mRNA_Ecto-sp13_S_contig9174.20745.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig9174.20745.1 vs. uniprot
Match: D8LHA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA1_ECTSI) HSP 1 Score: 477 bits (1227), Expect = 7.810e-164 Identity = 251/312 (80.45%), Postives = 269/312 (86.22%), Query Frame = 3
Query: 561 MDAQREIAKKKKEDRPIPDTRYLTRNDVIEAARAIKGGKEIDSVIMQKVEKEDPRLYGITTDPVSGTLVNLSGKKGRVVAARRDVDGYLQYRVELESKHRKTKGTNKKLNTRQLLEAAVGKEVVRWEEEVKRVRKVFCAILSFVYCPLYKFVTNDPKVKRKAKPVDLKGEEGTEAVELRKFAWNEIKDAPATHVVNDDEIKLLASDEGLEQELGENGTLARVLGTNLDAYSGLMRERKDYAKQHYSTVDHHVKGAQAAYKLGRVMSFESCMAPLSVGGVHDELPPGVRLA----QSLTLPTVLSSAPWAPHG 1484
MDAQREIAKKKK+DRPIPDTRYLTRNDVIEA RAIK KEIDSVIMQK+EKEDPRLYGIT DPVSGTLVNL GKKGRVVAARRDVDGYL+Y VELE KHRKTKG K +NTRQLLEAA G+ VVRWE+EV RV VFCAILS VY P+YKFVT P+VKRK KPVDLKGE+G EAVELR+FAW +IK APATHVVND E KLLASDEGLEQEL E GTLARVLG NLDAYSGL+ E +DYAKQHYSTVDH+VKGAQAAYKLGRVMSF+SCMAPLSVGGVHDELPPGVRLA + +TLP A A +G
Sbjct: 1 MDAQREIAKKKKKDRPIPDTRYLTRNDVIEAVRAIKAEKEIDSVIMQKMEKEDPRLYGITADPVSGTLVNLDGKKGRVVAARRDVDGYLKYCVELEGKHRKTKGIAKNVNTRQLLEAAGGEGVVRWEKEVDRVTTVFCAILSLVYVPVYKFVTIVPRVKRKVKPVDLKGEDGKEAVELREFAWEKIKGAPATHVVNDHEKKLLASDEGLEQELCEKGTLARVLGINLDAYSGLVHEPRDYAKQHYSTVDHYVKGAQAAYKLGRVMSFQSCMAPLSVGGVHDELPPGVRLAHEEQRKITLPITKKEASEAGYG 312
BLAST of mRNA_Ecto-sp13_S_contig9174.20745.1 vs. uniprot
Match: A0A6H5K3D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D8_9PHAE) HSP 1 Score: 460 bits (1184), Expect = 4.880e-149 Identity = 250/314 (79.62%), Postives = 266/314 (84.71%), Query Frame = 3
Query: 555 ANMDAQREIAKKKKEDRPIPDTRYLTRNDVIEAARAIKGGKEIDSVIMQKVEKEDPRLYGITTDPVSGTLVNLSGKKGRVVAARRDVDGYLQYRVELESKHRKTKGTNKKLNTRQLLEAAVGKEVVRWEEEVKRVRKVFCAILSFVYCPLYKFVTNDPKVKRKAKPVDLKGEEGTEAVELRKFAWNEIKDAPATHVVNDDEIKLLASDEGLEQELGENGTLARVLGTNLDAYSGLMRERKDYAKQHYSTVDHHVKGAQAAYKLGRVMSFESCMAPLSVGGVHDELPPGVRLA----QSLTLPTVLSSAPWAPHG 1484
ANMDAQR IAKKKKEDRPIPDTRYLTRNDVIEAARAI+ +EIDSVIM K+EK R++G RVVAARRDVDG LQYRV+LESKHRKTKGTNKKLNTRQLLEAAVGK VVRWEEEVKRVRKVFCAILSFV CPLYKFVTNDPKVKRK KPV+LKGEEGT+AVE+RKFAWNEI+DAPATHVVND E KLLASDE LEQELGENGTLARVLGTNLDAYS LMRERKDYAKQHYST DH+VK AQAAYKLGR+MSFESCMAPLSVGGVHDELPPGVRLA + +TL + A A +G
Sbjct: 548 ANMDAQRAIAKKKKEDRPIPDTRYLTRNDVIEAARAIRAKEEIDSVIMPKLEK---RIHG------------------RVVAARRDVDGSLQYRVKLESKHRKTKGTNKKLNTRQLLEAAVGKGVVRWEEEVKRVRKVFCAILSFVCCPLYKFVTNDPKVKRKVKPVNLKGEEGTKAVEIRKFAWNEIQDAPATHVVNDHEKKLLASDERLEQELGENGTLARVLGTNLDAYSRLMRERKDYAKQHYSTADHYVKVAQAAYKLGRLMSFESCMAPLSVGGVHDELPPGVRLAHEEQRKITLTILKKEASEAGYG 840
BLAST of mRNA_Ecto-sp13_S_contig9174.20745.1 vs. uniprot
Match: D8LMU9_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU9_ECTSI) HSP 1 Score: 382 bits (980), Expect = 3.690e-122 Identity = 195/299 (65.22%), Postives = 238/299 (79.60%), Query Frame = 3
Query: 552 RANMDAQREIAKKKKEDRPIPDTRYLTRNDVIEAARAIKGGKEIDSVIMQKVEKEDPRLYGITTDPVSGTLVNLSGKKGRVVAARRDVDGYLQYRVELESKHRKTKGTNKKLNTRQLLEAAVGKEVVRWEEEVKRVRKVFCAILSFVYCPLYKFVTNDPKVKRKAKPVDLKGEEGTEAVELRKFAWNEIKDAPATHVVNDDEIKLLASDEGLEQELGENGTLARVLGTNLDAYSGLM------RERKDYAKQHYSTVDHHVKGAQAAYKLGRVMSFESCMAPLSVGGVHDELPPGVRLA 1430
+AN+DAQRE+AKKKKED+PI DTRYLTRNDV EA R +K EID I++K+EKEDPRLYGIT DPVSGT V L +KGRVVAA+RD DGYL++RVEL+ K RK KGTNK LN+RQLLE+AV + +VRWE+EVKR+ K FC+I + VY +YKFV +D KVKRK PV L+G+E TEA++LR+FAW++IK A A+ V+N E+ LLASDE L++EL ++ +L +VL NLD Y GLM + DYA QHYSTVDH++KGAQAAYKLGRVMS ESCMAPLS+GG DELPPGV LA
Sbjct: 191 KANIDAQRELAKKKKEDQPISDTRYLTRNDVTEAVRQMKAEIEIDGAIIRKMEKEDPRLYGITVDPVSGTQVELDSRKGRVVAAKRDADGYLEFRVELDGKQRKGKGTNKTLNSRQLLESAVSEGIVRWEDEVKRMGKAFCSIFALVYVLVYKFVISDDKVKRKVNPVKLEGKERTEALKLRRFAWDQIKSARASEVINAHELGLLASDEELQRELQQDNSLVKVLNINLDTYPGLMLLEDEHEQHMDYAPQHYSTVDHYIKGAQAAYKLGRVMSLESCMAPLSMGGDRDELPPGVNLA 489
BLAST of mRNA_Ecto-sp13_S_contig9174.20745.1 vs. uniprot
Match: A0A6H5JX39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX39_9PHAE) HSP 1 Score: 339 bits (870), Expect = 5.340e-102 Identity = 178/299 (59.53%), Postives = 218/299 (72.91%), Query Frame = 3
Query: 552 RANMDAQREIAKKKKEDRPIPDTRYLTRNDVIEAARAIKGGKEIDSVIMQKVEKEDPRLYGITTDPVSGTLVNLSGKKGRVVAARRDVDGYLQYRVELESKHRKTKGTNKKLNTRQLLEAAVGKEVVRWEEEVKRVRKVFCAILSFVYCPLYKFVTNDPKVKRKAKPVDLKGEEGTEAVELRKFAWNEIKDAPATHVVNDDEIKLLASDEGLEQELGENGTLARVLGTNLDAYSGLM------RERKDYAKQHYSTVDHHVKGAQAAYKLGRVMSFESCMAPLSVGGVHDELPPGVRLA 1430
+AN+DAQRE+AKKKKED+PI DTRYLTRNDV EA R +K EID I++K+EKEDPRLYGIT DPVSGT V L +KGRVVA KGTNK LNTRQLLE+AVG+ + RWE+EVKR+ K FC+I + V+ P+YKF ND +VKRK PV L+G+E TEA +LR+FAW++IK A A+ V+N E+ LLASDE L++EL ++ +L +VL NLD Y GLM + DYA QHYST+DH++KGAQAAYKLGRVMS ESCMAPL +GG +ELPPGV LA
Sbjct: 648 KANIDAQRELAKKKKEDQPISDTRYLTRNDVTEAVRQMKAAIEIDGAILRKMEKEDPRLYGITVDPVSGTQVELDSRKGRVVAG---------------------KGTNKTLNTRQLLESAVGEGIGRWEDEVKRMEKAFCSIFALVHVPVYKFAINDDEVKRKVNPVKLEGKEKTEAFKLRRFAWDQIKSARASEVINAHELCLLASDEELQRELRQDNSLVQVLNINLDTYPGLMLLKDEHEHQMDYAPQHYSTIDHYIKGAQAAYKLGRVMSLESCMAPLFIGGDREELPPGVNLA 925
BLAST of mRNA_Ecto-sp13_S_contig9174.20745.1 vs. uniprot
Match: D7FKZ5_ECTSI (PHD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ5_ECTSI) HSP 1 Score: 97.8 bits (242), Expect = 1.150e-17 Identity = 92/313 (29.39%), Postives = 149/313 (47.60%), Query Frame = 3
Query: 558 NMDAQREIAKKKKEDRPIPDTRYLTRNDVIEAARAIKG--GKEIDSVIMQKVEKEDPRLYGITTDPVSGTLVNLSGKKGRVVAARRDVDG----YLQYRVELESKH--------RKTKGTNKKLNTRQLLEAAVGKEVVRWEEEVKRVRKVFCAILSFVYCPLYKFVTN-DPKVKRKAKPVDLKGEEGTEAVELRKFAWNEIKDAPATHVVNDDEIKLLAS--DEGLEQELGENGTLARVLGTNLDAYS-----GLMRERKDYAKQHYSTVDHHVKGAQAAYKLGRVMSFESCMAPLSVGGVHDELPPGVRLA 1430
N R++ ++ + DR D RYLT ++ A + G G + D+ +K+ K D RLYGIT V G + G + RD DG Y ++ E+ K + + +L E +VV ++ RVR +L V + ++ T+ + +V R+ L E + +RK A+ EI+D + + EIK+L S D L ++L + G+ +LG LD + GL+ R+++ K+ +H ++GAQ A+KLGR SFESC+ P+S GGV+ ELP + A
Sbjct: 822 NRKRARDLREEIRGDRAKADHRYLTLCEIKAALMDVDGDTGGDFDTA-WKKLGKIDYRLYGIT---VMGRRLRGKGVQYEKGTKVRDSDGREGVVAGYSLDKETCSGLFTVQWGEKETTEHGLYDVLELAENFGDPDVVTIGDDKWRVRMFLRGVLCMVNVQVRRYTTSSENRVTRRRNLYTLPSESADRTMAMRKTAYEEIQDVSSASTMTPYEIKILESPSDPELVRDLEKAGSFFTMLG--LDGFKDTQELGLVYVREEFHKRQVEFANHFIRGAQVAWKLGRPTSFESCLVPVSAGGVYTELPSEINCA 1128 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9174.20745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig9174.20745.1 >prot_Ecto-sp13_S_contig9174.20745.1 ID=prot_Ecto-sp13_S_contig9174.20745.1|Name=mRNA_Ecto-sp13_S_contig9174.20745.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=185bp MSGSTDEDIEVQLQRQDEIAKRIREREARLSVEARAATTRDLLLSVNDGDback to top mRNA from alignment at Ecto-sp13_S_contig9174:62..1724- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig9174.20745.1 ID=mRNA_Ecto-sp13_S_contig9174.20745.1|Name=mRNA_Ecto-sp13_S_contig9174.20745.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9174:62..1724- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9174:62..1724- >mRNA_Ecto-sp13_S_contig9174.20745.1 ID=mRNA_Ecto-sp13_S_contig9174.20745.1|Name=mRNA_Ecto-sp13_S_contig9174.20745.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9174:62..1724- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |