mRNA_Ecto-sp13_S_contig9182.20759.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9182.20759.1
Unique NamemRNA_Ecto-sp13_S_contig9182.20759.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9182.20759.1 vs. uniprot
Match: D7G3D0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3D0_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 9.900e-93
Identity = 153/189 (80.95%), Postives = 159/189 (84.13%), Query Frame = 1 
Query:    1 GSSRSSATSCSRKIARTSALVDVVRKSSGVSVGASLSTPATAAPLAT---GRLLRIHAAPDEGSGATTLSTMVAAAAAAVALL-CAQRELQPRWEEDGVCLCKGKASAADSLEDYARRLQRLRSLRDIFEEYATVNADDVGKLMTCGDFLRAMLCYKYVRVDAKELKRRCARYINPLLGDDHGLISFDE 555
            GSSR SA SC+RKI RTSALV+ VR+SSG SVGA LST +TA+         LL I  APDEGSGATTLSTMV           CAQ+ELQPRWEEDGVCLCKGKASAADSLEDYARRLQRLRSLRDIFEEYATVNADDVGKLMTCGDFLRAMLCYKYVRVDAKELKRRCARYINPLLGDDHGLISFDE
Sbjct:    5 GSSRPSAASCNRKIGRTSALVNAVRRSSGFSVGAPLSTRSTASXXXXXXXSSLLGIRTAPDEGSGATTLSTMVXXXXXXXXXXXCAQQELQPRWEEDGVCLCKGKASAADSLEDYARRLQRLRSLRDIFEEYATVNADDVGKLMTCGDFLRAMLCYKYVRVDAKELKRRCARYINPLLGDDHGLISFDE 193
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BLAST of mRNA_Ecto-sp13_S_contig9182.20759.1 vs. uniprot
Match: A0A6H5L3M7_9PHAE (EF-hand domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3M7_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 1.780e-68
Identity = 105/113 (92.92%), Postives = 107/113 (94.69%), Query Frame = 1 
Query:  217 AAAAVALLCAQRELQPRWEEDGVCLCKGKASAADSLEDYARRLQRLRSLRDIFEEYATVNADDVGKLMTCGDFLRAMLCYKYVRVDAKELKRRCARYINPLLGDDHGLISFDE 555
            A AA ALLCAQ+ELQPRWEED VCLCKGK SA DSLEDYARRLQRLRSLRDIFEEYATV+ADDVGKLMTCGDFLRAMLCYKYVRVDAKELKRRCARYINPLLGDDH LISFDE
Sbjct:    3 AVAAAALLCAQQELQPRWEEDCVCLCKGKTSATDSLEDYARRLQRLRSLRDIFEEYATVDADDVGKLMTCGDFLRAMLCYKYVRVDAKELKRRCARYINPLLGDDHSLISFDE 115
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9182.20759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G3D0_ECTSI9.900e-9380.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L3M7_9PHAE1.780e-6892.92EF-hand domain-containing protein (Fragment) n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9182contigEcto-sp13_S_contig9182:4155..5667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size555
Hectar predicted targeting categoryother localisation
Exons3
Cds size555
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464189.9993176-CDS-Ecto-sp13_S_contig9182:4154..44741681464189.9993176-CDS-Ecto-sp13_S_contig9182:4154..4474Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9182 4155..4474 +
1681464190.0109591-CDS-Ecto-sp13_S_contig9182:5223..53501681464190.0109591-CDS-Ecto-sp13_S_contig9182:5223..5350Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9182 5224..5350 +
1681464190.0209057-CDS-Ecto-sp13_S_contig9182:5559..56671681464190.0209057-CDS-Ecto-sp13_S_contig9182:5559..5667Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9182 5560..5667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9182.20759.1prot_Ecto-sp13_S_contig9182.20759.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9182 4155..5667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9182.20759.1

>prot_Ecto-sp13_S_contig9182.20759.1 ID=prot_Ecto-sp13_S_contig9182.20759.1|Name=mRNA_Ecto-sp13_S_contig9182.20759.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=185bp
GSSRSSATSCSRKIARTSALVDVVRKSSGVSVGASLSTPATAAPLATGRL
LRIHAAPDEGSGATTLSTMVAAAAAAVALLCAQRELQPRWEEDGVCLCKG
KASAADSLEDYARRLQRLRSLRDIFEEYATVNADDVGKLMTCGDFLRAML
CYKYVRVDAKELKRRCARYINPLLGDDHGLISFDE
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mRNA from alignment at Ecto-sp13_S_contig9182:4155..5667+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9182.20759.1 ID=mRNA_Ecto-sp13_S_contig9182.20759.1|Name=mRNA_Ecto-sp13_S_contig9182.20759.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1513bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9182:4155..5667+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTTCCAGCAGATCATCCGCCACATCATGTAGCCGGAAGATCGCCAGGAC
CAGTGCGCTAGTCGACGTCGTCAGGAAAAGCAGTGGGGTTAGCGTCGGTG
CGTCGCTGTCCACCCCTGCAACGGCCGCCCCGCTCGCTACTGGCAGGCTG
CTTCGCATACACGCCGCACCGGACGAAGGAAGCGGCGCAACAACGCTGTC
GACAATGGTTGCCGCTGCCGCCGCTGCTGTGGCGTTGCTTTGCGCGCAGC
GGGAGCTGCAGCCGCGGTGGGAAGAGGATGGCGTATGTCTGTGTAAAGGC
AAGGCTAGTGCTGCGGACAGGTGCGCAAGCCGTCTTTTGGCTTTTCTTTG
TGGCATCAGTGACAACAACAACGTTGTATTGGCGCCCCAGCCCCCCGCTC
GGCATGTGTAGAAAAGCCTTCAGGTGTAGGTAGGGTCTGTTGTTGCGGCG
GACTTATCGACTTCGGTCTACTGCTGTAGGTGATTGATAACCGCTCCAGC
CTACACTTACAAAGAACAACAGCAGCAAAACAACGACAGCCGCAGGAACG
GCGTTGCAAGGCGGTTACGTCCTCTCTCCCGGCACACGCCCAGCTCTGCA
GTAGGCAGCGACCGGTATGCGGCACAAGTTTGCAGCAATGGTTGTAGTTG
GCGACGAACATCCGGTGTACTGCTGTAGAGACCCAGGGAGGGCACTGTTA
CGTGCAAAACCACCCCCCCCTCTCTTTCAGTACCACACACCCTAGAGGCT
GCATACATTCCCTTTGGCAGGGAACCCGCCCTGGGTGGTCAGCTTCCCTT
TCCAAGACACTGAAATGTCGTCGTCGTCCCCCGAGAGGTGCTGTTTACGG
GAGCTACTGCACTACGGGCGATTCAACCCCAAACCCCGTGTTTCACGTTG
CGTTGTTGTTGTTGAACCTTGTGCTCTTCTGTTGGTGATGGTTGCCACAT
AACTTTTTTGTATAACGTGTGTGTGTTCCCCCCGCGTTTCTCTTACAACG
CATCGAAAAATATACGGCCGATGAACGGCAACCGACTGGACGAACGCGAA
CGAACGTGGGAAACAACAGCCTCGAGGACTACGCCAGGAGGCTGCAGAGG
CTGCGCTCGCTGCGGGACATCTTCGAAGAGTACGCCACGGTTAACGCGGA
CGACGTGGGGAAGCTCATGACTTGCGGGGACTTTCTCAGGGCGATGGTGA
GATAAAGAGAGGGAAGCCTCGGAGGCATACAGCAGGGAGCAAACTTGCGT
GCCTCGAGTAAGGAGACCCGCCACCACCACCACGACCCCCCTTTGTACGA
GCTATGATGTCGCCGTGTGTTCTGCTCATGTCTCCGTTGTTTCGTTTTCG
CCAAAGTATCGCGTCAACCATCCCCAAACCTTTTTGCCGGTGATGATGAA
CAAAGCTGTGTTACAAGTACGTCCGAGTGGACGCCAAGGAGCTGAAGCGC
CGCTGCGCCCGTTACATCAACCCTCTCCTCGGTGACGACCACGGCCTCAT
CTCCTTCGACGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9182:4155..5667+

>mRNA_Ecto-sp13_S_contig9182.20759.1 ID=mRNA_Ecto-sp13_S_contig9182.20759.1|Name=mRNA_Ecto-sp13_S_contig9182.20759.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9182:4155..5667+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTTCCAGCAGATCATCCGCCACATCATGTAGCCGGAAGATCGCCAGGAC
CAGTGCGCTAGTCGACGTCGTCAGGAAAAGCAGTGGGGTTAGCGTCGGTG
CGTCGCTGTCCACCCCTGCAACGGCCGCCCCGCTCGCTACTGGCAGGCTG
CTTCGCATACACGCCGCACCGGACGAAGGAAGCGGCGCAACAACGCTGTC
GACAATGGTTGCCGCTGCCGCCGCTGCTGTGGCGTTGCTTTGCGCGCAGC
GGGAGCTGCAGCCGCGGTGGGAAGAGGATGGCGTATGTCTGTGTAAAGGC
AAGGCTAGTGCTGCGGACAGCCTCGAGGACTACGCCAGGAGGCTGCAGAG
GCTGCGCTCGCTGCGGGACATCTTCGAAGAGTACGCCACGGTTAACGCGG
ACGACGTGGGGAAGCTCATGACTTGCGGGGACTTTCTCAGGGCGATGCTG
TGTTACAAGTACGTCCGAGTGGACGCCAAGGAGCTGAAGCGCCGCTGCGC
CCGTTACATCAACCCTCTCCTCGGTGACGACCACGGCCTCATCTCCTTCG
ACGAG
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