mRNA_Ecto-sp13_S_contig9174.20745.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig9174.20745.1
Unique NamemRNA_Ecto-sp13_S_contig9174.20745.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig9174.20745.1 vs. uniprot
Match: D8LHA1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA1_ECTSI)

HSP 1 Score: 477 bits (1227), Expect = 7.810e-164
Identity = 251/312 (80.45%), Postives = 269/312 (86.22%), Query Frame = 3
Query:  561 MDAQREIAKKKKEDRPIPDTRYLTRNDVIEAARAIKGGKEIDSVIMQKVEKEDPRLYGITTDPVSGTLVNLSGKKGRVVAARRDVDGYLQYRVELESKHRKTKGTNKKLNTRQLLEAAVGKEVVRWEEEVKRVRKVFCAILSFVYCPLYKFVTNDPKVKRKAKPVDLKGEEGTEAVELRKFAWNEIKDAPATHVVNDDEIKLLASDEGLEQELGENGTLARVLGTNLDAYSGLMRERKDYAKQHYSTVDHHVKGAQAAYKLGRVMSFESCMAPLSVGGVHDELPPGVRLA----QSLTLPTVLSSAPWAPHG 1484
            MDAQREIAKKKK+DRPIPDTRYLTRNDVIEA RAIK  KEIDSVIMQK+EKEDPRLYGIT DPVSGTLVNL GKKGRVVAARRDVDGYL+Y VELE KHRKTKG  K +NTRQLLEAA G+ VVRWE+EV RV  VFCAILS VY P+YKFVT  P+VKRK KPVDLKGE+G EAVELR+FAW +IK APATHVVND E KLLASDEGLEQEL E GTLARVLG NLDAYSGL+ E +DYAKQHYSTVDH+VKGAQAAYKLGRVMSF+SCMAPLSVGGVHDELPPGVRLA    + +TLP     A  A +G
Sbjct:    1 MDAQREIAKKKKKDRPIPDTRYLTRNDVIEAVRAIKAEKEIDSVIMQKMEKEDPRLYGITADPVSGTLVNLDGKKGRVVAARRDVDGYLKYCVELEGKHRKTKGIAKNVNTRQLLEAAGGEGVVRWEKEVDRVTTVFCAILSLVYVPVYKFVTIVPRVKRKVKPVDLKGEDGKEAVELREFAWEKIKGAPATHVVNDHEKKLLASDEGLEQELCEKGTLARVLGINLDAYSGLVHEPRDYAKQHYSTVDHYVKGAQAAYKLGRVMSFQSCMAPLSVGGVHDELPPGVRLAHEEQRKITLPITKKEASEAGYG 312          
BLAST of mRNA_Ecto-sp13_S_contig9174.20745.1 vs. uniprot
Match: A0A6H5K3D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3D8_9PHAE)

HSP 1 Score: 460 bits (1184), Expect = 4.880e-149
Identity = 250/314 (79.62%), Postives = 266/314 (84.71%), Query Frame = 3
Query:  555 ANMDAQREIAKKKKEDRPIPDTRYLTRNDVIEAARAIKGGKEIDSVIMQKVEKEDPRLYGITTDPVSGTLVNLSGKKGRVVAARRDVDGYLQYRVELESKHRKTKGTNKKLNTRQLLEAAVGKEVVRWEEEVKRVRKVFCAILSFVYCPLYKFVTNDPKVKRKAKPVDLKGEEGTEAVELRKFAWNEIKDAPATHVVNDDEIKLLASDEGLEQELGENGTLARVLGTNLDAYSGLMRERKDYAKQHYSTVDHHVKGAQAAYKLGRVMSFESCMAPLSVGGVHDELPPGVRLA----QSLTLPTVLSSAPWAPHG 1484
            ANMDAQR IAKKKKEDRPIPDTRYLTRNDVIEAARAI+  +EIDSVIM K+EK   R++G                  RVVAARRDVDG LQYRV+LESKHRKTKGTNKKLNTRQLLEAAVGK VVRWEEEVKRVRKVFCAILSFV CPLYKFVTNDPKVKRK KPV+LKGEEGT+AVE+RKFAWNEI+DAPATHVVND E KLLASDE LEQELGENGTLARVLGTNLDAYS LMRERKDYAKQHYST DH+VK AQAAYKLGR+MSFESCMAPLSVGGVHDELPPGVRLA    + +TL  +   A  A +G
Sbjct:  548 ANMDAQRAIAKKKKEDRPIPDTRYLTRNDVIEAARAIRAKEEIDSVIMPKLEK---RIHG------------------RVVAARRDVDGSLQYRVKLESKHRKTKGTNKKLNTRQLLEAAVGKGVVRWEEEVKRVRKVFCAILSFVCCPLYKFVTNDPKVKRKVKPVNLKGEEGTKAVEIRKFAWNEIQDAPATHVVNDHEKKLLASDERLEQELGENGTLARVLGTNLDAYSRLMRERKDYAKQHYSTADHYVKVAQAAYKLGRLMSFESCMAPLSVGGVHDELPPGVRLAHEEQRKITLTILKKEASEAGYG 840          
BLAST of mRNA_Ecto-sp13_S_contig9174.20745.1 vs. uniprot
Match: D8LMU9_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU9_ECTSI)

HSP 1 Score: 382 bits (980), Expect = 3.690e-122
Identity = 195/299 (65.22%), Postives = 238/299 (79.60%), Query Frame = 3
Query:  552 RANMDAQREIAKKKKEDRPIPDTRYLTRNDVIEAARAIKGGKEIDSVIMQKVEKEDPRLYGITTDPVSGTLVNLSGKKGRVVAARRDVDGYLQYRVELESKHRKTKGTNKKLNTRQLLEAAVGKEVVRWEEEVKRVRKVFCAILSFVYCPLYKFVTNDPKVKRKAKPVDLKGEEGTEAVELRKFAWNEIKDAPATHVVNDDEIKLLASDEGLEQELGENGTLARVLGTNLDAYSGLM------RERKDYAKQHYSTVDHHVKGAQAAYKLGRVMSFESCMAPLSVGGVHDELPPGVRLA 1430
            +AN+DAQRE+AKKKKED+PI DTRYLTRNDV EA R +K   EID  I++K+EKEDPRLYGIT DPVSGT V L  +KGRVVAA+RD DGYL++RVEL+ K RK KGTNK LN+RQLLE+AV + +VRWE+EVKR+ K FC+I + VY  +YKFV +D KVKRK  PV L+G+E TEA++LR+FAW++IK A A+ V+N  E+ LLASDE L++EL ++ +L +VL  NLD Y GLM       +  DYA QHYSTVDH++KGAQAAYKLGRVMS ESCMAPLS+GG  DELPPGV LA
Sbjct:  191 KANIDAQRELAKKKKEDQPISDTRYLTRNDVTEAVRQMKAEIEIDGAIIRKMEKEDPRLYGITVDPVSGTQVELDSRKGRVVAAKRDADGYLEFRVELDGKQRKGKGTNKTLNSRQLLESAVSEGIVRWEDEVKRMGKAFCSIFALVYVLVYKFVISDDKVKRKVNPVKLEGKERTEALKLRRFAWDQIKSARASEVINAHELGLLASDEELQRELQQDNSLVKVLNINLDTYPGLMLLEDEHEQHMDYAPQHYSTVDHYIKGAQAAYKLGRVMSLESCMAPLSMGGDRDELPPGVNLA 489          
BLAST of mRNA_Ecto-sp13_S_contig9174.20745.1 vs. uniprot
Match: A0A6H5JX39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX39_9PHAE)

HSP 1 Score: 339 bits (870), Expect = 5.340e-102
Identity = 178/299 (59.53%), Postives = 218/299 (72.91%), Query Frame = 3
Query:  552 RANMDAQREIAKKKKEDRPIPDTRYLTRNDVIEAARAIKGGKEIDSVIMQKVEKEDPRLYGITTDPVSGTLVNLSGKKGRVVAARRDVDGYLQYRVELESKHRKTKGTNKKLNTRQLLEAAVGKEVVRWEEEVKRVRKVFCAILSFVYCPLYKFVTNDPKVKRKAKPVDLKGEEGTEAVELRKFAWNEIKDAPATHVVNDDEIKLLASDEGLEQELGENGTLARVLGTNLDAYSGLM------RERKDYAKQHYSTVDHHVKGAQAAYKLGRVMSFESCMAPLSVGGVHDELPPGVRLA 1430
            +AN+DAQRE+AKKKKED+PI DTRYLTRNDV EA R +K   EID  I++K+EKEDPRLYGIT DPVSGT V L  +KGRVVA                      KGTNK LNTRQLLE+AVG+ + RWE+EVKR+ K FC+I + V+ P+YKF  ND +VKRK  PV L+G+E TEA +LR+FAW++IK A A+ V+N  E+ LLASDE L++EL ++ +L +VL  NLD Y GLM        + DYA QHYST+DH++KGAQAAYKLGRVMS ESCMAPL +GG  +ELPPGV LA
Sbjct:  648 KANIDAQRELAKKKKEDQPISDTRYLTRNDVTEAVRQMKAAIEIDGAILRKMEKEDPRLYGITVDPVSGTQVELDSRKGRVVAG---------------------KGTNKTLNTRQLLESAVGEGIGRWEDEVKRMEKAFCSIFALVHVPVYKFAINDDEVKRKVNPVKLEGKEKTEAFKLRRFAWDQIKSARASEVINAHELCLLASDEELQRELRQDNSLVQVLNINLDTYPGLMLLKDEHEHQMDYAPQHYSTIDHYIKGAQAAYKLGRVMSLESCMAPLFIGGDREELPPGVNLA 925          
BLAST of mRNA_Ecto-sp13_S_contig9174.20745.1 vs. uniprot
Match: D7FKZ5_ECTSI (PHD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKZ5_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.150e-17
Identity = 92/313 (29.39%), Postives = 149/313 (47.60%), Query Frame = 3
Query:  558 NMDAQREIAKKKKEDRPIPDTRYLTRNDVIEAARAIKG--GKEIDSVIMQKVEKEDPRLYGITTDPVSGTLVNLSGKKGRVVAARRDVDG----YLQYRVELESKH--------RKTKGTNKKLNTRQLLEAAVGKEVVRWEEEVKRVRKVFCAILSFVYCPLYKFVTN-DPKVKRKAKPVDLKGEEGTEAVELRKFAWNEIKDAPATHVVNDDEIKLLAS--DEGLEQELGENGTLARVLGTNLDAYS-----GLMRERKDYAKQHYSTVDHHVKGAQAAYKLGRVMSFESCMAPLSVGGVHDELPPGVRLA 1430
            N    R++ ++ + DR   D RYLT  ++  A   + G  G + D+   +K+ K D RLYGIT   V G  +   G +       RD DG       Y ++ E+           K    +   +  +L E     +VV   ++  RVR     +L  V   + ++ T+ + +V R+     L  E     + +RK A+ EI+D  +   +   EIK+L S  D  L ++L + G+   +LG  LD +      GL+  R+++ K+     +H ++GAQ A+KLGR  SFESC+ P+S GGV+ ELP  +  A
Sbjct:  822 NRKRARDLREEIRGDRAKADHRYLTLCEIKAALMDVDGDTGGDFDTA-WKKLGKIDYRLYGIT---VMGRRLRGKGVQYEKGTKVRDSDGREGVVAGYSLDKETCSGLFTVQWGEKETTEHGLYDVLELAENFGDPDVVTIGDDKWRVRMFLRGVLCMVNVQVRRYTTSSENRVTRRRNLYTLPSESADRTMAMRKTAYEEIQDVSSASTMTPYEIKILESPSDPELVRDLEKAGSFFTMLG--LDGFKDTQELGLVYVREEFHKRQVEFANHFIRGAQVAWKLGRPTSFESCLVPVSAGGVYTELPSEINCA 1128          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig9174.20745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LHA1_ECTSI7.810e-16480.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3D8_9PHAE4.880e-14979.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMU9_ECTSI3.690e-12265.22PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JX39_9PHAE5.340e-10259.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKZ5_ECTSI1.150e-1729.39PHD domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig9174contigEcto-sp13_S_contig9174:62..1724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1484
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionMembrane-localised PHD-type zinc finger protein
Ec32 orthologEc-02_003710.1
Cds size555
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464188.947019-UTR-Ecto-sp13_S_contig9174:61..9151681464188.947019-UTR-Ecto-sp13_S_contig9174:61..915Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9174 62..915 -
1681464188.979864-UTR-Ecto-sp13_S_contig9174:1649..17241681464188.979864-UTR-Ecto-sp13_S_contig9174:1649..1724Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig9174 1650..1724 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464188.9589245-CDS-Ecto-sp13_S_contig9174:915..11591681464188.9589245-CDS-Ecto-sp13_S_contig9174:915..1159Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9174 916..1159 -
1681464188.9695265-CDS-Ecto-sp13_S_contig9174:1338..16491681464188.9695265-CDS-Ecto-sp13_S_contig9174:1338..1649Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig9174 1339..1649 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig9174.20745.1prot_Ecto-sp13_S_contig9174.20745.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig9174 916..1649 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig9174.20745.1

>prot_Ecto-sp13_S_contig9174.20745.1 ID=prot_Ecto-sp13_S_contig9174.20745.1|Name=mRNA_Ecto-sp13_S_contig9174.20745.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=185bp
MSGSTDEDIEVQLQRQDEIAKRIREREARLSVEARAATTRDLLLSVNDGD
DDREETCKECKQHFDDDTDMMTCSSCEESWHRECTNDPECNNIDTMTAKK
ARARDGDISGDDDSGGREGDASGDEGSDSDSTKSAKTRASRSPHIDLVEA
KREEDRDIIERTWTPNVRSPKRKKRTGRSRILAI*
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mRNA from alignment at Ecto-sp13_S_contig9174:62..1724-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig9174.20745.1 ID=mRNA_Ecto-sp13_S_contig9174.20745.1|Name=mRNA_Ecto-sp13_S_contig9174.20745.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9174:62..1724- (Ectocarpus species13 EcNAP12_S_4_19m)
TTGGAGCTGGTGGCGATCAAAGATGGCGCTTCCTCTCAGATCAACAATGC CGGAAACGCTGCTGCTATCCATAAAATGTCAGGAAGCACAGATGAAGACA TCGAGGTGCAACTCCAACGGCAGGACGAAATCGCAAAGCGGATACGGGAA CGTGAAGCACGACTTTCGGTGGAGGCTCGAGCTGCGACAACTCGGGATCT ACTGCTGTCGGTCAACGACGGTGACGACGACAGGGAGGAAACGTGCAAGG AGTGCAAGCAACATTTCGATGATGACACCGATATGATGACTTGTTCTTCC TGTGAGGAGAGCTGGCACCGGGAGTGTACGAATGACCCGGAATGCAACAA CATTGACACTATGACGGCAAAGAAAGCTCGAGCGCGGTAGGGTATGGAAG CGTAATTGTTTATCCCTTATTTAATCTGGCCAAAACGTTGATATCCTTTA CCCTTTTCCGTTAAACACCACAAACCCACTATTTTTTTTATTTGTCTTTC CTTGTTGCGCAGTGGTTGTGCGCGCGCTGCTCTGGCCCCGGGGCGGGCTC TACGGGCGGCGACAGCGATGGGGATATCAGCGGAGACGATGACAGCGGTG GCAGAGAAGGAGATGCGAGCGGAGACGAGGGCAGTGATAGTGACAGTACA AAATCAGCAAAAACGCGGGCAAGTAGGTCCCCGCACATCGACCTCGTTGA AGCCAAAAGGGAAGAGGACCGTGATATCATCGAGCGAACATGGACGCCCA ACGTGAGATCGCCAAAAAGAAAAAAGAGGACCGGCCGATCCCGGATACTC GCTATCTGACAAGGAACGATGTCATCGAAGCTGCTCGAGCCATCAAAGGG GGGAAGGAAATCGATAGCGTCATCATGCAGAAGGTGGAGAAAGAGGATCC ACGTCTCTACGGAATCACGACAGACCCGGTGAGCGGCACACTGGTCAACC TCAGCGGCAAAAAGGGGAGGGTCGTGGCAGCAAGGAGGGATGTAGACGGG TACTTGCAATACCGTGTCGAGTTGGAAAGCAAACACCGTAAGACCAAGGG GACCAACAAAAAGCTCAACACCCGTCAACTTCTCGAGGCTGCCGTGGGCA AGGAGGTCGTCCGGTGGGAAGAGGAGGTGAAGCGGGTGAGAAAGGTTTTC TGCGCTATTCTCTCCTTCGTGTACTGTCCTCTCTACAAGTTCGTCACCAA CGACCCAAAAGTGAAGCGAAAAGCGAAGCCGGTCGATTTGAAAGGGGAAG AGGGAACGGAAGCTGTCGAGCTTCGCAAATTTGCGTGGAACGAGATTAAG GATGCGCCTGCTACGCATGTGGTCAATGACGACGAAATAAAACTTCTCGC CTCGGACGAAGGATTAGAGCAGGAGCTTGGTGAAAACGGCACTCTTGCAA GAGTTCTGGGCACCAACCTCGATGCGTACTCCGGATTAATGCGTGAGCGA AAGGACTACGCGAAACAGCACTACAGCACCGTGGACCACCACGTCAAAGG AGCTCAGGCTGCGTACAAGCTGGGTCGAGTGATGAGCTTTGAGTCCTGCA TGGCTCCGTTGTCCGTGGGTGGCGTCCACGACGAGCTTCCACCGGGAGTC AGGCTTGCACAATCTCTCACACTACCGACAGTTTTGTCAAGTGCCCCATG GGCGCCCCATGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig9174:62..1724-

>mRNA_Ecto-sp13_S_contig9174.20745.1 ID=mRNA_Ecto-sp13_S_contig9174.20745.1|Name=mRNA_Ecto-sp13_S_contig9174.20745.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=555bp|location=Sequence derived from alignment at Ecto-sp13_S_contig9174:62..1724- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCAGGAAGCACAGATGAAGACATCGAGGTGCAACTCCAACGGCAGGA
CGAAATCGCAAAGCGGATACGGGAACGTGAAGCACGACTTTCGGTGGAGG
CTCGAGCTGCGACAACTCGGGATCTACTGCTGTCGGTCAACGACGGTGAC
GACGACAGGGAGGAAACGTGCAAGGAGTGCAAGCAACATTTCGATGATGA
CACCGATATGATGACTTGTTCTTCCTGTGAGGAGAGCTGGCACCGGGAGT
GTACGAATGACCCGGAATGCAACAACATTGACACTATGACGGCAAAGAAA
GCTCGAGCGCGCGATGGGGATATCAGCGGAGACGATGACAGCGGTGGCAG
AGAAGGAGATGCGAGCGGAGACGAGGGCAGTGATAGTGACAGTACAAAAT
CAGCAAAAACGCGGGCAAGTAGGTCCCCGCACATCGACCTCGTTGAAGCC
AAAAGGGAAGAGGACCGTGATATCATCGAGCGAACATGGACGCCCAACGT
GAGATCGCCAAAAAGAAAAAAGAGGACCGGCCGATCCCGGATACTCGCTA
TCTGA
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