mRNA_Ecto-sp13_S_contig934.20938.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig934.20938.1 vs. uniprot
Match: D8LMJ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMJ5_ECTSI) HSP 1 Score: 762 bits (1968), Expect = 7.500e-270 Identity = 458/621 (73.75%), Postives = 469/621 (75.52%), Query Frame = 1
Query: 367 KWNKPRKTAGNDGTDXXXXXXXXXXXXXXXXXXXXXXXXXXEEEGEXXXXXXXXXXXXXXXXXXSELSGSEDEEGTPKKPKKGLLGLGDRLAARAAAIAKTAGNALQAVTGEGRRRETPPWARAACFRRCNCNHGVPTDSTAFVPLQEGRKLEHEAVGVVTVRTEPLEGAELEFENRPPLARTPPPPYALRLFLEYMDSRTVARCAHTSKEWHCECYRRSEEGVPMHPTYIGMHFMELGSQVDACQDKIDGMFFHQPPTGSFGQLFTAGQRRVTAWRRQETEVDTERDQSTPSAGSGSTKSGKSSETSHSEGDAAPRFEVSWQSAGVCLRDTAPFTMILPVNSSIICCSSNGSIREWSLAHEVKNTRFLAQMWEHNGYITDVAFTAPSVGFCKAHGAPQHSCYMYSVSDDRYLKVWDLATKECLHTVKPKISDCGTLQSVTKSDFHLYVGSSIGRIVVFALGRVCQRPEKHRCHLYEKPQWFCEQETFDLGKDPVQHMVCGGVGGKFKYLFAGARDGTIQVWNVPKESFGHTKVCTFREHKRAITALSLTKAHLFSASDEGHVRIWSLGTLCLQRVVRQERRIKSIWVHHAPPDSPDPGNGSLFLGLATGLVLVYPITDAV 2229
KW KPRKTAGNDGTDXXXXXXXXXXXXXXXXXXXXXXXXXX G XXXXXXXXXXXXXXXXXX E+GTPKKPKKGLLGLGDRLAARAAAIAKTAGNALQAVTGEGRRRETPPWARAACFRRCNCNHGVPTDSTAFVPLQEGRKLEHEAVGVVTVRTEPLEGAELEFENRPPL RTPPPPY LRLFLEYMDSRTVARCAHTSKEWH ECY+R+EEGVPMHP YIGMHFMELGSQVDACQDKIDGMFFHQPPTGS GQLFTAGQRRVTAWRRQETEVDTER+QST S GSGSTKSG+SSETSHSEGDAAPR EVSWQSAGVCLRDTAPFTMILPVNS + ++A NT W+ AFTAPSVGFCKAHGAPQHSCYMYSVSDDRYLKVWDLATK+CLHTVKPKISDCGT VWNVPK SFGHTKVCTFREHKRAITALSLTKAHLFSASDEGHV VRQ+RRIK IWVHHAPPDSPDPGNGSLFLGLATGLVL YPITDAV
Sbjct: 27 KWKKPRKTAGNDGTDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXXXXXXXXXXXXXXXXXXXXXXX----EDGTPKKPKKGLLGLGDRLAARAAAIAKTAGNALQAVTGEGRRRETPPWARAACFRRCNCNHGVPTDSTAFVPLQEGRKLEHEAVGVVTVRTEPLEGAELEFENRPPLERTPPPPYVLRLFLEYMDSRTVARCAHTSKEWHRECYQRNEEGVPMHPAYIGMHFMELGSQVDACQDKIDGMFFHQPPTGSPGQLFTAGQRRVTAWRRQETEVDTEREQSTASEGSGSTKSGESSETSHSEGDAAPRIEVSWQSAGVCLRDTAPFTMILPVNSR--------PRKNPNMAFHSANTSSCFLAWQ--------AFTAPSVGFCKAHGAPQHSCYMYSVSDDRYLKVWDLATKDCLHTVKPKISDCGT------------------------------------------------------------------------------------VWNVPKASFGHTKVCTFREHKRAITALSLTKAHLFSASDEGHV-------------VRQDRRIKCIWVHHAPPDSPDPGNGSLFLGLATGLVLAYPITDAV 530
BLAST of mRNA_Ecto-sp13_S_contig934.20938.1 vs. uniprot
Match: A0A6U4D539_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4D539_9STRA) HSP 1 Score: 204 bits (518), Expect = 1.100e-53 Identity = 141/482 (29.25%), Postives = 216/482 (44.81%), Query Frame = 1
Query: 715 ETPPWARAACFRRCNCNHGVPT-DSTAFVPLQEGRKLEH-EAVGVVTVRTEPLEGAELEFENRPPLARTPPPPYALRLFLEYMDSRTVARCAHTSKEWHCECYRRSEEGVPMHPTYIGMHFMELGSQVDACQDKIDGMFFHQPPTGSFGQLFTAGQRRVTAWRRQETEVDTERDQSTPSAGSGSTKSGKSSETSHSEGDAAPRFEVSWQSAGVCLRDTAPFTMILPVNSSIICCSSNGSIREWSLAHEVKNTRFLAQMWEHNGYITDVAFTAPSVG-----FCKAHGAPQHSCYMYSVSDDRYLKVWDLATKECLHTVKPKISDCGTLQSVTKSDFHLYVGSSIGRIVVFALGRVCQRPEKHRCHLYEKPQW-FCEQETFDLGKDPVQHMVCGGVGGKFKYLFAGARDGTIQVWNVP-KESFGHTKVCTFREHKR--AITALSLTKAHLFSASDEGHVRIWSLGTLCLQRVVRQERRIKSIW 2127
+TP WA +RCNC GV DS + PL R + E + VR E + EF P P L +Y+ ++ +A+ A + W E + M +I M + + +++ G+L+TAG +RV W + +++ +R+TA I VN +++ C+SNGSIR+WSL H KN ++A WEH +I D + P FC+ ++YSVSDDR +KVWD K CL ++ P CGT++SV +S HLYVGSS G I V+ L R C R ++H C + E FC Q GK + + CGG + K+L++ + DGT +VW++P K + H + H A++ T AHLF+A + +R+W+L T+ LQ+V+ E K ++
Sbjct: 96 KTPKWAEKNELKRCNCLDGVDNGDSRVYYPLNLPRFVTSLECPEGIRVRME-----DPEFGWAEPQKVMNPAAEVLDFVFQYVGAKELAKVATVDRLWR--------ERIDMQTHFIDMKQLANDYEHQVHSGRVESCLEFN------GRLYTAGDKRVKVWNLE-----------------------------------------TYECLAEAVRETAVINDIQVVNGALLVCASNGSIRQWSLTHNPKNIAYVAAYWEHRSWINDFIPSEPEPDDDGEMFCR---------FLYSVSDDRTVKVWDANKKVCLFSMDPPNRTCGTMRSVARSARHLYVGSSNGVIYVYPLKRECDREDRHGCSISEHGALPFCLQTELQHGKGIILQLECGGYRRQVKHLYSASTDGTFRVWSLPGKSGYEHECLRVIDAHAPGGALSCFCTTWAHLFTAGQDKVIRVWNLHTMELQKVLHPEELCKCMY 508
BLAST of mRNA_Ecto-sp13_S_contig934.20938.1 vs. uniprot
Match: A0A7S2H458_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H458_9STRA) HSP 1 Score: 99.4 bits (246), Expect = 1.540e-19 Identity = 75/311 (24.12%), Postives = 128/311 (41.16%), Query Frame = 1
Query: 946 LEYMDSRTVARCAHTSKEWHCECYRRSEEGVPMHPTYIGMHFMELGSQVDACQDKIDGMFFHQPPTGSFGQLFTAGQRRVTAWRRQETEVDTERDQSTPSAGSGSTKSGKSSETSHSEGDAAPRFEVSWQSAGVCLRDTAPFTMILPVNSSIICCSSNGSIREWSLAHEVKNTRFLAQMWEHNGYITDVAFTAPSVGFCKAHGAPQHSCYMYSVSDDRYLKVWDLATKECLHTVKPKISDCGTLQSVTKSDFHLYVGSSIGRIVVFALGRV-CQRPEKHRCHLYEKPQWFCEQETF-DLGKDPVQHMVCGG 1872
+ Y++ R++ R + S + E + P Y M + + A + ++ G+ ++ G+ +T G + V W+ Q ++E E D + D P T ++ +++ SSNG++R W++ H +K A MWEHN + D + H +++ SDDR +K WDL C HT++P T++SV SD L+VG S G I V+ C R ++H C++ +P +C Q+T D V +V GG
Sbjct: 1 MPYLNPRSLGRASSVSVVFWSE--------AAVQPHYDDMKRFGVEMKFTAHEKRVKGVVSYR------GRCYTGGDKCVKVWKLQRASAESE------------------------EFDRVELIHT--------VHDLCPVTFCQEIDGNLLVGSSNGAVRMWTMPHSIKKMNQRAVMWEHNALVHDAS-----------HWQRGKFSTLFTASDDRTIKAWDLHQVRCEHTLEPLDRRGATMRSVAVSDSFLFVGHSRGVIYVYLTDTSSCLREDRHECYISPRP--YCLQKTLQDTEGQIVSSIVVGG 252
BLAST of mRNA_Ecto-sp13_S_contig934.20938.1 vs. uniprot
Match: A0A835Z1Z8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Z8_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 5.930e-7 Identity = 41/113 (36.28%), Postives = 56/113 (49.56%), Query Frame = 1
Query: 1912 DGTIQVWNVPKESFGHTKVCT-----FREHKRAITALSLTKAHLFSASDEGHVRIWSLGTLCLQRVVRQERRIKSIWVHHAPPDSP-----------DPGNGSLFLGLATGLV 2202
DG++ VW P+ FGH AIT +++ AH+ SA D G VRI+S GTL LQRV+R R+KS+ + + D G G L+LGL+ G V
Sbjct: 3 DGSLWVWAAPRRRFGHRGRALRSGGXXXXXGAAITHIAVGNAHVLSADDAGEVRIYSAGTLRLQRVLRAGARVKSVCLRQPAAAATAXXXXXXXRGGDDG-GRLYLGLSDGTV 114
BLAST of mRNA_Ecto-sp13_S_contig934.20938.1 vs. uniprot
Match: A0A8J4PZL7_9MYCE (Eukaryotic translation initiation factor 3 subunit I n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PZL7_9MYCE) HSP 1 Score: 56.6 bits (135), Expect = 8.050e-5 Identity = 48/184 (26.09%), Postives = 82/184 (44.57%), Query Frame = 1
Query: 1534 GFCKAHGAPQHSCYMYSVSDDRYLKVWDLATKECLHTVKPKISDCGTLQSVTKSDFHLYVGSSIGRIVVFALGRVCQRPEKHRCHLYEKPQWFCEQETFDLGKDPVQHMVCGGVGGKFKYLFAGARDGTIQVWNVPKESFGHTKVCTFREHKRAITALSLTKAHLF--SASDEGHVRIWSLGTL 2079
G A Q+S Y+ + S D +KVWD+ T CLHTV +++ C +++ + D + V + +G CQ H + TF + H G + KY+F+ DG I++++V K S HT F E+ + +T + TK + + S +G +++ TL
Sbjct: 52 GVVYAMDVSQNSQYLVTASADAKVKVWDVQTGICLHTVNFEVA-CRSIE-FNQGDSQILV------VTDQVMG--CQALV-HVLDFDQATGKLTTNYTFQSPNCKITHATWGPLN---KYIFSSGEDGAIRIYDVEKRSLHHT----FVENTKQVTRIEWTKHRIMFLTCSKDGTAKLYDTKTL 217 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig934.20938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig934.20938.1 >prot_Ecto-sp13_S_contig934.20938.1 ID=prot_Ecto-sp13_S_contig934.20938.1|Name=mRNA_Ecto-sp13_S_contig934.20938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=692bp MVVATQRGWQCKQCKEQNPDEEDFCDKCFAPRRASGAPRETCRTCLHRHSback to top mRNA from alignment at Ecto-sp13_S_contig934:4370..16294- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig934.20938.1 ID=mRNA_Ecto-sp13_S_contig934.20938.1|Name=mRNA_Ecto-sp13_S_contig934.20938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=11925bp|location=Sequence derived from alignment at Ecto-sp13_S_contig934:4370..16294- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig934:4370..16294- >mRNA_Ecto-sp13_S_contig934.20938.1 ID=mRNA_Ecto-sp13_S_contig934.20938.1|Name=mRNA_Ecto-sp13_S_contig934.20938.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2076bp|location=Sequence derived from alignment at Ecto-sp13_S_contig934:4370..16294- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |