mRNA_Ecto-sp13_S_contig9180.20753.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9180.20753.1
Unique NamemRNA_Ecto-sp13_S_contig9180.20753.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig9180.20753.1 vs. uniprot
Match: D7G1B9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1B9_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 2.170e-19
Identity = 90/126 (71.43%), Postives = 91/126 (72.22%), Query Frame = 1 
Query:   67 SSVRPRGALSGSGGGSRSGTHAKAGGDXSAQNGENXXXXXXXXXXXXXXXXXXXXXX--SGSVATPATPP-TGKRQXXXXXXXXXXXXXXXXXXXXXXXXKXXXSKKTAKQRGEKASEDNRPSGAK 435
            SSVR RGAL GSGGGSRSGTHAKAGGD SAQNGEN XXXXXXXXXXXXXXXXXXXX   SGSVATPATPP TGKRQ                        K   SKKTAKQRGEKASED+RPSGAK
Sbjct:  186 SSVRLRGALPGSGGGSRSGTHAKAGGDGSAQNGENTXXXXXXXXXXXXXXXXXXXXSTASGSVATPATPPPTGKRQRHGKAKRTGASVEDEDAEEEDPTSKPKKSKKTAKQRGEKASEDHRPSGAK 311
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BLAST of mRNA_Ecto-sp13_S_contig9180.20753.1 vs. uniprot
Match: D7G4P2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P2_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 1.320e-8
Identity = 52/72 (72.22%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:   73 VRPRGALSGSGGGSRSGTHAKAGGDXSAQNGENXXXXXXXXXXXXXXXXXXXXXX-SGSVATPATPPTGKRQ 285
            VRPRGAL GSGG  RSGTHAKAG  X +QNGEN   XXXXXXXXXX          SGSVATPATPPTGKRQ
Sbjct:   46 VRPRGALFGSGGXXRSGTHAKAGXXXXSQNGENTGEXXXXXXXXXXKGKQRGASTASGSVATPATPPTGKRQ 117
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9180.20753.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1B9_ECTSI2.170e-1971.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G4P2_ECTSI1.320e-872.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9180contigEcto-sp13_S_contig9180:793..2600 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size591
Hectar predicted targeting categoryother localisation
Exons4
Cds size588
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464189.6546361-CDS-Ecto-sp13_S_contig9180:793..8771681464189.6546361-CDS-Ecto-sp13_S_contig9180:793..877Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9180 794..877 -
1681464189.665155-CDS-Ecto-sp13_S_contig9180:1262..13431681464189.665155-CDS-Ecto-sp13_S_contig9180:1262..1343Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9180 1263..1343 -
1681464189.6751053-CDS-Ecto-sp13_S_contig9180:1670..17421681464189.6751053-CDS-Ecto-sp13_S_contig9180:1670..1742Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9180 1671..1742 -
1681464189.6914368-CDS-Ecto-sp13_S_contig9180:2249..26001681464189.6914368-CDS-Ecto-sp13_S_contig9180:2249..2600Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9180 2250..2600 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9180.20753.1prot_Ecto-sp13_S_contig9180.20753.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9180 794..2600 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9180.20753.1

>prot_Ecto-sp13_S_contig9180.20753.1 ID=prot_Ecto-sp13_S_contig9180.20753.1|Name=mRNA_Ecto-sp13_S_contig9180.20753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=196bp
KGDEGGGDSQQHDESAAPPGGGSSVRPRGALSGSGGGSRSGTHAKAGGDG
SAQNGENTGEGSGLGKGKGKGKRRGASAASGSVATPATPPTGKRQRQGKA
KGTRVSAEDEDAEEEDPTSKPKKSKKTAKQRGEKASEDNRPSGAKQKGKK
KTKSTKARQQQEKGSADPSKAKAKSKSKGKKKARQQEDEDSDDNDP
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mRNA from alignment at Ecto-sp13_S_contig9180:793..2600-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9180.20753.1 ID=mRNA_Ecto-sp13_S_contig9180.20753.1|Name=mRNA_Ecto-sp13_S_contig9180.20753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1808bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9180:793..2600- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGGGGATGAAGGTGGGGGTGATTCGCAACAGCATGATGAATCCGCCGC
ACCACCAGGCGGCGGATCTTCAGTCAGGCCACGTGGTGCGCTATCTGGGA
GCGGAGGCGGGAGTAGGAGTGGTACGCATGCGAAGGCCGGAGGAGACGGC
TCAGCCCAGAATGGCGAAAACACTGGCGAAGGAAGCGGGTTAGGGAAAGG
GAAAGGGAAAGGGAAGCGACGTGGTGCTTCGGCCGCGTCGGGCTCAGTTG
CCACGCCGGCCACACCTCCGACCGGCAAGCGCCAGCGGCAGGGGAAGGCC
AAGGGGACACGGGTGTCAGCAGAGGATGAGGACGCCGAGGAAGAGGACCC
GGTGCGTCGTGGACTACAGGATGCATGCTGCTGTTGATCTGTATGGTTAG
TGCTTGGTGTAATGCTCTGCTCTCCGTGGCGTAGGTTGGGCACTTTTTTC
CCTTTGTATCGCAGGTGAACCACGGTATAGATGTGATTTGAAAATTAGAG
TTGTTCCCACTCTTGTGTGGTTCCCTACAGCTGTATGCCTCGTCGAGTCA
CTACAGGTGCCTTTGTGCTACTGTACATAGTGTAGAATCCTTTACACTGC
TTGTAAGACCGCTGTGGGATGGCAATTTGTTTGGGACAAGATAGTCCGGC
CTGTAGAAGATGATGAGAGGCAGCCAGCACCCACTACTATACATTAGAAC
GAGGAACAAAAGGTTCGCTTCCACCATGACCGTCGCTTGTCTACCTCACA
CTCGGTGTTTTGGAGCTGATTGCGTTCGGGGTAATGCGCCTGTTACCACC
CTCGTGACATTAATGGCGACACTGCTGTTGTACTCCTTGTGTTGTTGATC
GCCATCAGACGTCAAAACCGAAGAAGTCGAAGAAGACAGCCAAACAGCGG
GGAGAGAAGGCCTCTGAGGATAACCGCCCGGTAGGTTGGACTCTACAAAC
ACCTACGATTGTGCGGCATTTAGTGTACTGTAGGTCAATGGTTGTCTGCA
TTGTTGACAGGCACCATGGCCGGACTGTATTGGTGCAGGCATGGAGTTTT
AATATCAACCTCAGGAATTTCCTGCAATCGCGCAATGTAGACCCAGCATT
GTGTGAGTTGCAGATCAAGGATATCTCTAGAGGCTTATCAATGGTAGTGG
TCCTCTGTGCCGGTAACGCTGAGGTAGTTTCGTCGGTTACGCATCTCACT
TGGTACCAATGGATTCCTTCCATCATATCGCTACTGTCTTGTTTTCCTTT
TCGACAGTCCGGAGCGAAGCAGAAGGGGAAGAAAAAGACGAAGTCCACGA
AAGCCCGACAGCAGCAAGAAAAAGGCTCTGCCGACCCGGTAGGTTGGGGT
TAGGATGATACATTTACTGTTTCAATTTGCATTTTAAGGCGCATATCGTG
TGGAGGGGGAGGAACATCTGCGCGCCTCTCACTTAAATGCGAAAGCCATG
CCAGACAAGTTGAGTGACGAAAGACTGTGCTGCTGCCGCGGTGCATCTTT
TTTGGTTGAACCCTCTAGGTACTCTGAAGACGTTTGCATAAACTGGCGTG
GTACCAAAACCCGTCGAGTTGCCGCAACGTAGCCCTCCAAAACGGGTGCT
GGAAAGTCCATACGTACGTGTACCCGGGCTGCTGGCGCTATGTTGTGATC
GGCGTTAAATTGGAGTCCTCTTGTTGCATCCTGTTGTTATGTCCTATACC
ATGTTACTGGACATGAGCGACAGTCCAAGGCCAAGGCCAAGTCCAAGTCG
AAGGGAAAGAAAAAGGCGCGACAGCAGGAAGATGAGGACTCCGATGACAA
CGACCCGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9180:793..2600-

>mRNA_Ecto-sp13_S_contig9180.20753.1 ID=mRNA_Ecto-sp13_S_contig9180.20753.1|Name=mRNA_Ecto-sp13_S_contig9180.20753.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=588bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9180:793..2600- (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGGGGATGAAGGTGGGGGTGATTCGCAACAGCATGATGAATCCGCCGC
ACCACCAGGCGGCGGATCTTCAGTCAGGCCACGTGGTGCGCTATCTGGGA
GCGGAGGCGGGAGTAGGAGTGGTACGCATGCGAAGGCCGGAGGAGACGGC
TCAGCCCAGAATGGCGAAAACACTGGCGAAGGAAGCGGGTTAGGGAAAGG
GAAAGGGAAAGGGAAGCGACGTGGTGCTTCGGCCGCGTCGGGCTCAGTTG
CCACGCCGGCCACACCTCCGACCGGCAAGCGCCAGCGGCAGGGGAAGGCC
AAGGGGACACGGGTGTCAGCAGAGGATGAGGACGCCGAGGAAGAGGACCC
GACGTCAAAACCGAAGAAGTCGAAGAAGACAGCCAAACAGCGGGGAGAGA
AGGCCTCTGAGGATAACCGCCCGTCCGGAGCGAAGCAGAAGGGGAAGAAA
AAGACGAAGTCCACGAAAGCCCGACAGCAGCAAGAAAAAGGCTCTGCCGA
CCCGTCCAAGGCCAAGGCCAAGTCCAAGTCGAAGGGAAAGAAAAAGGCGC
GACAGCAGGAAGATGAGGACTCCGATGACAACGACCCG
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