mRNA_Ecto-sp13_S_contig9348.20948.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9348.20948.1 vs. uniprot
Match: D8LLP2_ECTSI (Protein cereblon n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLP2_ECTSI) HSP 1 Score: 379 bits (972), Expect = 4.270e-122 Identity = 196/238 (82.35%), Postives = 199/238 (83.61%), Query Frame = 1
Query: 106 GMPRWRGKLDPTLFSFWLAANLPLDDDARQELLMLDSVVMRLRLEIKHLEESRRRALCCASCDRGVAWEGDVFTLPGAEGVVGAYVNPTGYVHQTVTVRDARNLVLVGIPEEEHSWFPGYAWTCVYCAFCNEHLGWRFTAIRPRSGEQERRQRQQGYVLLSSGSPPSXXXXXXXTSPLLPXXXXXXXXXXXXXXXXXALGSSRPTTTATAAGGGAMNEPGLGPASFFGLRRPALVTPR 819
GMPR RGKLDPTLFSFWLAANLPLDDDARQELLMLDSVVMRLRLEIKHLE+SRRR LCCASCDRGVAWEGDVFTLPGAEGVVGAYVNPTGYVHQTVTVRDARNLVLVG PEEEHSWFPGYAWTCVYCAFCNEHLGWRFTAIRP SGEQE RQRQQ LLSSGSP S +S LLP ALGSSRP TTATA G G +NEP LGPASFFGLRRPALVTPR
Sbjct: 358 GMPRRRGKLDPTLFSFWLAANLPLDDDARQELLMLDSVVMRLRLEIKHLEQSRRRELCCASCDRGVAWEGDVFTLPGAEGVVGAYVNPTGYVHQTVTVRDARNLVLVGTPEEEHSWFPGYAWTCVYCAFCNEHLGWRFTAIRPGSGEQEHRQRQQRSGLLSSGSPSSPRASPHSSSSLLPLPSPVAGGASGSGGRG-ALGSSRPATTATAGGEG-VNEPELGPASFFGLRRPALVTPR 593
BLAST of mRNA_Ecto-sp13_S_contig9348.20948.1 vs. uniprot
Match: A0A6H5KP54_9PHAE (CULT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP54_9PHAE) HSP 1 Score: 327 bits (837), Expect = 1.320e-101 Identity = 166/205 (80.98%), Postives = 169/205 (82.44%), Query Frame = 1
Query: 106 GMPRWRGKLDPTLFSFWLAANLPLDDDARQELLMLDSVVMRLRLEIKHLEESRRRALCCASCDRGVAWEGDVFTLPGAEGVVGAYVNPTGYVHQTVTVRDARNLVLVGIPEEEHSWFPGYAWTCVYCAFCNEHLGWRFTAIRPRSGEQERRQRQQGYVLLSSGSPPSXXXXXXXTSPLLPXXXXXXXXXXXXXXXXXALGSSRPT 720
GMPR RGKLDPTLFSFWLAANLPLDD ARQELLMLDSVVMRLR+EIKHLEESRRR LCCASC+RGVAWEGDVFTLPGAEGVVGAYVNPTGYVHQTVTVRDARNLVLVGIPEEEHSWFPGYAWTC YCAFC EHLGWRFTAIRP SGEQERRQRQ VLLSSGSP S TS LLP ALGSS P+
Sbjct: 411 GMPRRRGKLDPTLFSFWLAANLPLDDVARQELLMLDSVVMRLRVEIKHLEESRRRELCCASCNRGVAWEGDVFTLPGAEGVVGAYVNPTGYVHQTVTVRDARNLVLVGIPEEEHSWFPGYAWTCAYCAFCMEHLGWRFTAIRPGSGEQERRQRQPRSVLLSSGSPLSPPASPHATSSLLPLPSTPLAGEASGSGGRGALGSSAPS 615
BLAST of mRNA_Ecto-sp13_S_contig9348.20948.1 vs. uniprot
Match: A0A835YMI6_9STRA (Protein cereblon n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMI6_9STRA) HSP 1 Score: 155 bits (391), Expect = 2.950e-37 Identity = 72/129 (55.81%), Postives = 93/129 (72.09%), Query Frame = 1
Query: 145 FSFWLAANLPLDDDARQELLMLDSVVMRLRLEIKHLEESRRRALCCASCDRGVAWEGDVFTLPGAEGVVGAYVNPTGYVHQTVTVRDARNLVLVGIPEEE-HSWFPGYAWTCVYCAFCNEHLGWRFTAI 528
FSFWLA++LPL DDARQ LL +SVV RLR ++HL+ + + L CA C+ +A F++PGAEG VGAYVNP G+VHQT+T+R+ARN+ L +P SWFPG+AWT YC C+ HLGW+FT I
Sbjct: 332 FSFWLASSLPLGDDARQALLETNSVVERLRAGVRHLQRAAKLPLRCAHCNTPIAQPSHAFSVPGAEGAVGAYVNPAGFVHQTITLREARNVRLQAVPPTATDSWFPGFAWTVAYCRRCDAHLGWKFTPI 460
BLAST of mRNA_Ecto-sp13_S_contig9348.20948.1 vs. uniprot
Match: A0A812CDW9_SEPPH (Protein cereblon n=2 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812CDW9_SEPPH) HSP 1 Score: 146 bits (369), Expect = 3.870e-35 Identity = 71/141 (50.35%), Postives = 92/141 (65.25%), Query Frame = 1
Query: 130 LDPTLFSFWLAANLPLDDDARQELLMLDSVVMRLRLEIKHLEESRRRALCCASCDRGVAWEGDVFTLPGAEGVVGAYVNPTGYVHQTVTVRDARNLVLVGIPEEEHSWFPGYAWTCVYCAFCNEHLGWRFTAIRPRSGEQE 552
LDP FS+W+ NLPLDD R LL +DS V RLR E+ ++ LCC CD VA + DVF++ EG + AYVNP GYVH+T+TV A+ L L+G P E+SWFPGYAWT + C+ C H+GWRFTA + + Q+
Sbjct: 301 LDPIDFSYWVLQNLPLDDSRRIHLLSIDSAVQRLRCELSIMQSCS--ILCCRECDLEVANKNDVFSM-SLEGPLAAYVNPGGYVHETITVYKAKGLTLMGDPSTENSWFPGYAWTIIKCSRCGAHMGWRFTAAKRKLSPQK 438
BLAST of mRNA_Ecto-sp13_S_contig9348.20948.1 vs. uniprot
Match: UPI0014581C3B (protein cereblon-like n=1 Tax=Pecten maximus TaxID=6579 RepID=UPI0014581C3B) HSP 1 Score: 144 bits (363), Expect = 3.610e-34 Identity = 73/143 (51.05%), Postives = 90/143 (62.94%), Query Frame = 1
Query: 103 EGMPRWRGKLDPTLFSFWLAANLPLDDDARQELLMLDSVVMRLRLEIKHLEESRRRALCCASCDRGVAWEGDVFTLPGAEGVVGAYVNPTGYVHQTVTVRDARNLVLVGIPEEEHSWFPGYAWTCVYCAFCNEHLGWRFTAIR 531
E MP+ DP S+W+ NLPLDD R LL +DS V RLR + +E+ LCC C VA + DVF+L EG +GAYVNP GYVH+T+TV A NL L+G P EHSWFPGYAWT C CN H+GW+FT+ +
Sbjct: 312 ENMPQ-----DPVELSYWVTQNLPLDDGLRVNLLSIDSAVQRLRCALSIIEKCS--ILCCKGCGCQVANKRDVFSL-SIEGPLGAYVNPGGYVHETMTVHKAHNLNLIGRPSTEHSWFPGYAWTIAQCRRCNSHMGWKFTSTQ 446
BLAST of mRNA_Ecto-sp13_S_contig9348.20948.1 vs. uniprot
Match: UPI00201F19B2 (protein cereblon-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI00201F19B2) HSP 1 Score: 142 bits (359), Expect = 1.070e-33 Identity = 68/131 (51.91%), Postives = 88/131 (67.18%), Query Frame = 1
Query: 133 DPTLFSFWLAANLPLDDDARQELLMLDSVVMRLRLEIKHLEESRRRALCCASCDRGVAWEGDVFTLPGAEGVVGAYVNPTGYVHQTVTVRDARNLVLVGIPEEEHSWFPGYAWTCVYCAFCNEHLGWRFTA 525
DPT S+W+A NLPLDD R LL L+S V RLR E+ +++ LCC C + + +VF++ EG +GAYVNP G+VH+T+TV +NL L+G P EHSWFPGYAWT V C C+ H+GWRFTA
Sbjct: 305 DPTELSYWVAQNLPLDDSMRLHLLGLNSAVQRLRCELSIIQKCT--VLCCKDCGTQITHKNEVFSM-SMEGPLGAYVNPGGHVHETLTVYKIQNLGLIGRPSTEHSWFPGYAWTIVECKHCSSHMGWRFTA 432
BLAST of mRNA_Ecto-sp13_S_contig9348.20948.1 vs. uniprot
Match: A0A8B6BRU4_MYTGA (Protein cereblon n=3 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6BRU4_MYTGA) HSP 1 Score: 142 bits (358), Expect = 1.290e-33 Identity = 68/131 (51.91%), Postives = 86/131 (65.65%), Query Frame = 1
Query: 133 DPTLFSFWLAANLPLDDDARQELLMLDSVVMRLRLEIKHLEESRRRALCCASCDRGVAWEGDVFTLPGAEGVVGAYVNPTGYVHQTVTVRDARNLVLVGIPEEEHSWFPGYAWTCVYCAFCNEHLGWRFTA 525
DP S+W+ NLPLDD R LL LDS V RLR + +E+ +CC C VA DVF+L EG +GAYVNP G+VH+T+TV ++N+ L+G P +EHSWFPGYAWT YC C H+GW+FTA
Sbjct: 288 DPIELSYWVCQNLPLDDSQRLNLLSLDSAVQRLRCALSIMEKCS--VICCRECKTHVALTNDVFSL-SLEGPLGAYVNPHGHVHETLTVYKSQNINLMGRPTKEHSWFPGYAWTIAYCRRCTNHMGWKFTA 415
BLAST of mRNA_Ecto-sp13_S_contig9348.20948.1 vs. uniprot
Match: UPI001CF4E721 (protein cereblon-like isoform X1 n=6 Tax=Acropora TaxID=6127 RepID=UPI001CF4E721) HSP 1 Score: 141 bits (355), Expect = 3.810e-33 Identity = 67/132 (50.76%), Postives = 91/132 (68.94%), Query Frame = 1
Query: 136 PTLFSFWLAANLPLDDDARQELLMLDSVVMRLRLEIKHLEESRRRALCCASCDRGVAWEGDVFTLPGAEGVVGAYVNPTGYVHQTVTVRDARNLVLVGIPEEEHSWFPGYAWTCVYCAFCNEHLGWRFTAIR 531
PT FSFW+AAN+PLDDD R ++L +D RLR E++ + + A CC+ CD +A +GD+F++ +G +GAYVNP G VH+T+T A++ L G P E+SWFPGYAWT CA C HLGWRFTA++
Sbjct: 302 PTEFSFWVAANMPLDDDLRLQVLGIDCPTQRLRRELEIVRKCG--AFCCSECDTKIAEKGDLFSM-SLDGPLGAYVNPNGCVHETLTFYRAKSFRLRGRPTTENSWFPGYAWTIAECAQCGNHLGWRFTAVK 430
BLAST of mRNA_Ecto-sp13_S_contig9348.20948.1 vs. uniprot
Match: S4RRJ7_PETMA (Cereblon n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RRJ7_PETMA) HSP 1 Score: 133 bits (334), Expect = 6.120e-33 Identity = 63/128 (49.22%), Postives = 84/128 (65.62%), Query Frame = 1
Query: 148 SFWLAANLPLDDDARQELLMLDSVVMRLRLEIKHLEESRRRALCCASCDRGVAWEGDVFTLPGAEGVVGAYVNPTGYVHQTVTVRDARNLVLVGIPEEEHSWFPGYAWTCVYCAFCNEHLGWRFTAIR 531
S+W+A+ LP+D+D R LL + S V RLR E+ LE+ +LCC +CD + G++F L G + AYVNP GYVH+T+TV A +L L+G P E+SWFPGYAWT C C H+GW+FTA R
Sbjct: 1 SYWVASCLPIDNDVRLSLLTVGSAVQRLRCELDILEKCT--SLCCRNCDMEITMRGEIFRL-SQYGPMAAYVNPHGYVHETLTVHKASSLNLIGRPSTEYSWFPGYAWTIAQCRDCGSHMGWKFTATR 125
BLAST of mRNA_Ecto-sp13_S_contig9348.20948.1 vs. uniprot
Match: K1QI70_CRAGI (Protein cereblon n=2 Tax=Crassostrea gigas TaxID=29159 RepID=K1QI70_CRAGI) HSP 1 Score: 140 bits (353), Expect = 6.190e-33 Identity = 67/132 (50.76%), Postives = 88/132 (66.67%), Query Frame = 1
Query: 136 PTLFSFWLAANLPLDDDARQELLMLDSVVMRLRLEIKHLEESRRRALCCASCDRGVAWEGDVFTLPGAEGVVGAYVNPTGYVHQTVTVRDARNLVLVGIPEEEHSWFPGYAWTCVYCAFCNEHLGWRFTAIR 531
P S+W+ NLPLDDD R L+ +DS V RLR + +++ +LCC C+ +A + DVF+L EG +GAYVNP GYVH+T+TV A+NL L+G +EHSWFPGYAWT C C H+GW+FTA R
Sbjct: 297 PVELSYWVIQNLPLDDDLRLNLMGIDSAVQRLRCSLSIVQKCS--SLCCKECNTNIANKNDVFSL-SVEGPLGAYVNPQGYVHETMTVYKAQNLNLIGRATKEHSWFPGYAWTIAQCRRCAFHIGWKFTATR 425 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9348.20948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9348.20948.1 >prot_Ecto-sp13_S_contig9348.20948.1 ID=prot_Ecto-sp13_S_contig9348.20948.1|Name=mRNA_Ecto-sp13_S_contig9348.20948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=238bp MPRWRGKLDPTLFSFWLAANLPLDDDARQELLMLDSVVMRLRLEIKHLEEback to top mRNA from alignment at Ecto-sp13_S_contig9348:319..3815- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9348.20948.1 ID=mRNA_Ecto-sp13_S_contig9348.20948.1|Name=mRNA_Ecto-sp13_S_contig9348.20948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3497bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9348:319..3815- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9348:319..3815- >mRNA_Ecto-sp13_S_contig9348.20948.1 ID=mRNA_Ecto-sp13_S_contig9348.20948.1|Name=mRNA_Ecto-sp13_S_contig9348.20948.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=714bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9348:319..3815- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |