contig937:3932..4351-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig937.20968.1 ID=mRNA_Ecto-sp13_S_contig937.20968.1|Name=mRNA_Ecto-sp13_S_contig937.20968.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig937:3932..4351- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTACGGCATCGTTGCTTGCTTTGTCTGGCTCTATACCGCTGCCGA
TGCTTTGATTTCCACCGCACCGATCGGCAGCGGCGCGGGCGCCTCACGCC
GAGGGAGAATACATCGGCATTTATCGGGAGCAACGCTGCTAGCGTTGCCG
TGGCGCAGCGCTTCCGGGCGGGAAATGGAAACCCGAAGGCTCTGCGCTGC
CGACAGCATCCACAGGAGCTACCCGATGATGTGCGGCGTTGCTGACTACG
ACCAGCAAGAGCTGGTACTGAGAGAGTTTGCCCTGCCTCTGCAAGCTAGC
CCAGGGTCATACGAGAGACGGGTTAGGGCGGAGTGTTTACTGGAGGGAGG
CGAGACGGCTACAGTCGTTCGGTGGCACATTAGCCACGCGGACGAAGCGA
CAGGCCGTGCTCATATAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig937:3932..4351-

>mRNA_Ecto-sp13_S_contig937.20968.1 ID=mRNA_Ecto-sp13_S_contig937.20968.1|Name=mRNA_Ecto-sp13_S_contig937.20968.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=420bp|location=Sequence derived from alignment at Ecto-sp13_S_contig937:3932..4351- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTACGGCATCGTTGCTTGCTTTGTCTGGCTCTATACCGCTGCCGA
TGCTTTGATTTCCACCGCACCGATCGGCAGCGGCGCGGGCGCCTCACGCC
GAGGGAGAATACATCGGCATTTATCGGGAGCAACGCTGCTAGCGTTGCCG
TGGCGCAGCGCTTCCGGGCGGGAAATGGAAACCCGAAGGCTCTGCGCTGC
CGACAGCATCCACAGGAGCTACCCGATGATGTGCGGCGTTGCTGACTACG
ACCAGCAAGAGCTGGTACTGAGAGAGTTTGCCCTGCCTCTGCAAGCTAGC
CCAGGGTCATACGAGAGACGGGTTAGGGCGGAGTGTTTACTGGAGGGAGG
CGAGACGGCTACAGTCGTTCGGTGGCACATTAGCCACGCGGACGAAGCGA
CAGGCCGTGCTCATATAGAG
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